Member of Scientific Advisory Boards

Steering Committee member of the International Conference Series "Computability in Europe, 2014-2018 and 2019-2022, EU.

Scientific Advisory Board member of the Institut des Hautes Etudes pour la Science et la Technologie, Ministère de l’Enseignement Supérieur et de la Recherche, 2017-now, France.

President of the Scientific Advisory Board, Department of Biology and Modeling of the Cell, Ecole Normale Supérieure de Lyon, 2017-2021, France.

Scientific Advisory Board member of the Institut Nationale des Sciences Biologiques, CNRS, 2011-2014 and 2015-2016, France.

Scientific Committee member of the Région Ile-de-France, 2013-2015, France.

Scientific Advisory Board member of the Departments of Applied Mathematics and Computer Science (MIA) of the National Institute for Agricultural Research (INRA), 2011-2014, France.

Scientific Committee member for the Plan National de Biologie Synthétique et Systémique, Ministère de l'Enseignement Supérieur et de la Recherche, 2014, France.

Board of Trustees member of the Station Biologique de Roscoff, 2008-2013, France.

Steering Committee member of the International Society for Nanoscale Science, Computation and Engineering, 2004-2009, global.

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Editorial Board

Series editor "Computer Science and Information Technology", Hermes-Wiley, 2012-now. If you have a book project (in english) or if you wish to publish a thematic issue in the collection, please write to me.

Director of the collection in "Bioinformatics", Hermes-Lavoisier Sciences, 2004-now. If you have a book project (either in english or in french) or if you wish to publish a thematic issue in the collection, please write to me.

Member of the Advisory Board for Springer Natural Computing Book Series, 2018-now.

Associate Editor of Computability, the journal of the Association CiE, 2011-now.

Associate Editor of Frontiers in Bioinformatics and Computational Biology, 2011-20.

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Co-chair and Programme Committee member

ISMB/ECCB2023 - The International Society of Molecular Biology/The European Conference of Computational Biology, Lyon, France, 2023. Co-chair: L. Wong (University of Singapore).

WABI 2021 - The 21st Workshop on Algorithms in BioInformatics, University of Chicago, USA - organized together with the 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM BCB), 2021. Co-chair: Mohammed El-Kebir (University of Illinois at Urbana-Champaign, USA).

DNA 11, the 11th International Meeting on DNA Computing, University of Western Ontario, London, Ontario, Canada, June 2005. Co-chair: Niles Pierce (Caltech, USA).

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Organiser and Programme Committee member

6th Cross Disciplinary Genomics Symposium - Single Cell and Omics, international meeting, Sorbonne Université, Paris, November 2019.

Computational biology talks to experimental biology, organised on behalf of the Société de Biologie, Institut Curie, Paris, France, October 18, 2017.

Scientific Trends at the Interfaces: Bioinformatics - Scientific Visualisation, Summer School organised by the Institut de la Simulation, du Calcul et des Données (ISCD), Université Pierre et Marie Curie, Roscoff, France, July-August 2017.

Formal methods in the eyes of biological data, mini-workshop at the Annual Congress of the Société des Mathématiques Appliquées et Industrielles (SMAI 2017), Ronces-les-Bains, France, Juin 2017.

Understanding Protein Interactions: from Molecules to Organisms, Ecole Normale Supérieure, Lyon, April 2017.

CiE 2016 - Pursuit of the Universal, special session of the conference Computability in Europe 2016. Session on "Computation in Biological Systems", co-organized with Ion Petre, Université Paris 7, Paris, France, Juin-Juillet 2016.

5th Cross Disciplinary Genomics Symposium - Genomics and microbial communities, Université Pierre et Marie Curie, Paris, November 2015.

A day in the life of intrinsically disordered proteins: from computation to experiments, international symposium organised with Marco Punta and Sonia Longhi, Université Pierre et Marie Curie, Paris, October 2015.

4th Cross Disciplinary Genomics Symposium - Up-and-coming advances in genome sciences. Université Pierre et Marie Curie, Paris, 2014.

Protein-Protein Interactions on the Genomic Scale - International meeting organized in the framework of the programme of Excellence in Bioinformatics, Université Pierre et Marie Curie, Paris, France, October 2014.

Scientific Trends at the Interfaces: Bioinformatics - Scientific Visualisation - Summer School organized by the Institut du Calcul Scientifique, Université Pierre et Marie Curie, Roscoff, France, July-August 2014.

3rd Cross Disciplinary Genomics Symposium. Biological networks: current and future challenges. Université Pierre et Marie Curie, 2013.

Computational Molecular Biology, special session of the meeting CiE 2013 - Computability in Europe 2013: The Nature of Computation, co-organized with Jens Stoye. Milan, Italy, July 2013.

