AdditionalInfoFile = "" ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 Looking for randomclass.txt... Loading sequence... Loaded... Getting seq... Got NC_003317 2059 CDS features found Getting seq... Got NC_003318 1139 CDS features found CodonUsage sphere 0.01281474 0.014558033 0.028580317 0.016555492 0.0066736625 0.021844432 0.01949473 0.0034212011 0.0017675502 0.013622582 0.0037512984 0.00300357 0.0039179293 0.03689603 0.023720609 0.018243944 0.007024852 0.007392916 0.024915498 0.013787103 0.0048997845 0.011732695 0.026320258 0.0060419426 0.0025891026 0.037421234 0.009953544 0.01176117 0.0016367768 0.021012334 0.039797302 0.024298543 0.03739065 0.02426374 0.020958548 0.030712768 0.019810062 0.044090677 0.037050005 0.014014902 0.0068982975 0.05128216 0.011050353 0.014496865 0.0039685513 0.023836618 0.028308224 0.015890025 0.0 0.0058373455 0.0 0.018165903 0.004353489 0.014941917 0.016520688 0.0035962688 0.0 0.0070343437 0.012449839 0.001959492 0.0013667931 0.026231669 0.010277313 0.013791322 0.4 255 0 0 aaa:0.013 aac:0.015 aag:0.029 aat:0.017 aca:0.007 acc:0.022 acg:0.019 act:0.003 aga:0.002 agc:0.014 agg:0.004 agt:0.003 ata:0.004 atc:0.037 atg:0.024 att:0.018 caa:0.007 cac:0.007 cag:0.025 cat:0.014 cca:0.005 ccc:0.012 ccg:0.026 cct:0.006 cga:0.003 cgc:0.037 cgg:0.010 cgt:0.012 cta:0.002 ctc:0.021 ctg:0.040 ctt:0.024 gaa:0.037 gac:0.024 gag:0.021 gat:0.031 gca:0.020 gcc:0.044 gcg:0.037 gct:0.014 gga:0.007 ggc:0.051 ggg:0.011 ggt:0.014 gta:0.004 gtc:0.024 gtg:0.028 gtt:0.016 taa:0.000 tac:0.006 tag:0.000 tat:0.018 tca:0.004 tcc:0.015 tcg:0.017 tct:0.004 tga:0.000 tgc:0.007 tgg:0.012 tgt:0.002 tta:0.001 ttc:0.026 ttg:0.010 ttt:0.014 Number of points = 3198 Iteration 0 First 1599 genes (50%) aaa:0.011 aac:0.016 aag:0.034 aat:0.017 aca:0.005 acc:0.024 acg:0.020 act:0.003 aga:0.001 agc:0.012 agg:0.002 agt:0.002 ata:0.002 atc:0.040 atg:0.025 att:0.017 caa:0.005 cac:0.007 cag:0.027 cat:0.013 cca:0.004 ccc:0.011 ccg:0.028 cct:0.005 cga:0.001 cgc:0.040 cgg:0.007 cgt:0.011 cta:0.001 ctc:0.022 ctg:0.041 ctt:0.023 gaa:0.041 gac:0.027 gag:0.021 gat:0.031 gca:0.018 gcc:0.046 gcg:0.037 gct:0.013 gga:0.005 ggc:0.057 ggg:0.009 ggt:0.014 gta:0.003 gtc:0.026 gtg:0.031 gtt:0.015 taa:0.000 tac:0.006 tag:0.000 tat:0.019 tca:0.003 tcc:0.016 tcg:0.017 tct:0.003 tga:0.000 tgc:0.007 tgg:0.012 tgt:0.001 tta:0.000 ttc:0.028 ttg:0.008 ttt:0.011 CodonUsageIt0 sphere 0.011070993 0.015641801 0.033597775 0.016522877 0.004996961 0.024335686 0.020282736 0.002722346 8.3971967E-4 0.01236204 0.0024616192 0.0019509547 0.0021415548 0.040428814 0.024853544 0.017076697 0.0052037444 0.0071978536 0.026675034 0.013262895 0.003664558 0.010948721 0.02814769 0.0048351306 0.0011076387 0.040400043 0.0069910707 0.011457588 8.5230643E-4 0.022073658 0.041230775 0.023170508 0.040765062 0.026532983 0.020741254 0.030783726 0.017873261 0.046407547 0.037096906 0.012644344 0.0046697045 0.056593865 0.008587796 0.013755579 0.0029381197 0.025765188 0.030535586 0.015267793 0.0 0.005840277 0.0 0.01884784 0.0030316217 0.015762275 0.017477676 0.0025587175 0.0 0.0065828986 0.011730901 0.0012101313 