AdditionalInfoFile = "" ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 Looking for randomclass.txt... Loading sequence... Loaded... Getting seq... Got NC_004307 1729 CDS features found CodonUsage sphere 0.008485311 0.025324572 0.032142848 0.009026394 0.004227017 0.037093915 0.015438074 0.0059096925 0.0013480166 0.012457425 0.002145567 0.0029634472 0.002287875 0.03797904 0.023033569 0.013505187 0.007324953 0.013000072 0.02676329 0.00897948 0.0038079123 0.012229106 0.02672263 0.004514761 0.0050151846 0.02858671 0.0058831074 0.014638959 0.0020720672 0.021088172 0.04252977 0.0077221645 0.02630978 0.040767338 0.030319426 0.024519201 0.0123213725 0.060018014 0.026949385 0.012491829 0.0074828994 0.05172349 0.0054890234 0.015941625 0.005840884 0.024927361 0.03969768 0.007168571 0.0 0.018551648 0.0 0.00828045 0.0038000932 0.024944562 0.013342549 0.003962731 0.0 0.007747186 0.013594326 0.0016983133 0.0011744321 0.029851843 0.012488701 0.0043489956 0.4 255 0 0 aaa:0.008 aac:0.025 aag:0.032 aat:0.009 aca:0.004 acc:0.037 acg:0.015 act:0.006 aga:0.001 agc:0.012 agg:0.002 agt:0.003 ata:0.002 atc:0.038 atg:0.023 att:0.014 caa:0.007 cac:0.013 cag:0.027 cat:0.009 cca:0.004 ccc:0.012 ccg:0.027 cct:0.005 cga:0.005 cgc:0.029 cgg:0.006 cgt:0.015 cta:0.002 ctc:0.021 ctg:0.043 ctt:0.008 gaa:0.026 gac:0.041 gag:0.030 gat:0.025 gca:0.012 gcc:0.060 gcg:0.027 gct:0.012 gga:0.007 ggc:0.052 ggg:0.005 ggt:0.016 gta:0.006 gtc:0.025 gtg:0.040 gtt:0.007 taa:0.000 tac:0.019 tag:0.000 tat:0.008 tca:0.004 tcc:0.025 tcg:0.013 tct:0.004 tga:0.000 tgc:0.008 tgg:0.014 tgt:0.002 tta:0.001 ttc:0.030 ttg:0.012 ttt:0.004 Number of points = 1729 Iteration 0 First 864 genes (50%) aaa:0.005 aac:0.030 aag:0.041 aat:0.006 aca:0.002 acc:0.043 acg:0.013 act:0.004 aga:0.000 agc:0.011 agg:0.001 agt:0.001 ata:0.001 atc:0.044 atg:0.023 att:0.011 caa:0.004 cac:0.015 cag:0.029 cat:0.006 cca:0.002 ccc:0.012 ccg:0.029 cct:0.003 cga:0.003 cgc:0.032 cgg:0.003 cgt:0.014 cta:0.001 ctc:0.024 ctg:0.046 ctt:0.006 gaa:0.027 gac:0.048 gag:0.035 gat:0.020 gca:0.009 gcc:0.068 gcg:0.023 gct:0.011 gga:0.004 ggc:0.059 ggg:0.003 ggt:0.015 gta:0.004 gtc:0.028 gtg:0.042 gtt:0.005 taa:0.000 tac:0.023 tag:0.000 tat:0.005 tca:0.002 tcc:0.029 tcg:0.011 tct:0.003 tga:0.000 tgc:0.007 tgg:0.013 tgt:0.001 tta:0.000 ttc:0.033 ttg:0.008 ttt:0.002 CodonUsageIt0 sphere 0.0053899726 0.030101946 0.04128275 0.0055457023 0.0020648586 0.042704504 0.01275252 0.0042940984 3.6913672E-4 0.010733804 0.001110294 0.0013237011 5.6812447E-4 0.044207007 0.023154678 0.010615564 0.0037778835 0.015123069 0.028729217 0.0060330783 0.0017591672 0.011994059 0.029366557 0.002921371 0.0027137315 0.032011073 0.002558002 0.014304047 0.0010410809 0.02372857 0.0463007 0.0057821805 0.026644172 0.047832042 0.035422705 0.019950686 0.008758346 0.06759527 0.022583669 0.010889533 0.00425084 0.059321422 0.0026358669 0.01526438 0.0035558247 0.02784675 0.04197488 0.005289037 0.0 0.022595204 0.0 0.005407276 0.0016265087 0.028504275 0.010869346 0.0025724215 0.0 0.0073740827 0.012994765 6.805958E-4 2.2494268E-4 