2nd Cross Disciplinary Genomics Symposium: from Genome to Ecosystem, international symposium, Université Pierre et Marie Curie, 2012.

Scientific Trends at the Interfaces: Biomathematics - Bioinformatics, summer school organized by the "Institut du Calcul Scientifique", Université Pierre et Marie Curie, Roscoff, France, 2012.

Discrete and Topological Models in Mathematical Biology, conference following the meeting organised by the AMS, University of Florida at Tampa, USA, 2012.

Discrete Models in Molecular Biology, special session organised at the annual AMS conference, University of Florida at Tampa, USA, 2012.

1st Cross Disciplinary Genomics Symposium, international symposium, Université Pierre et Marie Curie, 2011.

CiE 2009 - Mathematical Theory and Computational Practice, special session of the conference "Computability in Europe 2009" on the theme "Computation in Biological Systems: Theory and Practice" organized with Erzsébet Csuhaj-Varjù, University of Heidelberg, Germany, june 2009.

CiE 2006 - Logical approaches to computational barriers, special session of the conference "Computability in Europe 2006" on the theme"Proofs and Computation" organized with Thomas Strahm, University of Wales in Swansea, England, june 2006.

Interface entre Mathématiques et Biologie, session organized for the meeting of young mathematicians "Mathématiques et Interactions", Institut Henri Poincare, Paris, France, 2006.

Macromolecular Networks, meeting organized by the Institut des Hautes Etudes Scientifiques and the Génopole. Co-organizers: M.Gromov (IHES), F.Képès (CNRS - Génopole d'Evry), P.Bourgine (CREA). Institut Pasteur, July 8-11 2002.

Regulatory protein interplay and traffic on DNA, symposium co-organized with: M.Gromov (IHES),
F.Képès (CNRS - Génopole d'Evry), P.Bourgine (CREA). Génopole, Evry, July 12-13 2002.

Folding and Self-Assembly of Macromolecules, meeting at the Institut des Hautes Etudes Scientifiques (Bures-sur-Yvette), December 2001. Co-organisers: M. Gromov (IHES), F. Képès (CNRS - Genopole d'Evry) and E. Westhof (Université Louis Pasteur, Strasbourg).

Patterns Formation in Biology, Vision and Dynamics, meeting at the Institut des Hautes Etudes Scientifiques, Bures-sur-Yvette, December 1997. Co-organiser: M. Gromov (IHES).

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Organiser

RECOMB2018, Sorbonne Université, Paris, France, 2018.

WoLLIC 2004, 11th Workshop on Logic, Language, Information and Computation, Université Paris 12, Paris, France, July 2004. Co-organisers: G. Bellin (Verona, Italy), P. Cegielski (Paris, France), R. de Queiroz (Récife, Brasil), A. Grisi de Oliveira (Récife, Brasil).

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Programme Committee member

ISMB/ECCB 2023, for the session "Proceedings", Lyon, France, 2023.

ECCB 2022 - the European Conference on Computational Biology, for the session "Proteins", Sitges, Barcelona, Spain, 2022.

ISMB/ECCB 2021, Lyon, France, 2021.

ECCB 2020 - the European Conference on Computational Biology, for the session "Proteins", Sitges, Barcelona, Spain, 2020.

WABI 2020 - The 20th Workshop on Algorithms in Bioinformatics, Pisa, Italy, 2020.

RECOMB-CG 2019 - 17th RECOMB Comparative Genomics Satellite Workshop, Montpellier, France, 2019.

ISMB/ECCB 2019, for the session "Function COSI", Basel, Switzerland, 2019.

RECOMB-CG 2018 - 16th RECOMB Comparative Genomics Satellite Workshop, Magog-Orford, Canada, 2018.

WABI 2018 - The 18th Workshop on Algorithms in Bioinformatics, Helsinki, Finland, 2018.

CiE 2018 - Computability in Europe 2018, Kiel, Germany, 2018.

WABI 2017 - The 17th Workshop on Algorithms in Bioinformatics, participating confer- ence in the 8th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM BCB), Boston, MA, 2017.

WABI 2016 - The 16th Workshop on Algorithms in Bioinformatics, participating conference in ALGO 2016, Aarhus, Denmark, 2016.

Lyon SysBio2015 - Systems Biology Conference, Lyon, France, 2015.

BMTL 2015 - Bringing Maths to Life, Naples, Italie, 2015.

CiE 2015: Evolving Computability, Bucharest, Romania, 2015.

ECCB'14 - European Conference on Computational Biology, Strasbourg, France, 2014.

Lyon SysBio2014 - Systems Biology Conference, Lyon, France, 2014.