4.3334567E-4 0.028451571 0.0075089275 0.011099763 0.2 0 255 0 Iteration 1 First 799 genes (25%) aaa:0.010 aac:0.017 aag:0.039 aat:0.017 aca:0.004 acc:0.026 acg:0.020 act:0.002 aga:0.001 agc:0.011 agg:0.002 agt:0.001 ata:0.001 atc:0.042 atg:0.025 att:0.016 caa:0.004 cac:0.007 cag:0.028 cat:0.013 cca:0.003 ccc:0.010 ccg:0.029 cct:0.004 cga:0.001 cgc:0.041 cgg:0.005 cgt:0.012 cta:0.001 ctc:0.022 ctg:0.039 ctt:0.021 gaa:0.044 gac:0.029 gag:0.021 gat:0.031 gca:0.017 gcc:0.047 gcg:0.035 gct:0.013 gga:0.003 ggc:0.060 ggg:0.006 ggt:0.014 gta:0.002 gtc:0.027 gtg:0.030 gtt:0.016 taa:0.000 tac:0.006 tag:0.000 tat:0.019 tca:0.002 tcc:0.016 tcg:0.018 tct:0.002 tga:0.000 tgc:0.007 tgg:0.011 tgt:0.001 tta:0.000 ttc:0.030 ttg:0.006 ttt:0.009 CodonUsageIt1 sphere 0.010228841 0.017191928 0.03942691 0.016607422 0.0040813414 0.026115827 0.02026058 0.0024875454 5.199377E-4 0.011336681 0.0017603121 0.0014544664 0.0013729075 0.042295065 0.025320629 0.016213221 0.0040099774 0.007381077 0.027937308 0.012597445 0.0029395174 0.009960376 0.029140301 0.0044653476 6.3547946E-4 0.040949345 0.0045503047 0.011639129 6.456743E-4 0.022415094 0.039460897 0.02139221 0.044065572 0.028712118 0.020688765 0.030785073 0.01671277 0.04716821 0.034839228 0.012957664 0.003388091 0.06009189 0.0064465483 0.013953362 0.0024433676 0.027244058 0.02989812 0.015547158 0.0 0.0063887774 0.0 0.01913235 0.0023584105 0.016250603 0.018269185 0.002222479 0.0 0.0066130646 0.011391054 9.3792693E-4 1.9710058E-4 0.02950052 0.0059843813 0.009019051 0.2 0 255 0 Iteration 2 First 383 genes (12%) aaa:0.009 aac:0.019 aag:0.044 aat:0.016 aca:0.003 acc:0.027 acg:0.020 act:0.002 aga:0.000 agc:0.010 agg:0.001 agt:0.001 ata:0.001 atc:0.045 atg:0.026 att:0.015 caa:0.003 cac:0.008 cag:0.029 cat:0.012 cca:0.003 ccc:0.009 ccg:0.030 cct:0.004 cga:0.000 cgc:0.041 cgg:0.003 cgt:0.013 cta:0.000 ctc:0.023 ctg:0.038 ctt:0.019 gaa:0.047 gac:0.031 gag:0.020 gat:0.031 gca:0.016 gcc:0.047 gcg:0.032 gct:0.014 gga:0.002 ggc:0.062 ggg:0.005 ggt:0.014 gta:0.002 gtc:0.029 gtg:0.029 gtt:0.017 taa:0.000 tac:0.007 tag:0.000 tat:0.019 tca:0.002 tcc:0.016 tcg:0.019 tct:0.002 tga:0.000 tgc:0.007 tgg:0.011 tgt:0.001 tta:0.000 ttc:0.030 ttg:0.005 ttt:0.007 CodonUsageIt2 sphere 0.009269246 0.018808143 0.044344075 0.016118377 0.003222327 0.027308885 0.019751921 0.0023122556 3.168397E-4 0.009727653 0.0011662397 0.0010111905 8.156937E-4 0.044559795 0.026398813 0.015255494 0.0032088445 0.007920993 0.029290818 0.011810705 0.0025482 0.008783875 0.030187408 0.0043548606 4.1121748E-4 0.041425105 0.0028313333 0.012545504 4.4492382E-4 0.02261022 0.038249966 0.019360928 0.047418095 0.030814346 0.02033167 0.030585142 0.015612781 0.046743967 0.031987328 0.014028583 0.0021841715 0.062397197 0.004597546 0.014480248 0.0021369825 0.02860995 0.028549278 0.016637454 0.0 0.0074019143 0.0 0.019071054 0.0018134017 0.015808279 0.01926655 0.0020291223 0.0 0.006956991 0.011069166 7.685048E-4 1.2134286E-4 0.029877309 0.004907645 0.0074221385 0.2 0 255 0 Iteration 3 First 191 genes (6%) aaa:0.008 aac:0.021 aag:0.052 aat:0.015 aca:0.002 acc:0.028 acg:0.019 act:0.002 