0.03331459 0.0075153927 0.0021427232 0.2 0 255 0 Iteration 1 First 432 genes (25%) aaa:0.003 aac:0.033 aag:0.049 aat:0.004 aca:0.001 acc:0.046 acg:0.010 act:0.004 aga:0.000 agc:0.009 agg:0.001 agt:0.001 ata:0.000 atc:0.047 atg:0.022 att:0.008 caa:0.002 cac:0.017 cag:0.030 cat:0.004 cca:0.001 ccc:0.011 ccg:0.032 cct:0.003 cga:0.002 cgc:0.033 cgg:0.001 cgt:0.015 cta:0.001 ctc:0.026 ctg:0.047 ctt:0.005 gaa:0.026 gac:0.052 gag:0.040 gat:0.017 gca:0.007 gcc:0.070 gcg:0.018 gct:0.011 gga:0.003 ggc:0.063 ggg:0.001 ggt:0.015 gta:0.002 gtc:0.030 gtg:0.041 gtt:0.005 taa:0.000 tac:0.025 tag:0.000 tat:0.003 tca:0.001 tcc:0.032 tcg:0.008 tct:0.002 tga:0.000 tgc:0.007 tgg:0.013 tgt:0.000 tta:0.000 ttc:0.034 ttg:0.005 ttt:0.002 CodonUsageIt1 sphere 0.0032789542 0.033448573 0.048822384 0.0035868625 0.0011289974 0.046013396 0.009853069 0.0036246758 2.1067416E-4 0.009026578 7.724719E-4 5.996111E-4 2.5929126E-4 0.04749892 0.022461107 0.008453975 0.0020959377 0.016961971 0.029823897 0.003889369 9.5613656E-4 0.010809205 0.03150389 0.0026037164 0.0017286085 0.03292459 9.2372514E-4 0.014525713 7.076491E-4 0.0258535 0.04665622 0.00514261 0.025772471 0.05234983 0.03968777 0.017118625 0.0069900607 0.06985199 0.017691227 0.011273769 0.0028305964 0.062964566 0.0013234658 0.014952463 0.0022309853 0.03028306 0.041410975 0.0052452465 0.0 0.025248487 0.0 0.003284356 7.6707E-4 0.03161733 0.0081406655 0.0021661625 0.0 0.0068820226 0.012559421 4.8617113E-4 9.183233E-5 0.034474935 0.0046348316 0.0015233362 0.2 0 255 0 Iteration 2 First 207 genes (12%) aaa:0.002 aac:0.036 aag:0.055 aat:0.002 aca:0.001 acc:0.050 acg:0.007 act:0.004 aga:0.000 agc:0.007 agg:0.001 agt:0.000 ata:0.000 atc:0.048 atg:0.022 att:0.007 caa:0.001 cac:0.018 cag:0.030 cat:0.003 cca:0.001 ccc:0.009 ccg:0.033 cct:0.002 cga:0.001 cgc:0.031 cgg:0.000 cgt:0.014 cta:0.000 ctc:0.027 ctg:0.046 ctt:0.005 gaa:0.025 gac:0.055 gag:0.045 gat:0.016 gca:0.006 gcc:0.073 gcg:0.013 gct:0.013 gga:0.002 ggc:0.065 ggg:0.001 ggt:0.015 gta:0.001 gtc:0.032 gtg:0.039 gtt:0.006 taa:0.000 tac:0.027 tag:0.000 tat:0.002 tca:0.000 tcc:0.035 tcg:0.006 tct:0.002 tga:0.000 tgc:0.007 tgg:0.012 tgt:0.000 tta:0.000 ttc:0.034 ttg:0.003 ttt:0.001 CodonUsageIt2 sphere 0.0018155142 0.035793073 0.05477153 0.0022166162 7.9164864E-4 0.04997942 0.0069453972 0.00351492 8.444252E-5 0.0074731633 6.1220827E-4 3.1665945E-4 1.05553154E-4 0.048111126 0.02210283 0.0068187336 0.0012560826 0.01802848 0.030209312 0.0025543862 6.333189E-4 0.009352009 0.03310147 0.0024593885 0.0010238655 0.031169845 3.0610414E-4 0.014313008 4.2221262E-4 0.026694393 0.04593673 0.0045387857 0.024614995 0.055394296 0.044891756 0.015695754 0.005900421 0.073433325 0.012866929 0.012634712 0.0020055098 0.06485186 6.5442955E-4 0.014619111 0.0014671888 0.03230982 0.03864301 0.005720981 0.0 0.027380487 0.0 0.0022693928 3.588807E-4 0.035423636 0.0055732066 0.0019316226 0.0 0.006575961 0.012244166 3.0610414E-4 4.222126E-5 0.034368105 0.0032299263 0.001139974 0.2 0 255 0 Iteration 3 First 103 genes (6%) aaa:0.001 aac:0.038 aag:0.060 aat:0.002 