AdditionalInfoFile = "" ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 Looking for randomclass.txt... Loading sequence... Loaded... Getting seq... Got NC_004310 2116 CDS features found Getting seq... Got NC_004311 1148 CDS features found CodonUsage sphere 0.012961743 0.014544709 0.028730929 0.016668646 0.0066460785 0.021799786 0.01952144 0.0034974248 0.0016466726 0.013664683 0.0034898662 0.002987766 0.0040006046 0.037011802 0.023302848 0.018402781 0.0069376207 0.007258317 0.0250467 0.013676561 0.004819082 0.011779378 0.02630357 0.0058524366 0.0023550119 0.037252594 0.009687834 0.011759942 0.0016056407 0.02108281 0.04009891 0.024484133 0.03768127 0.024241181 0.020903565 0.03067886 0.01997603 0.044448283 0.037238557 0.014117113 0.00674218 0.051332995 0.0107514225 0.014559826 0.0039703706 0.02399391 0.028300093 0.016084483 0.0 0.005817883 0.0 0.018271048 0.0042435564 0.015029532 0.016312318 0.0035654511 0.0 0.0068134456 0.012184298 0.0018842254 0.0013907636 0.026433146 0.010216929 0.0139389485 0.4 255 0 0 aaa:0.013 aac:0.015 aag:0.029 aat:0.017 aca:0.007 acc:0.022 acg:0.020 act:0.003 aga:0.002 agc:0.014 agg:0.003 agt:0.003 ata:0.004 atc:0.037 atg:0.023 att:0.018 caa:0.007 cac:0.007 cag:0.025 cat:0.014 cca:0.005 ccc:0.012 ccg:0.026 cct:0.006 cga:0.002 cgc:0.037 cgg:0.010 cgt:0.012 cta:0.002 ctc:0.021 ctg:0.040 ctt:0.024 gaa:0.038 gac:0.024 gag:0.021 gat:0.031 gca:0.020 gcc:0.044 gcg:0.037 gct:0.014 gga:0.007 ggc:0.051 ggg:0.011 ggt:0.015 gta:0.004 gtc:0.024 gtg:0.028 gtt:0.016 taa:0.000 tac:0.006 tag:0.000 tat:0.018 tca:0.004 tcc:0.015 tcg:0.016 tct:0.004 tga:0.000 tgc:0.007 tgg:0.012 tgt:0.002 tta:0.001 ttc:0.026 ttg:0.010 ttt:0.014 Number of points = 3264 Iteration 0 First 1632 genes (50%) aaa:0.011 aac:0.015 aag:0.033 aat:0.017 aca:0.005 acc:0.024 acg:0.020 act:0.003 aga:0.001 agc:0.012 agg:0.002 agt:0.002 ata:0.002 atc:0.040 atg:0.024 att:0.017 caa:0.005 cac:0.007 cag:0.027 cat:0.013 cca:0.004 ccc:0.011 ccg:0.028 cct:0.005 cga:0.001 cgc:0.040 cgg:0.007 cgt:0.011 cta:0.001 ctc:0.022 ctg:0.042 ctt:0.023 gaa:0.041 gac:0.027 gag:0.021 gat:0.031 gca:0.018 gcc:0.047 gcg:0.037 gct:0.013 gga:0.005 ggc:0.056 ggg:0.009 ggt:0.014 gta:0.003 gtc:0.026 gtg:0.030 gtt:0.015 taa:0.000 tac:0.006 tag:0.000 tat:0.019 tca:0.003 tcc:0.016 tcg:0.017 tct:0.003 tga:0.000 tgc:0.006 tgg:0.012 tgt:0.001 tta:0.000 ttc:0.028 ttg:0.007 ttt:0.011 CodonUsageIt0 sphere 0.011052622 0.015450315 0.033407122 0.016541459 0.005056562 0.024261387 0.020231476 0.002684283 7.442785E-4 0.012467972 0.0022676962 0.0018999146 0.0021474264 0.040452495 0.024242213 0.017280508 0.0051768315 0.007120322 0.026649352 0.01329243 0.0035157136 0.011162434 0.028062958 0.004758502 0.0010022485 0.040391486 0.006977393 0.011484897 8.593192E-4 0.022115704 0.04154015 0.023370693 0.04102421 0.026555229 0.02089209 0.030893657 0.018091021 0.046805877 0.037330706 0.012830524 0.0045841974 0.056453608 0.008587963 0.013902495 0.002984086 0.026025344 0.03029928 0.01539628 0.0 0.005842673 0.0 0.018798696 0.0029631695 0.01585993 0.01718987 0.0025674992 0.0 0.006391731 0.011580763 