aga:0.000 agc:0.008 agg:0.001 agt:0.001 ata:0.000 atc:0.047 atg:0.027 att:0.015 caa:0.002 cac:0.008 cag:0.030 cat:0.011 cca:0.002 ccc:0.007 ccg:0.031 cct:0.004 cga:0.000 cgc:0.040 cgg:0.002 cgt:0.014 cta:0.000 ctc:0.024 ctg:0.036 ctt:0.018 gaa:0.052 gac:0.034 gag:0.020 gat:0.029 gca:0.015 gcc:0.046 gcg:0.027 gct:0.016 gga:0.002 ggc:0.065 ggg:0.003 ggt:0.016 gta:0.002 gtc:0.031 gtg:0.026 gtt:0.019 taa:0.000 tac:0.009 tag:0.000 tat:0.018 tca:0.001 tcc:0.015 tcg:0.021 tct:0.002 tga:0.000 tgc:0.008 tgg:0.010 tgt:0.001 tta:0.000 ttc:0.030 ttg:0.004 ttt:0.006 CodonUsageIt3 sphere 0.007901386 0.020666286 0.05237407 0.01463436 0.002234588 0.028260965 0.019410243 0.0020009056 2.1907725E-4 0.008222699 8.3249353E-4 6.86442E-4 3.505236E-4 0.0467949 0.026698213 0.0147658065 0.00195709 0.008441777 0.02966306 0.0105887335 0.002132352 0.0067913947 0.030919103 0.004104047 1.8986694E-4 0.03950693 0.0015481459 0.013962523 3.505236E-4 0.023543501 0.036366824 0.017599205 0.0524617 0.033796318 0.019863004 0.029064247 0.0147365965 0.046458982 0.026902687 0.016489213 0.0015773561 0.064905286 0.0029648454 0.015612905 0.0017672231 0.030816866 0.026333084 0.019293403 0.0 0.008719275 0.0 0.01755539 0.0013582789 0.015393828 0.020753918 0.0020885365 0.0 0.007507047 0.009858476 5.6960084E-4 5.84206E-5 0.029998977 0.003724313 0.005652193 0.2 0 255 0 Iteration 4 First 95 genes (3%) aaa:0.006 aac:0.022 aag:0.057 aat:0.012 aca:0.001 acc:0.030 acg:0.018 act:0.002 aga:0.000 agc:0.007 agg:0.000 agt:0.000 ata:0.000 atc:0.049 atg:0.027 att:0.014 caa:0.001 cac:0.009 cag:0.030 cat:0.010 cca:0.002 ccc:0.005 ccg:0.032 cct:0.004 cga:0.000 cgc:0.039 cgg:0.001 cgt:0.015 cta:0.000 ctc:0.024 ctg:0.036 ctt:0.016 gaa:0.058 gac:0.036 gag:0.018 gat:0.026 gca:0.014 gcc:0.047 gcg:0.024 gct:0.019 gga:0.001 ggc:0.065 ggg:0.002 ggt:0.017 gta:0.001 gtc:0.033 gtg:0.023 gtt:0.022 taa:0.000 tac:0.010 tag:0.000 tat:0.016 tca:0.001 tcc:0.014 tcg:0.023 tct:0.002 tga:0.000 tgc:0.007 tgg:0.009 tgt:0.000 tta:0.000 ttc:0.030 ttg:0.003 ttt:0.005 CodonUsageIt4 sphere 0.006296712 0.022257509 0.057272702 0.012210146 0.0014509815 0.029840939 0.017822433 0.0022175377 2.1901607E-4 0.0066799903 4.1065514E-4 3.8327812E-4 2.737701E-4 0.04897747 0.026555698 0.013880144 0.0013140964 0.008541627 0.030142087 0.009527199 0.0016973745 0.0054206476 0.031976346 0.0044898293 8.2131024E-5 0.039149124 9.308183E-4 0.014920469 3.285241E-4 0.024338162 0.035809126 0.016152436 0.058313027 0.036192406 0.018096203 0.02644619 0.01437293 0.047197964 0.024338162 0.018780628 0.0012593424 0.06493826 0.0017795055 0.0173844 0.0012319654 0.032907166 0.023462096 0.022284886 0.0 0.009636707 0.0 0.015659649 0.0011772114 0.013688505 0.022750294 0.0020806526 0.0 0.00695376 0.008979659 4.6540916E-4 0.0 0.029704055 0.003230487 0.0051195007 0.2 0 255 0 Iteration 5 First 31 genes (1%) aaa:0.004 aac:0.026 aag:0.065 aat:0.012 aca:0.001 acc:0.034 acg:0.016 act:0.002 aga:0.000 agc:0.007 agg:0.000 agt:0.000 ata:0.000 atc:0.050 atg:0.023 att:0.011 caa:0.001 cac:0.008 cag:0.032 cat:0.007 cca:0.001 ccc:0.005 ccg:0.030 cct:0.004 cga:0.000 cgc:0.037 cgg:0.001 