aca:0.000 acc:0.052 acg:0.005 act:0.003 aga:0.000 agc:0.006 agg:0.000 agt:0.000 ata:0.000 atc:0.049 atg:0.022 att:0.006 caa:0.001 cac:0.018 cag:0.030 cat:0.002 cca:0.000 ccc:0.007 ccg:0.034 cct:0.002 cga:0.001 cgc:0.029 cgg:0.000 cgt:0.014 cta:0.000 ctc:0.026 ctg:0.045 ctt:0.004 gaa:0.024 gac:0.058 gag:0.050 gat:0.014 gca:0.005 gcc:0.075 gcg:0.009 gct:0.014 gga:0.001 ggc:0.067 ggg:0.000 ggt:0.015 gta:0.001 gtc:0.036 gtg:0.035 gtt:0.006 taa:0.000 tac:0.030 tag:0.000 tat:0.002 tca:0.000 tcc:0.039 tcg:0.004 tct:0.002 tga:0.000 tgc:0.006 tgg:0.012 tgt:0.000 tta:0.000 ttc:0.034 ttg:0.002 ttt:0.001 CodonUsageIt3 sphere 9.418413E-4 0.038123168 0.060128003 0.0017980606 4.4951515E-4 0.052207977 0.004987478 0.0032536336 2.1405483E-5 0.0059935357 4.067042E-4 2.1405485E-4 1.0702742E-4 0.04891153 0.021683756 0.0061647794 7.2778645E-4 0.017531091 0.030010488 0.0018194661 2.996768E-4 0.0074062976 0.034248773 0.0023974143 7.705974E-4 0.02900443 1.498384E-4 0.014427296 2.1405485E-4 0.026007663 0.04522979 0.004302502 0.023760088 0.058073077 0.05011024 0.014256053 0.0049232612 0.0745553 0.009011709 0.01393497 0.0012201126 0.06650684 3.2108225E-4 0.014705568 8.3481387E-4 0.035875592 0.034997966 0.0064858617 0.0 0.029732218 0.0 0.0015411949 1.7124387E-4 0.038529873 0.0036389322 0.0016268168 0.0 0.006143374 0.011601772 8.5621934E-5 6.421645E-5 0.03412034 0.0021619538 0.0010702742 0.2 0 255 0 Iteration 4 First 51 genes (3%) aaa:0.001 aac:0.040 aag:0.063 aat:0.001 aca:0.000 acc:0.054 acg:0.003 act:0.003 aga:0.000 agc:0.005 agg:0.000 agt:0.000 ata:0.000 atc:0.049 atg:0.021 att:0.005 caa:0.000 cac:0.018 cag:0.031 cat:0.001 cca:0.000 ccc:0.007 ccg:0.033 cct:0.003 cga:0.001 cgc:0.028 cgg:0.000 cgt:0.015 cta:0.000 ctc:0.026 ctg:0.045 ctt:0.004 gaa:0.022 gac:0.060 gag:0.054 gat:0.014 gca:0.004 gcc:0.073 gcg:0.007 gct:0.017 gga:0.001 ggc:0.065 ggg:0.000 ggt:0.015 gta:0.000 gtc:0.039 gtg:0.031 gtt:0.008 taa:0.000 tac:0.031 tag:0.000 tat:0.001 tca:0.000 tcc:0.042 tcg:0.002 tct:0.001 tga:0.000 tgc:0.006 tgg:0.011 tgt:0.000 tta:0.000 ttc:0.034 ttg:0.001 ttt:0.001 CodonUsageIt4 sphere 5.704739E-4 0.03960719 0.06336335 0.0011409478 2.8523695E-4 0.05354305 0.0032191027 0.003259851 0.0 0.004971273 3.2598508E-4 1.6299254E-4 4.0748135E-5 0.049020007 0.020618556 0.005378754 3.2598508E-4 0.018214418 0.031335317 0.0010594515 3.6673323E-4 0.0066826944 0.03320973 0.0026486288 6.5197016E-4 0.02774948 4.0748135E-5 0.015402796 1.2224441E-4 0.025915815 0.045148935 0.0040340656 0.021718757 0.05989976 0.05427652 0.013609878 0.004074814 0.07326515 0.006967931 0.017317958 9.3720714E-4 0.06483028 3.2598508E-4 0.014669329 4.8897765E-4 0.038751476 0.031090828 0.008394116 0.0 0.030724095 0.0 0.0011409478 1.6299254E-4 0.04192983 0.0022818956 0.0014669329 0.0 0.00590848 0.011124241 8.149627E-5 4.0748135E-5 0.033902448 0.0012631922 9.3720714E-4 0.2 0 255 0 Iteration 5 First 17 genes (1%) aaa:0.000 aac:0.041 aag:0.064 aat:0.001 aca:0.001 acc:0.058 acg:0.003 act:0.003 aga:0.000 agc:0.004 agg:0.000 agt:0.000 ata:0.000 atc:0.049 atg:0.021 att:0.005 caa:0.000 