0.0011451779 3.921842E-4 0.028347075 0.0074079237 0.01118858 0.2 0 255 0 Iteration 1 First 816 genes (25%) aaa:0.010 aac:0.017 aag:0.039 aat:0.016 aca:0.004 acc:0.026 acg:0.020 act:0.002 aga:0.000 agc:0.011 agg:0.002 agt:0.001 ata:0.001 atc:0.043 atg:0.025 att:0.016 caa:0.004 cac:0.007 cag:0.028 cat:0.013 cca:0.003 ccc:0.010 ccg:0.029 cct:0.004 cga:0.001 cgc:0.041 cgg:0.005 cgt:0.012 cta:0.001 ctc:0.022 ctg:0.040 ctt:0.022 gaa:0.044 gac:0.029 gag:0.021 gat:0.031 gca:0.017 gcc:0.047 gcg:0.035 gct:0.013 gga:0.003 ggc:0.060 ggg:0.007 ggt:0.014 gta:0.002 gtc:0.028 gtg:0.030 gtt:0.016 taa:0.000 tac:0.006 tag:0.000 tat:0.019 tca:0.002 tcc:0.016 tcg:0.018 tct:0.002 tga:0.000 tgc:0.007 tgg:0.011 tgt:0.001 tta:0.000 ttc:0.030 ttg:0.006 ttt:0.009 CodonUsageIt1 sphere 0.010216599 0.017002784 0.039048962 0.016379664 0.0040794997 0.02618734 0.020257946 0.0024892413 4.446233E-4 0.011083128 0.0015740314 0.001395533 0.0014377235 0.04269033 0.025083894 0.016343962 0.004027573 0.007354134 0.027540682 0.012673387 0.0029533373 0.010028365 0.029033577 0.0043521156 5.8742205E-4 0.04099946 0.0046474496 0.01167055 6.2961254E-4 0.022432381 0.040081006 0.021533398 0.043842454 0.02893946 0.020501353 0.030568663 0.016649034 0.047133315 0.035044104 0.012887585 0.003294107 0.06037465 0.006559005 0.014137073 0.0024762596 0.027680235 0.030192195 0.01552287 0.0 0.006429188 0.0 0.019066876 0.0023431974 0.0162109 0.01818412 0.0022231166 0.0 0.006542778 0.011268117 9.1196457E-4 1.8823468E-4 0.029604772 0.0058742203 0.009090437 0.2 0 255 0 Iteration 2 First 391 genes (12%) aaa:0.009 aac:0.019 aag:0.044 aat:0.016 aca:0.003 acc:0.028 acg:0.020 act:0.002 aga:0.000 agc:0.010 agg:0.001 agt:0.001 ata:0.001 atc:0.045 atg:0.026 att:0.015 caa:0.003 cac:0.008 cag:0.029 cat:0.012 cca:0.003 ccc:0.009 ccg:0.030 cct:0.004 cga:0.000 cgc:0.041 cgg:0.003 cgt:0.013 cta:0.000 ctc:0.023 ctg:0.038 ctt:0.020 gaa:0.047 gac:0.031 gag:0.020 gat:0.030 gca:0.016 gcc:0.047 gcg:0.032 gct:0.014 gga:0.002 ggc:0.063 ggg:0.004 ggt:0.015 gta:0.002 gtc:0.029 gtg:0.029 gtt:0.017 taa:0.000 tac:0.007 tag:0.000 tat:0.019 tca:0.002 tcc:0.016 tcg:0.019 tct:0.002 tga:0.000 tgc:0.007 tgg:0.011 tgt:0.001 tta:0.000 ttc:0.030 ttg:0.005 ttt:0.007 CodonUsageIt2 sphere 0.00920281 0.018682735 0.04431269 0.015776245 0.0031707159 0.027692208 0.019758973 0.002307147 2.448927E-4 0.009518593 0.001018238 0.001018238 7.7978993E-4 0.045098923 0.026197074 0.0153702395 0.0029322677 0.007772121 0.028607333 0.012128633 0.0025198169 0.008629246 0.030141136 0.0042147324 3.608945E-4 0.04130953 0.0028227107 0.012515306 4.3822904E-4 0.022987692 0.038377263 0.019546304 0.04724496 0.030598698 0.020139202 0.030192692 0.015930915 0.047290068 0.03168138 0.013881549 0.0022233678 0.06264742 0.0043629566 0.01493201 0.0021073662 0.028691113 0.028568666 0.016839596 0.0 0.007456338 0.0 0.01894696 0.0017722498 0.016092028 0.019372301 0.0020300315 0.0 0.0070374426 0.0112972865 7.5401174E-4 1.1600181E-4 0.030411806 0.004640072 0.00728878 0.2 0 255 0 Iteration 3 First 195 genes (6%) aaa:0.007 aac:0.021 aag:0.052 aat:0.014 aca:0.002 