cgt:0.013 cta:0.000 ctc:0.027 ctg:0.033 ctt:0.013 gaa:0.066 gac:0.038 gag:0.014 gat:0.024 gca:0.014 gcc:0.051 gcg:0.017 gct:0.024 gga:0.002 ggc:0.068 ggg:0.001 ggt:0.018 gta:0.001 gtc:0.039 gtg:0.020 gtt:0.029 taa:0.000 tac:0.011 tag:0.000 tat:0.013 tca:0.000 tcc:0.013 tcg:0.022 tct:0.002 tga:0.000 tgc:0.006 tgg:0.009 tgt:0.001 tta:0.000 ttc:0.026 ttg:0.001 ttt:0.004 CodonUsageIt5 sphere 0.004463359 0.025638364 0.065393396 0.011625493 7.265933E-4 0.03383849 0.01629645 0.002491177 1.03799044E-4 0.006643139 2.0759809E-4 4.1519618E-4 0.0 0.050238736 0.023043389 0.011210297 9.341914E-4 0.007888728 0.032073904 0.007473531 9.341914E-4 0.0047747563 0.030309321 0.0040481626 0.0 0.037160058 6.2279426E-4 0.013182479 3.1139713E-4 0.027299149 0.033008095 0.013493876 0.06632759 0.037575256 0.013597675 0.023666183 0.013909072 0.05117293 0.016504047 0.024496574 0.0016607847 0.06840357 8.3039235E-4 0.017957235 7.265933E-4 0.03913224 0.020033216 0.029063733 0.0 0.010898899 0.0 0.013493876 1.03799044E-4 0.013390076 0.022109197 0.0023873781 0.0 0.0061241435 0.008822919 5.189952E-4 0.0 0.02605356 0.0012455885 0.003944364 0.2 0 255 0 Iteration 6 First 31 genes (1%) aaa:0.004 aac:0.025 aag:0.066 aat:0.011 aca:0.001 acc:0.034 acg:0.016 act:0.003 aga:0.000 agc:0.006 agg:0.000 agt:0.000 ata:0.000 atc:0.051 atg:0.023 att:0.011 caa:0.001 cac:0.008 cag:0.031 cat:0.007 cca:0.001 ccc:0.005 ccg:0.030 cct:0.004 cga:0.000 cgc:0.036 cgg:0.001 cgt:0.014 cta:0.000 ctc:0.027 ctg:0.033 ctt:0.014 gaa:0.066 gac:0.038 gag:0.013 gat:0.023 gca:0.015 gcc:0.051 gcg:0.017 gct:0.026 gga:0.002 ggc:0.069 ggg:0.001 ggt:0.019 gta:0.001 gtc:0.039 gtg:0.019 gtt:0.030 taa:0.000 tac:0.011 tag:0.000 tat:0.013 tca:0.000 tcc:0.014 tcg:0.022 tct:0.003 tga:0.000 tgc:0.006 tgg:0.008 tgt:0.000 tta:0.000 ttc:0.026 ttg:0.001 ttt:0.004 CodonUsageIt6 sphere 0.004067057 0.025096716 0.06646166 0.010614026 5.9517904E-4 0.033627618 0.015871441 0.0028766987 9.9196506E-5 0.006050987 9.9196506E-5 3.9678602E-4 0.0 0.05059022 0.023112787 0.011209206 9.919651E-4 0.008332507 0.031147704 0.007042952 9.919651E-4 0.005059022 0.030453328 0.004067057 0.0 0.03640512 5.9517904E-4 0.013589921 2.9758952E-4 0.027179843 0.03263565 0.013589921 0.066263266 0.037893064 0.012994743 0.02301359 0.015474656 0.051482987 0.016962603 0.025890289 0.0015871441 0.06874318 6.9437554E-4 0.018946532 7.9357205E-4 0.039182622 0.018946532 0.029957345 0.0 0.011209206 0.0 0.012597957 9.9196506E-5 0.013589921 0.022418411 0.0025791093 0.0 0.005852594 0.0079357205 4.9598253E-4 0.0 0.026287075 0.0012895546 0.0036702708 0.2 0 255 0 Iteration 7 First 31 genes (1%) aaa:0.004 aac:0.024 aag:0.066 aat:0.010 aca:0.001 acc:0.034 acg:0.016 act:0.003 aga:0.000 agc:0.006 agg:0.000 agt:0.000 ata:0.000 atc:0.052 atg:0.024 att:0.011 caa:0.001 cac:0.009 cag:0.031 cat:0.007 cca:0.001 ccc:0.005 ccg:0.030 cct:0.004 cga:0.000 cgc:0.036 cgg:0.001 cgt:0.015 cta:0.000 ctc:0.027 ctg:0.032 ctt:0.014 gaa:0.067 gac:0.038 gag:0.013 gat:0.023 gca:0.016 gcc:0.050 gcg:0.017 gct:0.026 gga:0.001 ggc:0.068 ggg:0.001 ggt:0.020 gta:0.001 gtc:0.039 gtg:0.019 gtt:0.030 taa:0.000 