cac:0.022 cag:0.030 cat:0.001 cca:0.000 ccc:0.005 ccg:0.034 cct:0.002 cga:0.000 cgc:0.025 cgg:0.000 cgt:0.015 cta:0.000 ctc:0.026 ctg:0.043 ctt:0.003 gaa:0.020 gac:0.064 gag:0.057 gat:0.011 gca:0.003 gcc:0.072 gcg:0.006 gct:0.020 gga:0.001 ggc:0.065 ggg:0.000 ggt:0.014 gta:0.000 gtc:0.040 gtg:0.022 gtt:0.012 taa:0.000 tac:0.035 tag:0.000 tat:0.001 tca:0.000 tcc:0.040 tcg:0.002 tct:0.001 tga:0.000 tgc:0.006 tgg:0.015 tgt:0.000 tta:0.000 ttc:0.037 ttg:0.001 ttt:0.000 CodonUsageIt5 sphere 3.671072E-4 0.040748898 0.06412139 0.0011013215 6.1184535E-4 0.058247674 0.0025697504 0.0025697504 0.0 0.003671072 2.4473813E-4 2.4473813E-4 0.0 0.048825257 0.021292217 0.005139501 2.4473813E-4 0.022148801 0.029613314 9.789525E-4 1.2236906E-4 0.0048947628 0.033651493 0.0024473814 1.2236906E-4 0.025452765 0.0 0.015051395 1.2236906E-4 0.02618698 0.04319628 0.0029368575 0.020313265 0.06399902 0.057023983 0.010523739 0.0030592266 0.07232012 0.005628977 0.020068526 6.1184535E-4 0.064855605 2.4473813E-4 0.013582966 1.2236906E-4 0.039769948 0.021781694 0.0115026925 0.0 0.034997553 0.0 7.342144E-4 1.2236906E-4 0.040014684 0.0023250123 6.1184535E-4 0.0 0.0057513462 0.015296133 0.0 1.2236906E-4 0.03671072 6.1184535E-4 3.671072E-4 0.2 0 255 0 Iteration 6 First 17 genes (1%) aaa:0.000 aac:0.041 aag:0.064 aat:0.001 aca:0.001 acc:0.059 acg:0.003 act:0.003 aga:0.000 agc:0.003 agg:0.000 agt:0.000 ata:0.000 atc:0.049 atg:0.021 att:0.005 caa:0.000 cac:0.021 cag:0.030 cat:0.001 cca:0.000 ccc:0.005 ccg:0.034 cct:0.002 cga:0.000 cgc:0.026 cgg:0.000 cgt:0.016 cta:0.000 ctc:0.027 ctg:0.043 ctt:0.003 gaa:0.020 gac:0.064 gag:0.057 gat:0.010 gca:0.003 gcc:0.071 gcg:0.006 gct:0.022 gga:0.000 ggc:0.066 ggg:0.000 ggt:0.014 gta:0.000 gtc:0.040 gtg:0.022 gtt:0.012 taa:0.000 tac:0.034 tag:0.000 tat:0.001 tca:0.000 tcc:0.040 tcg:0.002 tct:0.001 tga:0.000 tgc:0.006 tgg:0.015 tgt:0.000 tta:0.000 ttc:0.036 ttg:0.000 ttt:0.000 CodonUsageIt6 sphere 2.53614E-4 0.040831853 0.06416434 0.001014456 6.34035E-4 0.059345677 0.00253614 0.002789754 0.0 0.003423789 2.53614E-4 2.53614E-4 0.0 0.048820693 0.020923154 0.005325894 2.53614E-4 0.021430383 0.029546032 8.87649E-4 1.26807E-4 0.00507228 0.03385747 0.002409333 1.26807E-4 0.025868628 0.0 0.01610449 1.26807E-4 0.02662947 0.04260715 0.002916561 0.020415926 0.06365711 0.056936342 0.009510525 0.003170175 0.071138725 0.005833122 0.02155719 3.80421E-4 0.065686025 2.53614E-4 0.013695156 1.26807E-4 0.040324625 0.022318032 0.011793051 0.0 0.03385747 0.0 7.60842E-4 1.26807E-4 0.04019782 0.002409333 6.34035E-4 0.0 0.005706315 0.014836419 0.0 1.26807E-4 0.03550596 3.80421E-4 1.26807E-4 0.2 0 255 0 Iteration 7 First 17 genes (1%) aaa:0.000 aac:0.042 aag:0.065 aat:0.001 aca:0.001 acc:0.060 acg:0.002 act:0.003 aga:0.000 agc:0.004 agg:0.000 agt:0.000 ata:0.000 atc:0.050 atg:0.018 att:0.005 caa:0.000 cac:0.021 cag:0.029 cat:0.001 cca:0.000 ccc:0.005 ccg:0.031 cct:0.002 cga:0.000 cgc:0.025 cgg:0.000 cgt:0.017 cta:0.000 ctc:0.028 ctg:0.045 ctt:0.003 gaa:0.019 gac:0.063 gag:0.060 gat:0.010 gca:0.003 gcc:0.070 gcg:0.006 