acc:0.029 acg:0.019 act:0.002 aga:0.000 agc:0.008 agg:0.001 agt:0.001 ata:0.000 atc:0.047 atg:0.026 att:0.014 caa:0.002 cac:0.008 cag:0.029 cat:0.011 cca:0.002 ccc:0.007 ccg:0.031 cct:0.004 cga:0.000 cgc:0.040 cgg:0.002 cgt:0.014 cta:0.000 ctc:0.024 ctg:0.037 ctt:0.017 gaa:0.053 gac:0.034 gag:0.019 gat:0.029 gca:0.015 gcc:0.047 gcg:0.027 gct:0.017 gga:0.002 ggc:0.065 ggg:0.003 ggt:0.016 gta:0.002 gtc:0.031 gtg:0.026 gtt:0.019 taa:0.000 tac:0.009 tag:0.000 tat:0.018 tca:0.001 tcc:0.016 tcg:0.021 tct:0.002 tga:0.000 tgc:0.007 tgg:0.010 tgt:0.001 tta:0.000 ttc:0.030 ttg:0.004 ttt:0.005 CodonUsageIt3 sphere 0.0074757175 0.020871986 0.05223453 0.014296628 0.0021144822 0.028797884 0.018948488 0.002128124 1.3641821E-4 0.00793954 8.048674E-4 6.684492E-4 3.6832914E-4 0.047241624 0.02600131 0.014446688 0.0019507803 0.00838972 0.029343555 0.0107770385 0.002278184 0.0067390595 0.031348903 0.0041198297 1.9098549E-4 0.039820474 0.0015688094 0.013696387 3.5468733E-4 0.02383226 0.036901124 0.017202336 0.052807488 0.033613447 0.01888028 0.028838808 0.015210629 0.0473644 0.02683346 0.016806724 0.0015278839 0.064935066 0.0025783041 0.01581087 0.0020189895 0.030557677 0.025605697 0.019248608 0.0 0.008785333 0.0 0.017693441 0.001295973 0.016056422 0.021240314 0.0021963331 0.0 0.007352941 0.009931245 5.1838916E-4 2.728364E-5 0.03020299 0.003574157 0.0054976535 0.2 0 255 0 Iteration 4 First 97 genes (3%) aaa:0.006 aac:0.023 aag:0.057 aat:0.012 aca:0.001 acc:0.031 acg:0.018 act:0.002 aga:0.000 agc:0.007 agg:0.001 agt:0.000 ata:0.000 atc:0.049 atg:0.025 att:0.013 caa:0.001 cac:0.009 cag:0.030 cat:0.010 cca:0.002 ccc:0.005 ccg:0.032 cct:0.004 cga:0.000 cgc:0.039 cgg:0.001 cgt:0.014 cta:0.000 ctc:0.024 ctg:0.037 ctt:0.017 gaa:0.058 gac:0.036 gag:0.017 gat:0.026 gca:0.015 gcc:0.050 gcg:0.024 gct:0.019 gga:0.001 ggc:0.065 ggg:0.002 ggt:0.017 gta:0.001 gtc:0.033 gtg:0.022 gtt:0.022 taa:0.000 tac:0.010 tag:0.000 tat:0.016 tca:0.001 tcc:0.015 tcg:0.022 tct:0.002 tga:0.000 tgc:0.007 tgg:0.009 tgt:0.000 tta:0.000 ttc:0.030 ttg:0.003 ttt:0.005 CodonUsageIt4 sphere 0.006400505 0.022846647 0.057489738 0.01199736 0.0013202836 0.030940559 0.018196952 0.0024970581 1.4350908E-4 0.006888436 5.740363E-4 4.3052726E-4 1.722109E-4 0.049481932 0.02514279 0.013202836 0.0012341781 0.009069774 0.029562872 0.0099882325 0.0015785999 0.0052524325 0.032031227 0.0043339743 5.7403635E-5 0.039436296 9.1845816E-4 0.013662064 3.7312362E-4 0.024052123 0.036594816 0.017048879 0.058235988 0.03619299 0.017020177 0.026434373 0.01452312 0.04979765 0.023679 0.019258918 0.0012054764 0.0647513 0.0017795126 0.016675755 0.0012054764 0.032605264 0.021928187 0.021842083 0.0 0.010189145 0.0 0.015900806 0.0010045636 0.014666628 0.022100398 0.0020091273 0.0 0.006859734 0.009328091 4.0182544E-4 0.0 0.030079504 0.002669269 0.0047358 0.2 0 255 0 Iteration 5 First 32 genes (1%) aaa:0.004 aac:0.025 aag:0.066 aat:0.010 aca:0.000 acc:0.033 acg:0.017 act:0.002 aga:0.000 agc:0.006 agg:0.000 agt:0.000 ata:0.000 atc:0.052 atg:0.023 att:0.011 caa:0.001 cac:0.009 cag:0.031 cat:0.008 cca:0.001 ccc:0.005 ccg:0.030 