Methods in jprotein.tree.tools with parameters of type SimpleNode |
Leaf |
Tree.getLeaf(SimpleNode node,
int direction)
|
Leaf |
Tree.getLeaf(SimpleNode root,
Sequence alignment)
|
java.util.Vector |
Tree.getNodeDistance(SimpleNode root,
double distance)
|
java.util.Vector |
Tree.getNodePartition(SimpleNode root,
double maxDistance)
|
double |
Tree.getPathDistance(SimpleNode root,
PathIndex pathIndex)
|
PathIndex |
Tree.getPathIndex(SimpleNode root,
Leaf leaf)
|
java.util.Vector |
Tree.getTraceAnalysis(SimpleNode root)
|
double |
Tree.getVertice(SimpleNode node,
int direction)
|
void |
Tree.moveRoot(SimpleNode root,
PathIndex pathIndex,
double distance)
|
void |
Tree.rootMidTree(SimpleNode root,
Leaf leaf1,
Leaf leaf2)
|
void |
Tree.setLeaf(SimpleNode node,
int direction,
Leaf leaf)
|
void |
Tree.setVertice(SimpleNode node,
int direction,
double distance)
|
void |
Tree.shiftRoot(SimpleNode root,
int direction1,
int direction2)
|
void |
Tree.translateRoot(SimpleNode root,
int direction,
double distance)
|