gct:0.023 gga:0.000 ggc:0.066 ggg:0.000 ggt:0.013 gta:0.000 gtc:0.043 gtg:0.021 gtt:0.013 taa:0.000 tac:0.033 tag:0.000 tat:0.001 tca:0.000 tcc:0.041 tcg:0.002 tct:0.001 tga:0.000 tgc:0.005 tgg:0.015 tgt:0.000 tta:0.000 ttc:0.033 ttg:0.000 ttt:0.000 CodonUsageIt7 sphere 2.688172E-4 0.0422043 0.064650536 8.064516E-4 6.72043E-4 0.05954301 0.0018817204 0.0029569892 0.0 0.0036290323 2.688172E-4 2.688172E-4 0.0 0.049596775 0.017876344 0.0052419356 2.688172E-4 0.02123656 0.029301075 6.72043E-4 1.344086E-4 0.004973118 0.031182796 0.0021505377 1.344086E-4 0.025268817 0.0 0.016532257 1.344086E-4 0.028225806 0.044758063 0.003091398 0.019354839 0.06276882 0.059946235 0.010215053 0.0034946236 0.069758065 0.00577957 0.022715054 4.032258E-4 0.066397846 1.344086E-4 0.012903226 1.344086E-4 0.043010753 0.020967742 0.0125 0.0 0.033467744 0.0 8.064516E-4 1.344086E-4 0.040725805 0.0021505377 9.408602E-4 0.0 0.004973118 0.015188172 0.0 1.344086E-4 0.032795697 1.344086E-4 1.344086E-4 0.2 0 255 0 Iteration 8 First 17 genes (1%) aaa:0.000 aac:0.043 aag:0.064 aat:0.001 aca:0.001 acc:0.059 acg:0.001 act:0.003 aga:0.000 agc:0.004 agg:0.000 agt:0.000 ata:0.000 atc:0.050 atg:0.017 att:0.005 caa:0.000 cac:0.022 cag:0.029 cat:0.001 cca:0.000 ccc:0.004 ccg:0.034 cct:0.002 cga:0.000 cgc:0.024 cgg:0.000 cgt:0.016 cta:0.000 ctc:0.027 ctg:0.046 ctt:0.003 gaa:0.018 gac:0.064 gag:0.059 gat:0.011 gca:0.003 gcc:0.068 gcg:0.005 gct:0.024 gga:0.000 ggc:0.066 ggg:0.000 ggt:0.013 gta:0.000 gtc:0.043 gtg:0.020 gtt:0.013 taa:0.000 tac:0.033 tag:0.000 tat:0.001 tca:0.000 tcc:0.041 tcg:0.002 tct:0.001 tga:0.000 tgc:0.005 tgg:0.015 tgt:0.000 tta:0.000 ttc:0.035 ttg:0.000 ttt:0.000 CodonUsageIt8 sphere 2.6698704E-4 0.042984914 0.06407689 9.3445467E-4 6.6746766E-4 0.059271127 0.0013349353 0.002803364 0.0 0.0038713121 2.6698704E-4 2.6698704E-4 0.0 0.04965959 0.01708717 0.0053397412 1.3349352E-4 0.021892939 0.028834602 6.6746766E-4 4.0048058E-4 0.004004806 0.03404085 0.00226939 1.3349352E-4 0.023895342 0.0 0.016019223 1.3349352E-4 0.027366173 0.04618876 0.003337338 0.01815512 0.06407689 0.05913763 0.010545989 0.0034708316 0.06794821 0.0053397412 0.024295822 4.0048058E-4 0.06554532 1.3349352E-4 0.012948872 1.3349352E-4 0.04311841 0.020157522 0.012948872 0.0 0.033373382 0.0 9.3445467E-4 1.3349352E-4 0.04084902 0.002002403 0.0013349353 0.0 0.0046722735 0.014951275 0.0 1.3349352E-4 0.03484181 1.3349352E-4 1.3349352E-4 0.2 0 255 0 Iteration 9 First 17 genes (1%) aaa:0.000 aac:0.043 aag:0.065 aat:0.001 aca:0.001 acc:0.059 acg:0.001 act:0.003 aga:0.000 agc:0.004 agg:0.000 agt:0.000 ata:0.000 atc:0.049 atg:0.018 att:0.005 caa:0.000 cac:0.022 cag:0.028 cat:0.000 cca:0.000 ccc:0.004 ccg:0.034 cct:0.002 cga:0.000 cgc:0.024 cgg:0.000 cgt:0.015 cta:0.000 ctc:0.025 ctg:0.046 ctt:0.004 gaa:0.018 gac:0.064 gag:0.061 gat:0.011 gca:0.003 gcc:0.065 gcg:0.005 gct:0.028 gga:0.000 ggc:0.067 ggg:0.000 ggt:0.013 gta:0.000 gtc:0.044 gtg:0.018 gtt:0.014 taa:0.000 tac:0.034 tag:0.000 tat:0.001 tca:0.000 tcc:0.041 tcg:0.002 tct:0.001 tga:0.000 tgc:0.005 tgg:0.014 tgt:0.000 