cct:0.004 cga:0.000 cgc:0.038 cgg:0.001 cgt:0.014 cta:0.000 ctc:0.026 ctg:0.033 ctt:0.014 gaa:0.066 gac:0.039 gag:0.013 gat:0.022 gca:0.014 gcc:0.049 gcg:0.016 gct:0.024 gga:0.001 ggc:0.070 ggg:0.001 ggt:0.020 gta:0.001 gtc:0.039 gtg:0.020 gtt:0.029 taa:0.000 tac:0.011 tag:0.000 tat:0.013 tca:0.000 tcc:0.014 tcg:0.023 tct:0.002 tga:0.000 tgc:0.007 tgg:0.008 tgt:0.000 tta:0.000 ttc:0.027 ttg:0.001 ttt:0.004 CodonUsageIt5 sphere 0.00438378 0.024509316 0.065557435 0.009863505 4.981568E-4 0.03297798 0.016738068 0.002490784 0.0 0.006077513 9.963136E-5 3.9852544E-4 0.0 0.05190794 0.022915214 0.011457607 6.974196E-4 0.009066454 0.031084986 0.007970509 7.970509E-4 0.004881937 0.030487197 0.00438378 0.0 0.038258445 5.977882E-4 0.014048022 1.9926272E-4 0.026103416 0.03287835 0.014048022 0.066155225 0.039155126 0.013250971 0.022317426 0.014247285 0.048819367 0.016439175 0.023513002 0.0012952078 0.07033974 7.970509E-4 0.019826641 5.977882E-4 0.03865697 0.01972701 0.02919199 0.0 0.011357975 0.0 0.013450234 9.963136E-5 0.013549865 0.022516688 0.0023911528 0.0 0.00657567 0.007870878 2.988941E-4 0.0 0.02709973 0.0011955764 0.0038856233 0.2 0 255 0 Iteration 6 First 32 genes (1%) aaa:0.004 aac:0.024 aag:0.069 aat:0.009 aca:0.001 acc:0.033 acg:0.017 act:0.003 aga:0.000 agc:0.005 agg:0.000 agt:0.000 ata:0.000 atc:0.051 atg:0.020 att:0.011 caa:0.001 cac:0.009 cag:0.031 cat:0.007 cca:0.001 ccc:0.005 ccg:0.030 cct:0.005 cga:0.000 cgc:0.037 cgg:0.000 cgt:0.015 cta:0.000 ctc:0.028 ctg:0.033 ctt:0.015 gaa:0.067 gac:0.040 gag:0.012 gat:0.022 gca:0.016 gcc:0.050 gcg:0.016 gct:0.027 gga:0.001 ggc:0.068 ggg:0.001 ggt:0.021 gta:0.001 gtc:0.041 gtg:0.019 gtt:0.032 taa:0.000 tac:0.011 tag:0.000 tat:0.012 tca:0.000 tcc:0.013 tcg:0.023 tct:0.003 tga:0.000 tgc:0.005 tgg:0.006 tgt:0.000 tta:0.000 ttc:0.027 ttg:0.001 ttt:0.004 CodonUsageIt6 sphere 0.0040101307 0.024060786 0.068594344 0.009497678 5.276488E-4 0.033347405 0.01677923 0.0028493034 0.0 0.0054875473 0.0 4.2211905E-4 0.0 0.05149852 0.020156184 0.010658505 6.3317857E-4 0.00907556 0.03070916 0.0067539047 7.387083E-4 0.004854369 0.029653862 0.0046433094 0.0 0.036724355 4.2211905E-4 0.015090755 1.0552976E-4 0.027648797 0.032503165 0.014879696 0.06732798 0.04020684 0.011608274 0.0216336 0.016040523 0.04981005 0.016357113 0.027437737 0.0012663571 0.068488814 6.3317857E-4 0.021105953 6.3317857E-4 0.04062896 0.018995356 0.03176446 0.0 0.010869565 0.0 0.012030393 2.1105952E-4 0.012558041 0.02258337 0.002638244 0.0 0.00453778 0.006226256 1.0552976E-4 0.0 0.027437737 9.497678E-4 0.0035880117 0.2 0 255 0 Iteration 7 First 32 genes (1%) aaa:0.004 aac:0.024 aag:0.069 aat:0.009 aca:0.001 acc:0.034 acg:0.017 act:0.003 aga:0.000 agc:0.005 agg:0.000 agt:0.000 ata:0.000 atc:0.052 atg:0.020 att:0.011 caa:0.001 cac:0.009 cag:0.031 cat:0.006 cca:0.001 ccc:0.005 ccg:0.030 cct:0.004 cga:0.000 cgc:0.037 cgg:0.000 cgt:0.015 cta:0.000 ctc:0.027 ctg:0.033 ctt:0.015 gaa:0.067 gac:0.040 gag:0.012 gat:0.021 gca:0.016 gcc:0.049 gcg:0.017 gct:0.028 gga:0.001 ggc:0.070 ggg:0.001 ggt:0.022 gta:0.001 gtc:0.041 gtg:0.019 gtt:0.031 