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java.lang.Objectjava.util.AbstractCollection
java.util.AbstractList
java.util.Vector
jprotein.data.datatype.Sequence
jprotein.data.datatype.Alignment
public class Alignment
Constructor Summary | |
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Alignment()
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Alignment(java.lang.String sequenceName,
java.lang.String residueSequence)
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Method Summary | |
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int |
getSequencePosition(int index)
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int |
nonGappedSequenceLength()
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Methods inherited from class jprotein.data.datatype.Sequence |
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equals, getNonGappedPosition, getNonGappedSequenceLength, getResidue, getSequence, getSequenceLength, getSequenceName, isIdentical, setSequence, setSequenceName, toFasta, toString |
Methods inherited from class java.util.Vector |
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add, add, addAll, addAll, addElement, capacity, clear, clone, contains, containsAll, copyInto, elementAt, elements, ensureCapacity, firstElement, get, hashCode, indexOf, indexOf, insertElementAt, isEmpty, lastElement, lastIndexOf, lastIndexOf, remove, remove, removeAll, removeAllElements, removeElement, removeElementAt, retainAll, set, setElementAt, setSize, size, subList, toArray, toArray, trimToSize |
Methods inherited from class java.util.AbstractList |
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iterator, listIterator, listIterator |
Methods inherited from class java.lang.Object |
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getClass, notify, notifyAll, wait, wait, wait |
Methods inherited from interface java.util.List |
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iterator, listIterator, listIterator |
Constructor Detail |
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public Alignment()
public Alignment(java.lang.String sequenceName, java.lang.String residueSequence)
Method Detail |
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public int getSequencePosition(int index)
public int nonGappedSequenceLength()
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