Uses of Class
jprotein.tree.data.SimpleNode

Packages that use SimpleNode
jprotein.tree.data   
jprotein.tree.tools   
 

Uses of SimpleNode in jprotein.tree.data
 

Subclasses of SimpleNode in jprotein.tree.data
 class Node
           
 

Constructors in jprotein.tree.data with parameters of type SimpleNode
VisualNode(SimpleNode node, VisualLeaf left, VisualLeaf right)
           
 

Uses of SimpleNode in jprotein.tree.tools
 

Methods in jprotein.tree.tools with parameters of type SimpleNode
 Leaf Tree.getLeaf(SimpleNode node, int direction)
           
 Leaf Tree.getLeaf(SimpleNode root, Sequence alignment)
           
 java.util.Vector Tree.getNodeDistance(SimpleNode root, double distance)
           
 java.util.Vector Tree.getNodePartition(SimpleNode root, double maxDistance)
           
 double Tree.getPathDistance(SimpleNode root, PathIndex pathIndex)
           
 PathIndex Tree.getPathIndex(SimpleNode root, Leaf leaf)
           
 java.util.Vector Tree.getTraceAnalysis(SimpleNode root)
           
 double Tree.getVertice(SimpleNode node, int direction)
           
 void Tree.moveRoot(SimpleNode root, PathIndex pathIndex, double distance)
           
 void Tree.rootMidTree(SimpleNode root, Leaf leaf1, Leaf leaf2)
           
 void Tree.setLeaf(SimpleNode node, int direction, Leaf leaf)
           
 void Tree.setVertice(SimpleNode node, int direction, double distance)
           
 void Tree.shiftRoot(SimpleNode root, int direction1, int direction2)
           
 void Tree.translateRoot(SimpleNode root, int direction, double distance)