tac:0.011 tag:0.000 tat:0.012 tca:0.000 tcc:0.013 tcg:0.023 tct:0.003 tga:0.000 tgc:0.006 tgg:0.007 tgt:0.000 tta:0.000 ttc:0.026 ttg:0.002 ttt:0.004 CodonUsageIt7 sphere 0.003986711 0.024299953 0.06559089 0.010156621 5.695301E-4 0.03417181 0.016136687 0.0026578072 9.492169E-5 0.0056953016 9.492169E-5 3.7968677E-4 0.0 0.05173232 0.024110109 0.011295681 9.492169E-4 0.008637873 0.031039393 0.0071191266 9.492169E-4 0.0049359277 0.030280018 0.004366398 0.0 0.036355007 5.695301E-4 0.01461794 1.8984338E-4 0.026862837 0.031608924 0.01404841 0.06663503 0.03834836 0.0133839585 0.023065971 0.015567157 0.05002373 0.016706217 0.026483152 0.0014238254 0.06777409 6.644518E-4 0.019933555 7.5937354E-4 0.0393925 0.018984338 0.030090176 0.0 0.011105837 0.0 0.012339819 9.492169E-5 0.013289036 0.022591362 0.0028476508 0.0 0.00560038 0.0071191266 4.7460845E-4 0.0 0.026293308 0.0015187471 0.003986711 0.2 0 255 0 Iteration 8 First 31 genes (1%) aaa:0.004 aac:0.024 aag:0.066 aat:0.010 aca:0.001 acc:0.034 acg:0.016 act:0.003 aga:0.000 agc:0.006 agg:0.000 agt:0.000 ata:0.000 atc:0.052 atg:0.024 att:0.011 caa:0.001 cac:0.009 cag:0.031 cat:0.007 cca:0.001 ccc:0.005 ccg:0.030 cct:0.004 cga:0.000 cgc:0.036 cgg:0.001 cgt:0.015 cta:0.000 ctc:0.027 ctg:0.032 ctt:0.014 gaa:0.067 gac:0.038 gag:0.013 gat:0.023 gca:0.016 gcc:0.050 gcg:0.017 gct:0.026 gga:0.001 ggc:0.068 ggg:0.001 ggt:0.020 gta:0.001 gtc:0.039 gtg:0.019 gtt:0.030 taa:0.000 tac:0.011 tag:0.000 tat:0.012 tca:0.000 tcc:0.013 tcg:0.023 tct:0.003 tga:0.000 tgc:0.006 tgg:0.007 tgt:0.000 tta:0.000 ttc:0.026 ttg:0.002 ttt:0.004 CodonUsageIt8 sphere 0.003986711 0.024299953 0.06559089 0.010156621 5.695301E-4 0.03417181 0.016136687 0.0026578072 9.492169E-5 0.0056953016 9.492169E-5 3.7968677E-4 0.0 0.05173232 0.024110109 0.011295681 9.492169E-4 0.008637873 0.031039393 0.0071191266 9.492169E-4 0.0049359277 0.030280018 0.004366398 0.0 0.036355007 5.695301E-4 0.01461794 1.8984338E-4 0.026862837 0.031608924 0.01404841 0.06663503 0.03834836 0.0133839585 0.023065971 0.015567157 0.05002373 0.016706217 0.026483152 0.0014238254 0.06777409 6.644518E-4 0.019933555 7.5937354E-4 0.0393925 0.018984338 0.030090176 0.0 0.011105837 0.0 0.012339819 9.492169E-5 0.013289036 0.022591362 0.0028476508 0.0 0.00560038 0.0071191266 4.7460845E-4 0.0 0.026293308 0.0015187471 0.003986711 0.2 0 255 0 Iteration 9 First 31 genes (1%) aaa:0.004 aac:0.024 aag:0.066 aat:0.010 aca:0.001 acc:0.034 acg:0.016 act:0.003 aga:0.000 agc:0.006 agg:0.000 agt:0.000 ata:0.000 atc:0.052 atg:0.024 att:0.011 caa:0.001 cac:0.009 cag:0.031 cat:0.007 cca:0.001 ccc:0.005 ccg:0.030 cct:0.004 cga:0.000 cgc:0.036 cgg:0.001 cgt:0.015 cta:0.000 ctc:0.027 ctg:0.032 ctt:0.014 gaa:0.067 gac:0.038 gag:0.013 gat:0.023 gca:0.016 gcc:0.050 gcg:0.017 gct:0.026 gga:0.001 ggc:0.068 ggg:0.001 ggt:0.020 gta:0.001 gtc:0.039 gtg:0.019 gtt:0.030 taa:0.000 tac:0.011 tag:0.000 tat:0.012 tca:0.000 tcc:0.013 tcg:0.023 tct:0.003 tga:0.000 tgc:0.006 tgg:0.007 tgt:0.000 tta:0.000 ttc:0.026 ttg:0.002 ttt:0.004 CodonUsageIt9 sphere 0.003986711 0.024299953 0.06559089 0.010156621 5.695301E-4 0.03417181 