A B C D E F G H I J L M N O P R S T U V W Z

A

access2PDB(Sequence3D, double, float) - Static method in class jprotein.TestAccess

addAlignment(Sequence) - Method in class jprotein.data.datatype.MultiAlignment

addAtom(String, Point3f) - Method in class jprotein.data.datatype.Residue3D

Ajout d'atomes

addDirection(int) - Method in class jprotein.tree.data.PathIndex

addDistance(double) - Method in class jprotein.tree.data.Leaf

addPairwiseAlignment(PairwiseAlignment) - Method in class jprotein.data.datatype.MultiPairwiseAlignment

addProxNode(ProxNode) - Method in class jprotein.cluster.data.ProxList

addResidue(ProxList) - Method in class jprotein.cluster.data.Cluster

addResidue(String) - Method in class jprotein.data.datatype.Sequence3D

addResidue(Residue3D) - Method in class jprotein.data.datatype.Sequence3D

Alignment - Class in jprotein.data.datatype

Alignment() - Constructor for class jprotein.data.datatype.Alignment

Alignment(String, String) - Constructor for class jprotein.data.datatype.Alignment

allPreliminaryChecked() - Method in class jprotein.data.dataformat.info.BlastSequenceInfo

analyse(String, double, double) - Static method in class jprotein.TestAccess

Atom - Class in jprotein.data.datatype

Classe représentant les atomes ainsi que leurs coordonnées 3D et gérant leur accessibilité par rapport à une sonde (paramètre "probe_radius" du fichier de configuration).

Atom(String) - Constructor for class jprotein.data.datatype.Atom

Atom(String, Point3f) - Constructor for class jprotein.data.datatype.Atom

Atom1 - Class in jprotein.data.datatype

Atom1(String, Point3f) - Constructor for class jprotein.data.datatype.Atom1