BSB 2013 - Brazilian Symposium on Bioinformatics, Recife, Pernambuco, Brazil, 2013.

The 2nd International Workshop on Pattern Recognition in Proteomics, Structural Biology and Bioinformatics (PRPSBB2013), Naples, Italy, 2013.

2nd annual IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology, Systems Biology Track, University of California at San Diego, USA, 2012.

ECCB'12 - 11th European Conference on Computational Biology, Basel, Switzerland, 2012.

BSB 2012 - Brazilian Symposium on Bioinformatics, Campo Grande, Brasil, 2012.

TAMC 2012 - 9th Annual Conference on Theory and Applications of Models of Computation. Institute of Software, Chinese Academy of Sciences, Beijing, Chine, 2012.

MFCS 2011 - 36th International Symposium on Mathematical Foundations of Computer Science, Warsaw, Pologne, 2011.

IPG - Integrative Post-Genomics, Lyon's International Multidisciplinary Meeting on Post-Genomics, Lyon, France, 2010.

CiE 2010: Programs, Proofs, Processes, Ponta Delgada, Azores, Portugal, June 2010.

IPG (Integrative Post-Genomics), Lyon's International Multidisciplinary Meeting on Post-Genomics, Lyon, France, November 2009.

Development in Computational Models, international workshop organized as a ”one-day satellite” meeting of the conference ICALP, Rhodes, Greece, 2009.

CiE 2009 - Mathematical Theory and Computational Practice, special session "Computation in Biological Systems: Theory and Practice" organised with Erzsébet Csuhaj-Varjú, University of Heidelberg, Allemagne, june 2009.

JOBIM 2009, Nantes, France, June 2009.

TAMC2009 - The 6th Annual Conference on Theory and Applications of Models of Computation, Changsha, China, May 2009.

DNA 14 - The 14th International Meeting on DNA Computing, Prague, Czech Republic, June 2-6, 2008.

Development in computational models, satellite workshop at LICS and ICALP, Wroclaw, Polland, July 15, 2007.

DNA 13 - The 13th International Meeting on DNA Computing, Memphis, USA, June 4-8, 2007.

Workshop on Synchronizing Automata, a satellite workshop of ICALP'2004, Turku, Finland, July 2004.

DNA 10 - The 10th International Meeting on DNA Computing, Universitá degli Studi di Milano, Bicocca, Italy, June 7-10, 2004.

European Women in Mathematics Annual Meeting, CIRM Marseille, France, November 2003. Responsible for the session "Bio-Mathematics".

WoLLIC 2003 - 10th Workshop on Logic, Language, Information and Computation, Ouro Preto, Minas Gerais, Brasil, July 29 - August 1, 2003.

CSL'98, annual conference of the European Association of Computer Science Logic (EACSL). Brno, Czech Republic, August 31 - September 4, 1998.

Winter Meeting of the Association of Symbolic Logic, Baltimore, USA, January 9-10, 1998.

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Member of the PhD/HDR Committee of