taa:0.000 tac:0.010 tag:0.000 tat:0.012 tca:0.000 tcc:0.013 tcg:0.023 tct:0.003 tga:0.000 tgc:0.004 tgg:0.006 tgt:0.000 tta:0.000 ttc:0.027 ttg:0.001 ttt:0.004 CodonUsageIt7 sphere 0.004023937 0.023627734 0.069026 0.009182831 5.158894E-4 0.0340487 0.016714817 0.0029921585 0.0 0.0052620717 0.0 4.1271152E-4 0.0 0.051795296 0.02042922 0.010833677 6.190673E-4 0.008770119 0.03064383 0.0063970285 8.2542305E-4 0.0049525383 0.029612051 0.004333471 0.0 0.036731325 4.1271152E-4 0.014960793 1.0317788E-4 0.027342137 0.03250103 0.014960793 0.06737515 0.040033016 0.011865456 0.020841932 0.016095748 0.048803136 0.016714817 0.027548494 0.0012381346 0.06985142 7.2224514E-4 0.021667354 7.2224514E-4 0.040548906 0.019191086 0.031469252 0.0 0.010420966 0.0 0.011865456 2.0635576E-4 0.012690879 0.023008667 0.0025794469 0.0 0.004333471 0.0061906725 1.0317788E-4 0.0 0.027445316 9.286009E-4 0.003508048 0.2 0 255 0 Iteration 8 First 32 genes (1%) aaa:0.004 aac:0.024 aag:0.069 aat:0.009 aca:0.001 acc:0.034 acg:0.017 act:0.003 aga:0.000 agc:0.005 agg:0.000 agt:0.000 ata:0.000 atc:0.052 atg:0.020 att:0.011 caa:0.001 cac:0.009 cag:0.031 cat:0.006 cca:0.001 ccc:0.005 ccg:0.030 cct:0.004 cga:0.000 cgc:0.037 cgg:0.000 cgt:0.015 cta:0.000 ctc:0.027 ctg:0.033 ctt:0.015 gaa:0.067 gac:0.040 gag:0.012 gat:0.021 gca:0.016 gcc:0.049 gcg:0.017 gct:0.028 gga:0.001 ggc:0.070 ggg:0.001 ggt:0.022 gta:0.001 gtc:0.041 gtg:0.019 gtt:0.031 taa:0.000 tac:0.010 tag:0.000 tat:0.012 tca:0.000 tcc:0.013 tcg:0.023 tct:0.003 tga:0.000 tgc:0.004 tgg:0.006 tgt:0.000 tta:0.000 ttc:0.027 ttg:0.001 ttt:0.004 CodonUsageIt8 sphere 0.004023937 0.023627734 0.069026 0.009182831 5.158894E-4 0.0340487 0.016714817 0.0029921585 0.0 0.0052620717 0.0 4.1271152E-4 0.0 0.051795296 0.02042922 0.010833677 6.190673E-4 0.008770119 0.03064383 0.0063970285 8.2542305E-4 0.0049525383 0.029612051 0.004333471 0.0 0.036731325 4.1271152E-4 0.014960793 1.0317788E-4 0.027342137 0.03250103 0.014960793 0.06737515 0.040033016 0.011865456 0.020841932 0.016095748 0.048803136 0.016714817 0.027548494 0.0012381346 0.06985142 7.2224514E-4 0.021667354 7.2224514E-4 0.040548906 0.019191086 0.031469252 0.0 0.010420966 0.0 0.011865456 2.0635576E-4 0.012690879 0.023008667 0.0025794469 0.0 0.004333471 0.0061906725 1.0317788E-4 0.0 0.027445316 9.286009E-4 0.003508048 0.2 0 255 0 Iteration 9 First 32 genes (1%) aaa:0.004 aac:0.024 aag:0.069 aat:0.009 aca:0.001 acc:0.034 acg:0.017 act:0.003 aga:0.000 agc:0.005 agg:0.000 agt:0.000 ata:0.000 atc:0.052 atg:0.020 att:0.011 caa:0.001 cac:0.009 cag:0.031 cat:0.006 cca:0.001 ccc:0.005 ccg:0.030 cct:0.004 cga:0.000 cgc:0.037 cgg:0.000 cgt:0.015 cta:0.000 ctc:0.027 ctg:0.033 ctt:0.015 gaa:0.067 gac:0.040 gag:0.012 gat:0.021 gca:0.016 gcc:0.049 gcg:0.017 gct:0.028 gga:0.001 ggc:0.070 ggg:0.001 ggt:0.022 gta:0.001 gtc:0.041 gtg:0.019 gtt:0.031 taa:0.000 tac:0.010 tag:0.000 tat:0.012 tca:0.000 tcc:0.013 tcg:0.023 tct:0.003 tga:0.000 tgc:0.004 tgg:0.006 tgt:0.000 tta:0.000 ttc:0.027 ttg:0.001 ttt:0.004 CodonUsageIt9 sphere 0.004023937 0.023627734 0.069026 0.009182831 5.158894E-4 