tta:0.000 ttc:0.035 ttg:0.000 ttt:0.000 CodonUsageIt9 sphere 1.459854E-4 0.042773724 0.064525545 8.7591243E-4 7.29927E-4 0.059270073 0.0011678832 0.0027737226 0.0 0.0037956205 2.919708E-4 2.919708E-4 0.0 0.04948905 0.017518248 0.0048175184 1.459854E-4 0.022043796 0.028321167 4.3795622E-4 4.3795622E-4 0.0035036497 0.034452554 0.0020437955 1.459854E-4 0.02350365 0.0 0.015474453 1.459854E-4 0.02540146 0.045839418 0.0035036497 0.01781022 0.06379562 0.06058394 0.011094891 0.003211679 0.06525548 0.0049635037 0.028467154 4.3795622E-4 0.067007296 0.0 0.013430657 1.459854E-4 0.044233575 0.018394161 0.014160584 0.0 0.03357664 0.0 5.839416E-4 1.459854E-4 0.041167885 0.0020437955 0.001459854 0.0 0.0046715327 0.0143065695 0.0 1.459854E-4 0.034744527 1.459854E-4 1.459854E-4 0.2 0 255 0 Iteration 10 First 17 genes (1%) aaa:0.000 aac:0.045 aag:0.066 aat:0.001 aca:0.001 acc:0.060 acg:0.001 act:0.003 aga:0.000 agc:0.004 agg:0.000 agt:0.000 ata:0.000 atc:0.047 atg:0.016 att:0.005 caa:0.000 cac:0.020 cag:0.029 cat:0.000 cca:0.000 ccc:0.003 ccg:0.035 cct:0.002 cga:0.000 cgc:0.021 cgg:0.000 cgt:0.015 cta:0.000 ctc:0.025 ctg:0.046 ctt:0.004 gaa:0.019 gac:0.063 gag:0.058 gat:0.012 gca:0.003 gcc:0.067 gcg:0.004 gct:0.032 gga:0.000 ggc:0.066 ggg:0.000 ggt:0.014 gta:0.000 gtc:0.043 gtg:0.019 gtt:0.014 taa:0.000 tac:0.032 tag:0.000 tat:0.001 tca:0.000 tcc:0.045 tcg:0.002 tct:0.002 tga:0.000 tgc:0.005 tgg:0.014 tgt:0.000 tta:0.000 ttc:0.036 ttg:0.000 ttt:0.000 CodonUsageIt10 sphere 3.034441E-4 0.045061447 0.06584737 7.586102E-4 6.068882E-4 0.059626766 9.1033225E-4 0.003489607 0.0 0.004248217 0.0 3.034441E-4 0.0 0.047033835 0.015779093 0.0048551057 0.0 0.020482477 0.029282354 1.5172205E-4 4.5516613E-4 0.0030344408 0.035047792 0.0021241086 0.0 0.020634199 0.0 0.015475648 0.0 0.025489304 0.045668334 0.0040964955 0.01851009 0.062812924 0.05795782 0.01183432 0.0028827188 0.06706114 0.004248217 0.031709906 3.034441E-4 0.06584737 0.0 0.0142618725 1.5172205E-4 0.042633895 0.018661812 0.01411015 0.0 0.032013353 0.0 7.586102E-4 1.5172205E-4 0.044758003 0.0015172204 0.0015172204 0.0 0.004551661 0.01411015 0.0 0.0 0.03641329 3.034441E-4 1.5172205E-4 0.2 0 255 0 Iteration 11 First 17 genes (1%) aaa:0.000 aac:0.045 aag:0.066 aat:0.001 aca:0.001 acc:0.060 acg:0.001 act:0.003 aga:0.000 agc:0.004 agg:0.000 agt:0.000 ata:0.000 atc:0.047 atg:0.016 att:0.005 caa:0.000 cac:0.020 cag:0.029 cat:0.000 cca:0.000 ccc:0.003 ccg:0.035 cct:0.002 cga:0.000 cgc:0.021 cgg:0.000 cgt:0.015 cta:0.000 ctc:0.025 ctg:0.046 ctt:0.004 gaa:0.019 gac:0.063 gag:0.058 gat:0.012 gca:0.003 gcc:0.067 gcg:0.004 gct:0.032 gga:0.000 ggc:0.066 ggg:0.000 ggt:0.014 gta:0.000 gtc:0.043 gtg:0.019 gtt:0.014 taa:0.000 tac:0.032 tag:0.000 tat:0.001 tca:0.000 tcc:0.045 tcg:0.002 tct:0.002 tga:0.000 tgc:0.005 tgg:0.014 tgt:0.000 tta:0.000 ttc:0.036 ttg:0.000 ttt:0.000 CodonUsageIt11 sphere 3.034441E-4 0.045061447 0.06584737 7.586102E-4 6.068882E-4 0.059626766 9.1033225E-4 0.003489607 0.0 0.004248217 0.0 3.034441E-4 0.0 0.047033835 0.015779093 0.0048551057 0.0 0.020482477 0.029282354 