0.016136687 0.0026578072 9.492169E-5 0.0056953016 9.492169E-5 3.7968677E-4 0.0 0.05173232 0.024110109 0.011295681 9.492169E-4 0.008637873 0.031039393 0.0071191266 9.492169E-4 0.0049359277 0.030280018 0.004366398 0.0 0.036355007 5.695301E-4 0.01461794 1.8984338E-4 0.026862837 0.031608924 0.01404841 0.06663503 0.03834836 0.0133839585 0.023065971 0.015567157 0.05002373 0.016706217 0.026483152 0.0014238254 0.06777409 6.644518E-4 0.019933555 7.5937354E-4 0.0393925 0.018984338 0.030090176 0.0 0.011105837 0.0 0.012339819 9.492169E-5 0.013289036 0.022591362 0.0028476508 0.0 0.00560038 0.0071191266 4.7460845E-4 0.0 0.026293308 0.0015187471 0.003986711 0.2 0 255 0 Iteration 10 First 31 genes (1%) aaa:0.004 aac:0.024 aag:0.066 aat:0.010 aca:0.001 acc:0.034 acg:0.016 act:0.003 aga:0.000 agc:0.006 agg:0.000 agt:0.000 ata:0.000 atc:0.052 atg:0.024 att:0.011 caa:0.001 cac:0.009 cag:0.031 cat:0.007 cca:0.001 ccc:0.005 ccg:0.030 cct:0.004 cga:0.000 cgc:0.036 cgg:0.001 cgt:0.015 cta:0.000 ctc:0.027 ctg:0.032 ctt:0.014 gaa:0.067 gac:0.038 gag:0.013 gat:0.023 gca:0.016 gcc:0.050 gcg:0.017 gct:0.026 gga:0.001 ggc:0.068 ggg:0.001 ggt:0.020 gta:0.001 gtc:0.039 gtg:0.019 gtt:0.030 taa:0.000 tac:0.011 tag:0.000 tat:0.012 tca:0.000 tcc:0.013 tcg:0.023 tct:0.003 tga:0.000 tgc:0.006 tgg:0.007 tgt:0.000 tta:0.000 ttc:0.026 ttg:0.002 ttt:0.004 CodonUsageIt10 sphere 0.003986711 0.024299953 0.06559089 0.010156621 5.695301E-4 0.03417181 0.016136687 0.0026578072 9.492169E-5 0.0056953016 9.492169E-5 3.7968677E-4 0.0 0.05173232 0.024110109 0.011295681 9.492169E-4 0.008637873 0.031039393 0.0071191266 9.492169E-4 0.0049359277 0.030280018 0.004366398 0.0 0.036355007 5.695301E-4 0.01461794 1.8984338E-4 0.026862837 0.031608924 0.01404841 0.06663503 0.03834836 0.0133839585 0.023065971 0.015567157 0.05002373 0.016706217 0.026483152 0.0014238254 0.06777409 6.644518E-4 0.019933555 7.5937354E-4 0.0393925 0.018984338 0.030090176 0.0 0.011105837 0.0 0.012339819 9.492169E-5 0.013289036 0.022591362 0.0028476508 0.0 0.00560038 0.0071191266 4.7460845E-4 0.0 0.026293308 0.0015187471 0.003986711 0.2 0 255 0 Iteration 11 First 31 genes (1%) aaa:0.004 aac:0.024 aag:0.066 aat:0.010 aca:0.001 acc:0.034 acg:0.016 act:0.003 aga:0.000 agc:0.006 agg:0.000 agt:0.000 ata:0.000 atc:0.052 atg:0.024 att:0.011 caa:0.001 cac:0.009 cag:0.031 cat:0.007 cca:0.001 ccc:0.005 ccg:0.030 cct:0.004 cga:0.000 cgc:0.036 cgg:0.001 cgt:0.015 cta:0.000 ctc:0.027 ctg:0.032 ctt:0.014 gaa:0.067 gac:0.038 gag:0.013 gat:0.023 gca:0.016 gcc:0.050 gcg:0.017 gct:0.026 gga:0.001 ggc:0.068 ggg:0.001 ggt:0.020 gta:0.001 gtc:0.039 gtg:0.019 gtt:0.030 taa:0.000 tac:0.011 tag:0.000 tat:0.012 tca:0.000 tcc:0.013 tcg:0.023 tct:0.003 tga:0.000 tgc:0.006 tgg:0.007 tgt:0.000 tta:0.000 ttc:0.026 ttg:0.002 ttt:0.004 CodonUsageIt11 sphere 0.003986711 0.024299953 0.06559089 0.010156621 5.695301E-4 0.03417181 0.016136687 0.0026578072 9.492169E-5 0.0056953016 9.492169E-5 3.7968677E-4 0.0 0.05173232 0.024110109 0.011295681 9.492169E-4 0.008637873 0.031039393 0.0071191266 9.492169E-4 0.0049359277 0.030280018 0.004366398 0.0 0.036355007 5.695301E-4 