|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectjava.util.AbstractCollection
java.util.AbstractList
java.util.Vector
jprotein.tree.data.Leaf
public class Leaf
Constructor Summary | |
---|---|
Leaf()
|
|
Leaf(Sequence ali,
java.util.Vector distances)
|
Method Summary | |
---|---|
void |
addDistance(double d)
|
boolean |
equals(java.lang.Object o)
|
java.util.Vector |
getBackTrace()
|
java.util.Vector |
getConservedResidue()
|
double |
getDistance(int index)
|
java.lang.Double |
getDoubleDistance(int index)
|
Sequence |
getSequence()
|
double |
getSum()
|
void |
initConservedResidue()
|
void |
removeDistance(int index)
|
void |
resetConservedResidue()
|
void |
setBackTrace(java.util.Vector backtrace)
|
void |
setConservedResidue(java.util.Vector conservedIndex)
|
java.lang.String |
toString()
|
void |
unload()
|
Methods inherited from class java.util.Vector |
---|
add, add, addAll, addAll, addElement, capacity, clear, clone, contains, containsAll, copyInto, elementAt, elements, ensureCapacity, firstElement, get, hashCode, indexOf, indexOf, insertElementAt, isEmpty, lastElement, lastIndexOf, lastIndexOf, remove, remove, removeAll, removeAllElements, removeElement, removeElementAt, retainAll, set, setElementAt, setSize, size, subList, toArray, toArray, trimToSize |
Methods inherited from class java.util.AbstractList |
---|
iterator, listIterator, listIterator |
Methods inherited from class java.lang.Object |
---|
getClass, notify, notifyAll, wait, wait, wait |
Methods inherited from interface java.util.List |
---|
iterator, listIterator, listIterator |
Constructor Detail |
---|
public Leaf()
public Leaf(Sequence ali, java.util.Vector distances)
Method Detail |
---|
public Sequence getSequence()
public java.lang.String toString()
toString
in class java.util.Vector
public double getSum()
public void addDistance(double d)
public void removeDistance(int index)
public double getDistance(int index)
public java.lang.Double getDoubleDistance(int index)
public void unload()
public java.util.Vector getConservedResidue()
public void setConservedResidue(java.util.Vector conservedIndex)
public void resetConservedResidue()
public java.util.Vector getBackTrace()
public void setBackTrace(java.util.Vector backtrace)
public void initConservedResidue()
public boolean equals(java.lang.Object o)
equals
in interface java.util.Collection
equals
in interface java.util.List
equals
in class java.util.Vector
|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |