jprotein.io.net
Class BlastClient
java.lang.Object
jprotein.io.net.WebClient
jprotein.io.net.BlastClient
- All Implemented Interfaces:
- Format
public class BlastClient
- extends WebClient
- implements Format
Constructor Summary |
BlastClient(java.lang.String url,
java.lang.String database,
java.lang.String matrix,
int maxResults,
double eValue,
int gap_exist,
int gap_ext)
|
Methods inherited from class java.lang.Object |
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
BlastClient
public BlastClient(java.lang.String url,
java.lang.String database,
java.lang.String matrix,
int maxResults,
double eValue,
int gap_exist,
int gap_ext)
setDatabase
public void setDatabase(java.lang.String database)
setExpectedValue
public void setExpectedValue(double eValue)
setGapCosts
public void setGapCosts(int gap_exist,
int gap_ext)
setMatrix
public void setMatrix(java.lang.String matrix)
setMaxResults
public void setMaxResults(int maxResults)
setQuerySequence
public void setQuerySequence(Sequence sequence)
setQuerySequence
public void setQuerySequence(java.lang.String sequence)
getDatabase
public java.lang.String getDatabase()
getExpectedValue
public double getExpectedValue()
getGapCosts
public java.lang.String getGapCosts()
getMatrix
public java.lang.String getMatrix()
getMaxResults
public int getMaxResults()
getQuerySequence
public Sequence getQuerySequence()
getData
public java.util.Vector getData()
- Specified by:
getData
in interface Format
initData
public java.util.Vector initData()
sendPutCommand
public void sendPutCommand()
throws java.lang.Exception
- Throws:
java.lang.Exception
sendGetCommand
public java.util.Vector sendGetCommand()
throws java.lang.Exception
- Throws:
java.lang.Exception