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P

paintComponent(Graphics) - Method in class jprotein.tree.VisualTree
 
PairwiseAlignment - Class in jprotein.data.datatype
 
PairwiseAlignment() - Constructor for class jprotein.data.datatype.PairwiseAlignment
 
parseGI(Vector) - Method in class jprotein.io.net.PsiBlastClient
 
parseGI(Vector) - Method in class jprotein.io.net.PsiBlastClientOld
 
parsePGR(Vector) - Method in class jprotein.io.net.PsiBlastClient
 
PathIndex - Class in jprotein.tree.data
 
PathIndex() - Constructor for class jprotein.tree.data.PathIndex
 
PDB - Class in jprotein.data.dataformat.parser
Classe pour recuperer et stocker les informations d'un fichier pdb.
PDB() - Constructor for class jprotein.data.dataformat.parser.PDB
 
PdbCodeClient - Class in jprotein.io.net
Classe pour r�cup�rer une structure chez un client web via un code pdb
PdbCodeClient() - Constructor for class jprotein.io.net.PdbCodeClient
Initialisation du client web
PdbFileReader - Class in jprotein.io.file
Classe pour lire un fichier pdb en le stockant ligne par ligne dans un vecteur.
PdbFileReader(String) - Constructor for class jprotein.io.file.PdbFileReader
 
PdbFileReader2 - Class in jprotein.io.file
 
PdbFileReader2(String) - Constructor for class jprotein.io.file.PdbFileReader2
 
PdbFileTransform - Class in jprotein.io.file
 
PdbFileTransform(String, String, Vector) - Constructor for class jprotein.io.file.PdbFileTransform
 
PdbSequenceInfo - Class in jprotein.data.dataformat.info
Classe pour stocker les infos sur les residus 3D d'une sequence et leurs proprietes (temperature)
PdbSequenceInfo(Sequence3D, Vector) - Constructor for class jprotein.data.dataformat.info.PdbSequenceInfo
 
pNorm(double) - Static method in class jprotein.tools.Statistic
 
pNorm(double, double) - Static method in class jprotein.tools.Statistic
 
pNorm(double) - Static method in class jprotein.tree.tools.Statistic
 
pNorm(double, double) - Static method in class jprotein.tree.tools.Statistic
 
postSwap() - Method in class jprotein.rasmol.CapturingCanvas3D
 
printProgress() - Method in class jprotein.ProgressIndicator
 
product(Vector, Vector) - Static method in class jprotein.tools.Statistic
 
product(Vector, Vector) - Static method in class jprotein.tree.tools.Statistic
 
ProgressIndicator - Class in jprotein
 
ProgressIndicator(String, int) - Constructor for class jprotein.ProgressIndicator
 
ProgressIndicator(String) - Constructor for class jprotein.ProgressIndicator
 
ProgressIndicator(String, boolean) - Constructor for class jprotein.ProgressIndicator
 
progressViewable() - Method in class jprotein.ProgressIndicator
 
Property - Class in jprotein.rasmol
 
Property(Color3f) - Constructor for class jprotein.rasmol.Property
 
Property(Color3f, Color3f, Color3f, Color3f) - Constructor for class jprotein.rasmol.Property
 
Property(Color3f, Vector) - Constructor for class jprotein.rasmol.Property
 
Property(Vector, Color3f, Color3f, Color3f, Color3f) - Constructor for class jprotein.rasmol.Property
 
ProteinEngine3D - Class in jprotein.rasmol
 
ProteinEngine3D() - Constructor for class jprotein.rasmol.ProteinEngine3D
 
ProteinEngine3D(Vector, Vector) - Constructor for class jprotein.rasmol.ProteinEngine3D
 
ProtViewer - Class in jprotein.rasmol
 
ProtViewer() - Constructor for class jprotein.rasmol.ProtViewer
 
ProxList - Class in jprotein.cluster.data
 
ProxList(Residue3D, int) - Constructor for class jprotein.cluster.data.ProxList
 
ProxNode - Class in jprotein.cluster.data
 
ProxNode(ProxList, float) - Constructor for class jprotein.cluster.data.ProxNode
 
PsiBlastClient - Class in jprotein.io.net
 
PsiBlastClient(String, String, String, int, double, int, int, int) - Constructor for class jprotein.io.net.PsiBlastClient
 
PsiBlastClientOld - Class in jprotein.io.net
 
PsiBlastClientOld(String, String, String, int, double, int, int, int) - Constructor for class jprotein.io.net.PsiBlastClientOld
 
PsiJET - Class in jprotein
 
PsiJET() - Constructor for class jprotein.PsiJET
 

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