0.01461794 1.8984338E-4 0.026862837 0.031608924 0.01404841 0.06663503 0.03834836 0.0133839585 0.023065971 0.015567157 0.05002373 0.016706217 0.026483152 0.0014238254 0.06777409 6.644518E-4 0.019933555 7.5937354E-4 0.0393925 0.018984338 0.030090176 0.0 0.011105837 0.0 0.012339819 9.492169E-5 0.013289036 0.022591362 0.0028476508 0.0 0.00560038 0.0071191266 4.7460845E-4 0.0 0.026293308 0.0015187471 0.003986711 0.2 0 255 0 Iteration 12 First 31 genes (1%) aaa:0.004 aac:0.024 aag:0.066 aat:0.010 aca:0.001 acc:0.034 acg:0.016 act:0.003 aga:0.000 agc:0.006 agg:0.000 agt:0.000 ata:0.000 atc:0.052 atg:0.024 att:0.011 caa:0.001 cac:0.009 cag:0.031 cat:0.007 cca:0.001 ccc:0.005 ccg:0.030 cct:0.004 cga:0.000 cgc:0.036 cgg:0.001 cgt:0.015 cta:0.000 ctc:0.027 ctg:0.032 ctt:0.014 gaa:0.067 gac:0.038 gag:0.013 gat:0.023 gca:0.016 gcc:0.050 gcg:0.017 gct:0.026 gga:0.001 ggc:0.068 ggg:0.001 ggt:0.020 gta:0.001 gtc:0.039 gtg:0.019 gtt:0.030 taa:0.000 tac:0.011 tag:0.000 tat:0.012 tca:0.000 tcc:0.013 tcg:0.023 tct:0.003 tga:0.000 tgc:0.006 tgg:0.007 tgt:0.000 tta:0.000 ttc:0.026 ttg:0.002 ttt:0.004 CodonUsageIt12 sphere 0.003986711 0.024299953 0.06559089 0.010156621 5.695301E-4 0.03417181 0.016136687 0.0026578072 9.492169E-5 0.0056953016 9.492169E-5 3.7968677E-4 0.0 0.05173232 0.024110109 0.011295681 9.492169E-4 0.008637873 0.031039393 0.0071191266 9.492169E-4 0.0049359277 0.030280018 0.004366398 0.0 0.036355007 5.695301E-4 0.01461794 1.8984338E-4 0.026862837 0.031608924 0.01404841 0.06663503 0.03834836 0.0133839585 0.023065971 0.015567157 0.05002373 0.016706217 0.026483152 0.0014238254 0.06777409 6.644518E-4 0.019933555 7.5937354E-4 0.0393925 0.018984338 0.030090176 0.0 0.011105837 0.0 0.012339819 9.492169E-5 0.013289036 0.022591362 0.0028476508 0.0 0.00560038 0.0071191266 4.7460845E-4 0.0 0.026293308 0.0015187471 0.003986711 0.2 0 255 0 Iteration 13 First 31 genes (1%) aaa:0.004 aac:0.024 aag:0.066 aat:0.010 aca:0.001 acc:0.034 acg:0.016 act:0.003 aga:0.000 agc:0.006 agg:0.000 agt:0.000 ata:0.000 atc:0.052 atg:0.024 att:0.011 caa:0.001 cac:0.009 cag:0.031 cat:0.007 cca:0.001 ccc:0.005 ccg:0.030 cct:0.004 cga:0.000 cgc:0.036 cgg:0.001 cgt:0.015 cta:0.000 ctc:0.027 ctg:0.032 ctt:0.014 gaa:0.067 gac:0.038 gag:0.013 gat:0.023 gca:0.016 gcc:0.050 gcg:0.017 gct:0.026 gga:0.001 ggc:0.068 ggg:0.001 ggt:0.020 gta:0.001 gtc:0.039 gtg:0.019 gtt:0.030 taa:0.000 tac:0.011 tag:0.000 tat:0.012 tca:0.000 tcc:0.013 tcg:0.023 tct:0.003 tga:0.000 tgc:0.006 tgg:0.007 tgt:0.000 tta:0.000 ttc:0.026 ttg:0.002 ttt:0.004 CodonUsageIt13 sphere 0.003986711 0.024299953 0.06559089 0.010156621 5.695301E-4 0.03417181 0.016136687 0.0026578072 9.492169E-5 0.0056953016 9.492169E-5 3.7968677E-4 0.0 0.05173232 0.024110109 0.011295681 9.492169E-4 0.008637873 0.031039393 0.0071191266 9.492169E-4 0.0049359277 0.030280018 0.004366398 0.0 0.036355007 5.695301E-4 0.01461794 1.8984338E-4 0.026862837 0.031608924 0.01404841 0.06663503 0.03834836 0.0133839585 0.023065971 0.015567157 0.05002373 0.016706217 0.026483152 0.0014238254 0.06777409 6.644518E-4 0.019933555 7.5937354E-4 0.0393925 0.018984338 