Yogesh Kalkoti, IIT, Dehli, India, 2023 (report)
Maureen Muscat, Sorbonne Université, 2022
Vincent Mallet, Ecole des Mines Paristech et Institut Pasteur, 2022 (report)
Coline Gianfrotta, Université Paris-Saclay, 2022
Emmanuelle Becker (HDR), Université de Lille, 2022
Virgilio Kmetzsch, Institut du Cerveau et de la Moelle, Sorbonne Université, 2022
Carole Duchene, Sorbonne Université, 2022
Jessica Andreani (HDR), CEA et Université Paris-Saclay, 2022 (report)
Victor-Bogdan Popescu, Abo Akademi University, Turku, Finland,2022 (report)
Rayan Chikhi (HDR), Institut Pasteur et Sorbonne Université, 2021
Edi Prifti, IRD and ICAN, Sorbonne Université, 2021
Prithika Sritharan, University of East Anglia, Norwich, Angleterre, 2021 (report and examination)
Nicolay Romashchenko, Université de Montpellier, 2021
Adèle Weber, Sorbonne Université, 2021
Maxence Queyrel, Sorbonne Université, 2021
Nika Abdollahi, Sorbonne Université, 2021
Hugues Aschard (HDR), Institut Pasteur, 2021
Frédéric Célerse, Chimie Théorique, Sorbonne Université, 2020
Judith Abécassis, Ecole des Mines Paristech et Institut Curie, 2020 (report)
Sharad Goulam, Ecole Normale de Paris-Saclay, 2020 (report)
Nataliya Sokolovska (HDR), Sorbonne Université, 2019
Florian Thibord, Sorbonne Université, 2019
Léopold Carron, Physique, Sorbonne Université, 2019
Giancarlo Croce, Sorbonne Université, 2019
Félix Aviat, Chimie Théorique, Sorbonne Université, 2019
Arianne Bassignani, INRA-Jouy-en-Josas et Université Paris-Saclay, 2019
Maude Jusot, Sorbonne University, Paris, 2018
Alexandra Zaharia, University Paris-Saclay, Orsay, 2018
Kara Martin, University of East Anglia, Norwich, England, 2018 (examiner)
Marie Bricage, University Paris-Saclay, UVSQ, Versailles, 2018
Seyed Ziaeddin Alborzi, INRIA, Nancy, 2018
Pierre Nicolas (HDR), INRA et University Paris-Saclay, 2018
Grégoire Genuys, IRCAM, Université Pierre et Marie Curie, 2017
Ofir Shukron, Ecole Normale Supérieure, Paris, 2017
Aubin Samacoits, Institut Pasteur et UPMC, Paris, 2017
Meilin Tian, Ecole Normale Supérieure, Paris, 2017
Marc Lensink (HDR), Université de Lille, 2017
Juliette Martin (HDR), Université de Lyon 1, 2017 (report)
Laurent Gueguen (HDR), Université de Lyon 1, 2017 (report)
Aleksandra Nivina, Université Denis Diderot et Institut Pasteur, 2016
François Bertaux, Université Pierre et Marie Curie et INRIA, 2016
Mélanie Boudard, Université de Paris Sud, Orsay, 2016
Joseph Lucas, Ecole Normale Supérieure de Paris, 2016
Abdelkader Behdenna, UPMC et Collège de France, 2016
Manuel Binet, LIRMM, Université de Montpellier, 2015
Alexandre Cormier, Station Marine de Roscoff, UPMC, 2015
Isidro Cortés-Ciriano, Institut Pasteur et UPMC, 2015
Elisa Brambilla, ENS Cachan, 2014
Francesca Nadalin, Università di Udine, 2014 (report)
Angela Falciatore (HDR), Université Pierre et Marie Curie, 2013
Stefano Beretta, Università di Milano-Bicocca, Italy, 2013
Philippe Rinaudo, Université de Paris Sud, Orsay, 2012
Sandro Morganella, University of Sannio, Italy, 2012 (report)
Gwenael Piganeau (HDR), Station Océanographique de Banyuls-sur-Mer, UPMC, 2012
Aleksandra Walczak (HDR), Ecole Normale Supérieure, Paris, 2012
David Parsons, INSA, Lyon, 2011
Lamia Benamara, Université Pierre et Marie Curie, 2011
Marco Cosentino-Lagomarsino (HDR), Université Pierre et Marie Curie, 2011
Edi Prifti, Université Pierre et Marie Curie, 2011
Ivan Noyer, Université Pierre et Marie Curie, 2010
Serghei Verlan (HDR), Université Paris 12, 2010
Cristian Del Fabbro, Universitá di Udine, Italy, 2010 (report)
Thomas Bourquard, Université de Paris 11, 2009
Uma Maheswari, ENS Biologie, Université de Paris 11, 2009 (report)
Olivia Doppelt, Université de Paris 7, 2009
Jerôme Dabin, Station Biologique de Roscoff, Université de Paris 6, 2008
Florent Becker, Ecole Normale Supérieure de Lyon, France, 2008 (report)
Stefan Heztl, Technische Universitat Wien, Autriche, 2007 (report)
Fabien Tarissan, Université de Paris 7, 2006
Sarah Djebali, Université d'Evry, 2006
Cyril Deremble, IBPC, Université de Paris 6, 2006
Julien Fayolle, INRIA, Université de Paris 6, 2006
Frédéric Chataigner, LIAFA, Université de Paris 7, 2005
Jerome Waldispuhl, LIX, Ecole Polytechnique, 2004
Eugenio Chinchilla, Equipe de Logique, Université de Paris 7, 2001
Férial Benachour, LACL, Université de Paris 12, 2001

Member of the PHD Middle-way committee of

Amira Boukherissa, Universite Paris Saclay, 2022, 2023
Jeanne Trinquier, Sorbonne Université, 2021, 2022
Olivier Dennler, Université de Rennes, 2020, 2021
Nika Abdollahi, Sorbonne University, 2018.
Magali Semeria, Université Claude Bernard Lyon 1, 2013, 2014
Aleksandra Nivina, Université Denis Diderot et Institut Pasteur, 2013, 2014, 2015
Vittore Scolari, Université Pierre et Marie Curie, 2012
Philippe Esling, IRCAM et Université Pierre et Marie Curie, 2011
Singh Param Priya, Université Pierre et Marie Curie, 2011

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Alessandra Carbone - Alessandra DOT Carbone AT lip6 DOT fr
Génomique Analytique