1.5172205E-4 4.5516613E-4 0.0030344408 0.035047792 0.0021241086 0.0 0.020634199 0.0 0.015475648 0.0 0.025489304 0.045668334 0.0040964955 0.01851009 0.062812924 0.05795782 0.01183432 0.0028827188 0.06706114 0.004248217 0.031709906 3.034441E-4 0.06584737 0.0 0.0142618725 1.5172205E-4 0.042633895 0.018661812 0.01411015 0.0 0.032013353 0.0 7.586102E-4 1.5172205E-4 0.044758003 0.0015172204 0.0015172204 0.0 0.004551661 0.01411015 0.0 0.0 0.03641329 3.034441E-4 1.5172205E-4 0.2 0 255 0 Iteration 12 First 17 genes (1%) aaa:0.000 aac:0.045 aag:0.066 aat:0.001 aca:0.001 acc:0.060 acg:0.001 act:0.003 aga:0.000 agc:0.004 agg:0.000 agt:0.000 ata:0.000 atc:0.047 atg:0.016 att:0.005 caa:0.000 cac:0.020 cag:0.029 cat:0.000 cca:0.000 ccc:0.003 ccg:0.035 cct:0.002 cga:0.000 cgc:0.021 cgg:0.000 cgt:0.015 cta:0.000 ctc:0.025 ctg:0.046 ctt:0.004 gaa:0.019 gac:0.063 gag:0.058 gat:0.012 gca:0.003 gcc:0.067 gcg:0.004 gct:0.032 gga:0.000 ggc:0.066 ggg:0.000 ggt:0.014 gta:0.000 gtc:0.043 gtg:0.019 gtt:0.014 taa:0.000 tac:0.032 tag:0.000 tat:0.001 tca:0.000 tcc:0.045 tcg:0.002 tct:0.002 tga:0.000 tgc:0.005 tgg:0.014 tgt:0.000 tta:0.000 ttc:0.036 ttg:0.000 ttt:0.000 CodonUsageIt12 sphere 3.034441E-4 0.045061447 0.06584737 7.586102E-4 6.068882E-4 0.059626766 9.1033225E-4 0.003489607 0.0 0.004248217 0.0 3.034441E-4 0.0 0.047033835 0.015779093 0.0048551057 0.0 0.020482477 0.029282354 1.5172205E-4 4.5516613E-4 0.0030344408 0.035047792 0.0021241086 0.0 0.020634199 0.0 0.015475648 0.0 0.025489304 0.045668334 0.0040964955 0.01851009 0.062812924 0.05795782 0.01183432 0.0028827188 0.06706114 0.004248217 0.031709906 3.034441E-4 0.06584737 0.0 0.0142618725 1.5172205E-4 0.042633895 0.018661812 0.01411015 0.0 0.032013353 0.0 7.586102E-4 1.5172205E-4 0.044758003 0.0015172204 0.0015172204 0.0 0.004551661 0.01411015 0.0 0.0 0.03641329 3.034441E-4 1.5172205E-4 0.2 0 255 0 Iteration 13 First 17 genes (1%) aaa:0.000 aac:0.045 aag:0.066 aat:0.001 aca:0.001 acc:0.060 acg:0.001 act:0.003 aga:0.000 agc:0.004 agg:0.000 agt:0.000 ata:0.000 atc:0.047 atg:0.016 att:0.005 caa:0.000 cac:0.020 cag:0.029 cat:0.000 cca:0.000 ccc:0.003 ccg:0.035 cct:0.002 cga:0.000 cgc:0.021 cgg:0.000 cgt:0.015 cta:0.000 ctc:0.025 ctg:0.046 ctt:0.004 gaa:0.019 gac:0.063 gag:0.058 gat:0.012 gca:0.003 gcc:0.067 gcg:0.004 gct:0.032 gga:0.000 ggc:0.066 ggg:0.000 ggt:0.014 gta:0.000 gtc:0.043 gtg:0.019 gtt:0.014 taa:0.000 tac:0.032 tag:0.000 tat:0.001 tca:0.000 tcc:0.045 tcg:0.002 tct:0.002 tga:0.000 tgc:0.005 tgg:0.014 tgt:0.000 tta:0.000 ttc:0.036 ttg:0.000 ttt:0.000 CodonUsageIt13 sphere 3.034441E-4 0.045061447 0.06584737 7.586102E-4 6.068882E-4 0.059626766 9.1033225E-4 0.003489607 0.0 0.004248217 0.0 3.034441E-4 0.0 0.047033835 0.015779093 0.0048551057 0.0 0.020482477 0.029282354 1.5172205E-4 4.5516613E-4 0.0030344408 0.035047792 0.0021241086 0.0 0.020634199 0.0 0.015475648 0.0 0.025489304 0.045668334 0.0040964955 0.01851009 0.062812924 0.05795782 0.01183432 0.0028827188 0.06706114 0.004248217 0.031709906 3.034441E-4 0.06584737 0.0 0.0142618725 1.5172205E-4 0.042633895 