0.030090176 0.0 0.011105837 0.0 0.012339819 9.492169E-5 0.013289036 0.022591362 0.0028476508 0.0 0.00560038 0.0071191266 4.7460845E-4 0.0 0.026293308 0.0015187471 0.003986711 0.2 0 255 0 Iteration 14 First 31 genes (1%) aaa:0.004 aac:0.024 aag:0.066 aat:0.010 aca:0.001 acc:0.034 acg:0.016 act:0.003 aga:0.000 agc:0.006 agg:0.000 agt:0.000 ata:0.000 atc:0.052 atg:0.024 att:0.011 caa:0.001 cac:0.009 cag:0.031 cat:0.007 cca:0.001 ccc:0.005 ccg:0.030 cct:0.004 cga:0.000 cgc:0.036 cgg:0.001 cgt:0.015 cta:0.000 ctc:0.027 ctg:0.032 ctt:0.014 gaa:0.067 gac:0.038 gag:0.013 gat:0.023 gca:0.016 gcc:0.050 gcg:0.017 gct:0.026 gga:0.001 ggc:0.068 ggg:0.001 ggt:0.020 gta:0.001 gtc:0.039 gtg:0.019 gtt:0.030 taa:0.000 tac:0.011 tag:0.000 tat:0.012 tca:0.000 tcc:0.013 tcg:0.023 tct:0.003 tga:0.000 tgc:0.006 tgg:0.007 tgt:0.000 tta:0.000 ttc:0.026 ttg:0.002 ttt:0.004 CodonUsageIt14 sphere 0.003986711 0.024299953 0.06559089 0.010156621 5.695301E-4 0.03417181 0.016136687 0.0026578072 9.492169E-5 0.0056953016 9.492169E-5 3.7968677E-4 0.0 0.05173232 0.024110109 0.011295681 9.492169E-4 0.008637873 0.031039393 0.0071191266 9.492169E-4 0.0049359277 0.030280018 0.004366398 0.0 0.036355007 5.695301E-4 0.01461794 1.8984338E-4 0.026862837 0.031608924 0.01404841 0.06663503 0.03834836 0.0133839585 0.023065971 0.015567157 0.05002373 0.016706217 0.026483152 0.0014238254 0.06777409 6.644518E-4 0.019933555 7.5937354E-4 0.0393925 0.018984338 0.030090176 0.0 0.011105837 0.0 0.012339819 9.492169E-5 0.013289036 0.022591362 0.0028476508 0.0 0.00560038 0.0071191266 4.7460845E-4 0.0 0.026293308 0.0015187471 0.003986711 0.2 0 255 0 aaa:0.061 aac:1.000 aag:1.000 aat:0.418 aca:0.017 acc:1.000 acg:0.472 act:0.078 aga:0.003 agc:0.252 agg:0.003 agt:0.017 ata:0.000 atc:1.000 atg:1.000 att:0.218 caa:0.031 cac:1.000 cag:1.000 cat:0.824 cca:0.031 ccc:0.163 ccg:1.000 cct:0.144 cga:0.000 cgc:1.000 cgg:0.016 cgt:0.402 cta:0.006 ctc:0.850 ctg:1.000 ctt:0.444 gaa:1.000 gac:1.000 gag:0.201 gat:0.601 gca:0.311 gcc:1.000 gcg:0.334 gct:0.529 gga:0.021 ggc:1.000 ggg:0.010 ggt:0.294 gta:0.019 gtc:1.000 gtg:0.482 gtt:0.764 taa:0.000 tac:0.900 tag:0.000 tat:1.000 tca:0.004 tcc:0.588 tcg:1.000 tct:0.126 tga:0.000 tgc:1.000 tgg:1.000 tgt:0.085 tta:0.000 ttc:1.000 ttg:0.048 ttt:0.152 ttt:0.152 ttc:1.000 ttg:0.048 tta:0.000 tct:0.126 tcc:0.588 tcg:1.000 tca:0.004 tgt:0.085 tgc:1.000 tgg:1.000 tga:0.000 tat:1.000 tac:0.900 tag:0.000 taa:0.000 ctt:0.444 ctc:0.850 ctg:1.000 cta:0.006 cct:0.144 ccc:0.163 ccg:1.000 cca:0.031 cgt:0.402 cgc:1.000 cgg:0.016 cga:0.000 cat:0.824 cac:1.000 cag:1.000 caa:0.031 gtt:0.764 gtc:1.000 gtg:0.482 gta:0.019 gct:0.529 gcc:1.000 gcg:0.334 gca:0.311 ggt:0.294 ggc:1.000 ggg:0.010 gga:0.021 gat:0.601 gac:1.000 gag:0.201 gaa:1.000 att:0.218 atc:1.000 atg:1.000 ata:0.000 act:0.078 acc:1.000 acg:0.472 aca:0.017 agt:0.017 agc:0.252 agg:0.003 aga:0.003 aat:0.418 aac:1.000 aag:1.000 aaa:0.061 // 0 - CAICLASS // 1 - STRAND // 2 - GC_CONT // 3 - GC_CONT3 // 4 - GC_SKEW // 5 - AT_SKEW // 6 - GENELENGTH // 7 - CAIEXT --- -0.0084988875 0.4544361 0.71913654 -0.19049504 0.101763114 0.29240772 NaN