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java.lang.Objectjava.util.AbstractCollection
java.util.AbstractList
java.util.Vector
jprotein.data.datatype.Sequence
jprotein.data.datatype.SequenceInformation
public class SequenceInformation
Constructor Summary | |
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SequenceInformation()
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Method Summary | |
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boolean |
expectChecked()
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int |
getEndOverlap()
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double |
getExpectValue()
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int |
getIdentity()
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int |
getStartOverlap()
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boolean |
identityChecked()
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boolean |
overlapChecked()
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void |
setEndOverlap(int end)
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void |
setExpectValue(double expect)
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void |
setIdentity(int identity)
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void |
setStartOverlap(int start)
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Methods inherited from class jprotein.data.datatype.Sequence |
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equals, getNonGappedPosition, getNonGappedSequenceLength, getResidue, getSequence, getSequenceLength, getSequenceName, isIdentical, setSequence, setSequenceName, toFasta, toString |
Methods inherited from class java.util.Vector |
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add, add, addAll, addAll, addElement, capacity, clear, clone, contains, containsAll, copyInto, elementAt, elements, ensureCapacity, firstElement, get, hashCode, indexOf, indexOf, insertElementAt, isEmpty, lastElement, lastIndexOf, lastIndexOf, remove, remove, removeAll, removeAllElements, removeElement, removeElementAt, retainAll, set, setElementAt, setSize, size, subList, toArray, toArray, trimToSize |
Methods inherited from class java.util.AbstractList |
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iterator, listIterator, listIterator |
Methods inherited from class java.lang.Object |
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getClass, notify, notifyAll, wait, wait, wait |
Methods inherited from interface java.util.List |
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iterator, listIterator, listIterator |
Constructor Detail |
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public SequenceInformation()
Method Detail |
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public void setStartOverlap(int start)
public int getStartOverlap()
public void setEndOverlap(int end)
public int getEndOverlap()
public boolean overlapChecked()
public void setIdentity(int identity)
public int getIdentity()
public boolean identityChecked()
public void setExpectValue(double expect)
public double getExpectValue()
public boolean expectChecked()
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