0.0340487 0.016714817 0.0029921585 0.0 0.0052620717 0.0 4.1271152E-4 0.0 0.051795296 0.02042922 0.010833677 6.190673E-4 0.008770119 0.03064383 0.0063970285 8.2542305E-4 0.0049525383 0.029612051 0.004333471 0.0 0.036731325 4.1271152E-4 0.014960793 1.0317788E-4 0.027342137 0.03250103 0.014960793 0.06737515 0.040033016 0.011865456 0.020841932 0.016095748 0.048803136 0.016714817 0.027548494 0.0012381346 0.06985142 7.2224514E-4 0.021667354 7.2224514E-4 0.040548906 0.019191086 0.031469252 0.0 0.010420966 0.0 0.011865456 2.0635576E-4 0.012690879 0.023008667 0.0025794469 0.0 0.004333471 0.0061906725 1.0317788E-4 0.0 0.027445316 9.286009E-4 0.003508048 0.2 0 255 0 Iteration 10 First 32 genes (1%) aaa:0.004 aac:0.024 aag:0.069 aat:0.009 aca:0.001 acc:0.034 acg:0.017 act:0.003 aga:0.000 agc:0.005 agg:0.000 agt:0.000 ata:0.000 atc:0.052 atg:0.020 att:0.011 caa:0.001 cac:0.009 cag:0.031 cat:0.006 cca:0.001 ccc:0.005 ccg:0.030 cct:0.004 cga:0.000 cgc:0.037 cgg:0.000 cgt:0.015 cta:0.000 ctc:0.027 ctg:0.033 ctt:0.015 gaa:0.067 gac:0.040 gag:0.012 gat:0.021 gca:0.016 gcc:0.049 gcg:0.017 gct:0.028 gga:0.001 ggc:0.070 ggg:0.001 ggt:0.022 gta:0.001 gtc:0.041 gtg:0.019 gtt:0.031 taa:0.000 tac:0.010 tag:0.000 tat:0.012 tca:0.000 tcc:0.013 tcg:0.023 tct:0.003 tga:0.000 tgc:0.004 tgg:0.006 tgt:0.000 tta:0.000 ttc:0.027 ttg:0.001 ttt:0.004 CodonUsageIt10 sphere 0.004023937 0.023627734 0.069026 0.009182831 5.158894E-4 0.0340487 0.016714817 0.0029921585 0.0 0.0052620717 0.0 4.1271152E-4 0.0 0.051795296 0.02042922 0.010833677 6.190673E-4 0.008770119 0.03064383 0.0063970285 8.2542305E-4 0.0049525383 0.029612051 0.004333471 0.0 0.036731325 4.1271152E-4 0.014960793 1.0317788E-4 0.027342137 0.03250103 0.014960793 0.06737515 0.040033016 0.011865456 0.020841932 0.016095748 0.048803136 0.016714817 0.027548494 0.0012381346 0.06985142 7.2224514E-4 0.021667354 7.2224514E-4 0.040548906 0.019191086 0.031469252 0.0 0.010420966 0.0 0.011865456 2.0635576E-4 0.012690879 0.023008667 0.0025794469 0.0 0.004333471 0.0061906725 1.0317788E-4 0.0 0.027445316 9.286009E-4 0.003508048 0.2 0 255 0 Iteration 11 First 32 genes (1%) aaa:0.004 aac:0.024 aag:0.069 aat:0.009 aca:0.001 acc:0.034 acg:0.017 act:0.003 aga:0.000 agc:0.005 agg:0.000 agt:0.000 ata:0.000 atc:0.052 atg:0.020 att:0.011 caa:0.001 cac:0.009 cag:0.031 cat:0.006 cca:0.001 ccc:0.005 ccg:0.030 cct:0.004 cga:0.000 cgc:0.037 cgg:0.000 cgt:0.015 cta:0.000 ctc:0.027 ctg:0.033 ctt:0.015 gaa:0.067 gac:0.040 gag:0.012 gat:0.021 gca:0.016 gcc:0.049 gcg:0.017 gct:0.028 gga:0.001 ggc:0.070 ggg:0.001 ggt:0.022 gta:0.001 gtc:0.041 gtg:0.019 gtt:0.031 taa:0.000 tac:0.010 tag:0.000 tat:0.012 tca:0.000 tcc:0.013 tcg:0.023 tct:0.003 tga:0.000 tgc:0.004 tgg:0.006 tgt:0.000 tta:0.000 ttc:0.027 ttg:0.001 ttt:0.004 CodonUsageIt11 sphere 0.004023937 0.023627734 0.069026 0.009182831 5.158894E-4 0.0340487 0.016714817 0.0029921585 0.0 0.0052620717 0.0 4.1271152E-4 0.0 0.051795296 0.02042922 0.010833677 6.190673E-4 0.008770119 0.03064383 0.0063970285 8.2542305E-4 0.0049525383 0.029612051 0.004333471 0.0 0.036731325 4.1271152E-4 0.014960793 