0.018661812 0.01411015 0.0 0.032013353 0.0 7.586102E-4 1.5172205E-4 0.044758003 0.0015172204 0.0015172204 0.0 0.004551661 0.01411015 0.0 0.0 0.03641329 3.034441E-4 1.5172205E-4 0.2 0 255 0 Iteration 14 First 17 genes (1%) aaa:0.000 aac:0.045 aag:0.066 aat:0.001 aca:0.001 acc:0.060 acg:0.001 act:0.003 aga:0.000 agc:0.004 agg:0.000 agt:0.000 ata:0.000 atc:0.047 atg:0.016 att:0.005 caa:0.000 cac:0.020 cag:0.029 cat:0.000 cca:0.000 ccc:0.003 ccg:0.035 cct:0.002 cga:0.000 cgc:0.021 cgg:0.000 cgt:0.015 cta:0.000 ctc:0.025 ctg:0.046 ctt:0.004 gaa:0.019 gac:0.063 gag:0.058 gat:0.012 gca:0.003 gcc:0.067 gcg:0.004 gct:0.032 gga:0.000 ggc:0.066 ggg:0.000 ggt:0.014 gta:0.000 gtc:0.043 gtg:0.019 gtt:0.014 taa:0.000 tac:0.032 tag:0.000 tat:0.001 tca:0.000 tcc:0.045 tcg:0.002 tct:0.002 tga:0.000 tgc:0.005 tgg:0.014 tgt:0.000 tta:0.000 ttc:0.036 ttg:0.000 ttt:0.000 CodonUsageIt14 sphere 3.034441E-4 0.045061447 0.06584737 7.586102E-4 6.068882E-4 0.059626766 9.1033225E-4 0.003489607 0.0 0.004248217 0.0 3.034441E-4 0.0 0.047033835 0.015779093 0.0048551057 0.0 0.020482477 0.029282354 1.5172205E-4 4.5516613E-4 0.0030344408 0.035047792 0.0021241086 0.0 0.020634199 0.0 0.015475648 0.0 0.025489304 0.045668334 0.0040964955 0.01851009 0.062812924 0.05795782 0.01183432 0.0028827188 0.06706114 0.004248217 0.031709906 3.034441E-4 0.06584737 0.0 0.0142618725 1.5172205E-4 0.042633895 0.018661812 0.01411015 0.0 0.032013353 0.0 7.586102E-4 1.5172205E-4 0.044758003 0.0015172204 0.0015172204 0.0 0.004551661 0.01411015 0.0 0.0 0.03641329 3.034441E-4 1.5172205E-4 0.2 0 255 0 aaa:0.005 aac:1.000 aag:1.000 aat:0.017 aca:0.010 acc:1.000 acg:0.015 act:0.059 aga:0.000 agc:0.095 agg:0.000 agt:0.007 ata:0.000 atc:1.000 atg:1.000 att:0.103 caa:0.000 cac:1.000 cag:1.000 cat:0.007 cca:0.013 ccc:0.087 ccg:1.000 cct:0.061 cga:0.000 cgc:1.000 cgg:0.000 cgt:0.750 cta:0.000 ctc:0.558 ctg:1.000 ctt:0.090 gaa:0.319 gac:1.000 gag:1.000 gat:0.188 gca:0.043 gcc:1.000 gcg:0.063 gct:0.473 gga:0.005 ggc:1.000 ggg:0.000 ggt:0.217 gta:0.004 gtc:1.000 gtg:0.438 gtt:0.331 taa:0.000 tac:1.000 tag:0.000 tat:0.024 tca:0.003 tcc:1.000 tcg:0.034 tct:0.034 tga:0.000 tgc:1.000 tgg:1.000 tgt:0.000 tta:0.000 ttc:1.000 ttg:0.007 ttt:0.004 ttt:0.004 ttc:1.000 ttg:0.007 tta:0.000 tct:0.034 tcc:1.000 tcg:0.034 tca:0.003 tgt:0.000 tgc:1.000 tgg:1.000 tga:0.000 tat:0.024 tac:1.000 tag:0.000 taa:0.000 ctt:0.090 ctc:0.558 ctg:1.000 cta:0.000 cct:0.061 ccc:0.087 ccg:1.000 cca:0.013 cgt:0.750 cgc:1.000 cgg:0.000 cga:0.000 cat:0.007 cac:1.000 cag:1.000 caa:0.000 gtt:0.331 gtc:1.000 gtg:0.438 gta:0.004 gct:0.473 gcc:1.000 gcg:0.063 gca:0.043 ggt:0.217 ggc:1.000 ggg:0.000 gga:0.005 gat:0.188 gac:1.000 gag:1.000 gaa:0.319 att:0.103 atc:1.000 atg:1.000 ata:0.000 act:0.059 acc:1.000 acg:0.015 aca:0.010 agt:0.007 agc:0.095 agg:0.000 aga:0.000 aat:0.017 aac:1.000 aag:1.000 aaa:0.005 // 0 - CAICLASS // 1 - STRAND // 2 - GC_CONT // 3 - GC_CONT3 // 4 - GC_SKEW // 5 - AT_SKEW // 6 - GENELENGTH // 7 - CAIEXT --- -0.08199436 0.54494673 0.7976604 -0.4352367 0.26635924 0.18185969 NaN