1.0317788E-4 0.027342137 0.03250103 0.014960793 0.06737515 0.040033016 0.011865456 0.020841932 0.016095748 0.048803136 0.016714817 0.027548494 0.0012381346 0.06985142 7.2224514E-4 0.021667354 7.2224514E-4 0.040548906 0.019191086 0.031469252 0.0 0.010420966 0.0 0.011865456 2.0635576E-4 0.012690879 0.023008667 0.0025794469 0.0 0.004333471 0.0061906725 1.0317788E-4 0.0 0.027445316 9.286009E-4 0.003508048 0.2 0 255 0 Iteration 12 First 32 genes (1%) aaa:0.004 aac:0.024 aag:0.069 aat:0.009 aca:0.001 acc:0.034 acg:0.017 act:0.003 aga:0.000 agc:0.005 agg:0.000 agt:0.000 ata:0.000 atc:0.052 atg:0.020 att:0.011 caa:0.001 cac:0.009 cag:0.031 cat:0.006 cca:0.001 ccc:0.005 ccg:0.030 cct:0.004 cga:0.000 cgc:0.037 cgg:0.000 cgt:0.015 cta:0.000 ctc:0.027 ctg:0.033 ctt:0.015 gaa:0.067 gac:0.040 gag:0.012 gat:0.021 gca:0.016 gcc:0.049 gcg:0.017 gct:0.028 gga:0.001 ggc:0.070 ggg:0.001 ggt:0.022 gta:0.001 gtc:0.041 gtg:0.019 gtt:0.031 taa:0.000 tac:0.010 tag:0.000 tat:0.012 tca:0.000 tcc:0.013 tcg:0.023 tct:0.003 tga:0.000 tgc:0.004 tgg:0.006 tgt:0.000 tta:0.000 ttc:0.027 ttg:0.001 ttt:0.004 CodonUsageIt12 sphere 0.004023937 0.023627734 0.069026 0.009182831 5.158894E-4 0.0340487 0.016714817 0.0029921585 0.0 0.0052620717 0.0 4.1271152E-4 0.0 0.051795296 0.02042922 0.010833677 6.190673E-4 0.008770119 0.03064383 0.0063970285 8.2542305E-4 0.0049525383 0.029612051 0.004333471 0.0 0.036731325 4.1271152E-4 0.014960793 1.0317788E-4 0.027342137 0.03250103 0.014960793 0.06737515 0.040033016 0.011865456 0.020841932 0.016095748 0.048803136 0.016714817 0.027548494 0.0012381346 0.06985142 7.2224514E-4 0.021667354 7.2224514E-4 0.040548906 0.019191086 0.031469252 0.0 0.010420966 0.0 0.011865456 2.0635576E-4 0.012690879 0.023008667 0.0025794469 0.0 0.004333471 0.0061906725 1.0317788E-4 0.0 0.027445316 9.286009E-4 0.003508048 0.2 0 255 0 Iteration 13 First 32 genes (1%) aaa:0.004 aac:0.024 aag:0.069 aat:0.009 aca:0.001 acc:0.034 acg:0.017 act:0.003 aga:0.000 agc:0.005 agg:0.000 agt:0.000 ata:0.000 atc:0.052 atg:0.020 att:0.011 caa:0.001 cac:0.009 cag:0.031 cat:0.006 cca:0.001 ccc:0.005 ccg:0.030 cct:0.004 cga:0.000 cgc:0.037 cgg:0.000 cgt:0.015 cta:0.000 ctc:0.027 ctg:0.033 ctt:0.015 gaa:0.067 gac:0.040 gag:0.012 gat:0.021 gca:0.016 gcc:0.049 gcg:0.017 gct:0.028 gga:0.001 ggc:0.070 ggg:0.001 ggt:0.022 gta:0.001 gtc:0.041 gtg:0.019 gtt:0.031 taa:0.000 tac:0.010 tag:0.000 tat:0.012 tca:0.000 tcc:0.013 tcg:0.023 tct:0.003 tga:0.000 tgc:0.004 tgg:0.006 tgt:0.000 tta:0.000 ttc:0.027 ttg:0.001 ttt:0.004 CodonUsageIt13 sphere 0.004023937 0.023627734 0.069026 0.009182831 5.158894E-4 0.0340487 0.016714817 0.0029921585 0.0 0.0052620717 0.0 4.1271152E-4 0.0 0.051795296 0.02042922 0.010833677 6.190673E-4 0.008770119 0.03064383 0.0063970285 8.2542305E-4 0.0049525383 0.029612051 0.004333471 0.0 0.036731325 4.1271152E-4 0.014960793 1.0317788E-4 0.027342137 0.03250103 0.014960793 0.06737515 0.040033016 0.011865456 0.020841932 0.016095748 0.048803136 0.016714817 0.027548494 0.0012381346 0.06985142 7.2224514E-4 0.021667354 7.2224514E-4 0.040548906 0.019191086 0.031469252 0.0 0.010420966 0.0 0.011865456 2.0635576E-4 0.012690879 0.023008667 0.0025794469 0.0 0.004333471 0.0061906725 1.0317788E-4 0.0 0.027445316 9.286009E-4 0.003508048 0.2 0 255 0 Iteration 14 First 32 genes (1%) aaa:0.004 aac:0.024 aag:0.069 aat:0.009 aca:0.001 acc:0.034 acg:0.017 act:0.003 aga:0.000 agc:0.005 agg:0.000 agt:0.000 ata:0.000 atc:0.052 atg:0.020 att:0.011 caa:0.001 cac:0.009 cag:0.031 cat:0.006 cca:0.001 ccc:0.005 ccg:0.030 cct:0.004 cga:0.000 cgc:0.037 cgg:0.000 cgt:0.015 cta:0.000 ctc:0.027 ctg:0.033 ctt:0.015 gaa:0.067 gac:0.040 gag:0.012 gat:0.021 gca:0.016 gcc:0.049 gcg:0.017 gct:0.028 gga:0.001 ggc:0.070 ggg:0.001 ggt:0.022 gta:0.001 gtc:0.041 gtg:0.019 gtt:0.031 taa:0.000 tac:0.010 tag:0.000 tat:0.012 tca:0.000 tcc:0.013 tcg:0.023 tct:0.003 tga:0.000 tgc:0.004 tgg:0.006 tgt:0.000 tta:0.000 ttc:0.027 ttg:0.001 ttt:0.004 CodonUsageIt14 sphere 0.004023937 0.023627734 0.069026 0.009182831 5.158894E-4 0.0340487 0.016714817 0.0029921585 0.0 0.0052620717 0.0 4.1271152E-4 0.0 0.051795296 0.02042922 0.010833677 6.190673E-4 0.008770119 0.03064383 0.0063970285 8.2542305E-4 0.0049525383 0.029612051 0.004333471 0.0 0.036731325 4.1271152E-4 0.014960793 1.0317788E-4 0.027342137 0.03250103 0.014960793 0.06737515 0.040033016 0.011865456 0.020841932 0.016095748 0.048803136 0.016714817 0.027548494 0.0012381346 0.06985142 7.2224514E-4 0.021667354 7.2224514E-4 0.040548906 0.019191086 0.031469252 0.0 0.010420966 0.0 0.011865456 2.0635576E-4 0.012690879 0.023008667 0.0025794469 0.0 0.004333471 0.0061906725 1.0317788E-4 0.0 0.027445316 9.286009E-4 0.003508048 0.2 0 255 0 aaa:0.058 aac:1.000 aag:1.000 aat:0.389 aca:0.015 acc:1.000 acg:0.491 act:0.088 aga:0.000 agc:0.229 agg:0.000 agt:0.018 ata:0.000 atc:1.000 atg:1.000 att:0.209 caa:0.020 cac:1.000 cag:1.000 cat:0.729 cca:0.028 ccc:0.167 ccg:1.000 cct:0.146 cga:0.000 cgc:1.000 cgg:0.011 cgt:0.407 cta:0.003 ctc:0.841 ctg:1.000 ctt:0.460 gaa:1.000 gac:1.000 gag:0.176 gat:0.521 gca:0.330 gcc:1.000 gcg:0.342 gct:0.564 gga:0.018 ggc:1.000 ggg:0.010 ggt:0.310 gta:0.018 gtc:1.000 gtg:0.473 gtt:0.776 taa:0.000 tac:0.878 tag:0.000 tat:1.000 tca:0.009 tcc:0.552 tcg:1.000 tct:0.112 tga:0.000 tgc:1.000 tgg:1.000 tgt:0.024 tta:0.000 ttc:1.000 ttg:0.029 ttt:0.128 ttt:0.128 ttc:1.000 ttg:0.029 tta:0.000 tct:0.112 tcc:0.552 tcg:1.000 tca:0.009 tgt:0.024 tgc:1.000 tgg:1.000 tga:0.000 tat:1.000 tac:0.878 tag:0.000 taa:0.000 ctt:0.460 ctc:0.841 ctg:1.000 cta:0.003 cct:0.146 ccc:0.167 ccg:1.000 cca:0.028 cgt:0.407 cgc:1.000 cgg:0.011 cga:0.000 cat:0.729 cac:1.000 cag:1.000 caa:0.020 gtt:0.776 gtc:1.000 gtg:0.473 gta:0.018 gct:0.564 gcc:1.000 gcg:0.342 gca:0.330 ggt:0.310 ggc:1.000 ggg:0.010 gga:0.018 gat:0.521 gac:1.000 gag:0.176 gaa:1.000 att:0.209 atc:1.000 atg:1.000 ata:0.000 act:0.088 acc:1.000 acg:0.491 aca:0.015 agt:0.018 agc:0.229 agg:0.000 aga:0.000 aat:0.389 aac:1.000 aag:1.000 aaa:0.058 // 0 - CAICLASS // 1 - STRAND // 2 - GC_CONT // 3 - GC_CONT3 // 4 - GC_SKEW // 5 - AT_SKEW // 6 - GENELENGTH // 7 - CAIEXT --- -0.017313201 0.5674918 0.7565446 -0.21913749 0.067980535 0.36986408 NaN