AdditionalInfoFile = "" ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 Looking for randomclass.txt... Loading sequence... Loaded... Getting seq... Got AE013218 545 CDS features found CodonUsage sphere 0.09800425 0.01037088 0.008565286 0.062750034 0.019720472 0.0022118527 0.0021836401 0.020098519 0.015793305 0.0025052617 0.0012074909 0.015104922 0.04384772 0.0078938315 0.017976945 0.06574055 0.027129048 0.0022795624 0.003120292 0.01726035 0.011888708 0.0015798947 0.0016758168 0.014518104 0.005642481 0.0016081071 4.6832595E-4 0.011905635 0.00809696 0.0012752007 0.0016024646 0.012328821 0.051702056 0.0046945442 0.0043221405 0.037624065 0.019342424 0.002042578 0.002076433 0.02019444 0.025391165 0.0027591733 0.0023472721 0.023077747 0.019201363 0.002838168 0.0030695098 0.02240065 0.0 0.004632477 0.0 0.03083616 0.018778177 0.0020143657 0.0022682773 0.030982863 0.0 0.0021554278 0.008994115 0.010043616 0.067162454 0.004282643 0.009310094 0.049100872 0.4 255 0 0 aaa:0.098 aac:0.010 aag:0.009 aat:0.063 aca:0.020 acc:0.002 acg:0.002 act:0.020 aga:0.016 agc:0.003 agg:0.001 agt:0.015 ata:0.044 atc:0.008 atg:0.018 att:0.066 caa:0.027 cac:0.002 cag:0.003 cat:0.017 cca:0.012 ccc:0.002 ccg:0.002 cct:0.015 cga:0.006 cgc:0.002 cgg:0.000 cgt:0.012 cta:0.008 ctc:0.001 ctg:0.002 ctt:0.012 gaa:0.052 gac:0.005 gag:0.004 gat:0.038 gca:0.019 gcc:0.002 gcg:0.002 gct:0.020 gga:0.025 ggc:0.003 ggg:0.002 ggt:0.023 gta:0.019 gtc:0.003 gtg:0.003 gtt:0.022 taa:0.000 tac:0.005 tag:0.000 tat:0.031 tca:0.019 tcc:0.002 tcg:0.002 tct:0.031 tga:0.000 tgc:0.002 tgg:0.009 tgt:0.010 tta:0.067 ttc:0.004 ttg:0.009 ttt:0.049 Number of points = 545 Iteration 0 First 272 genes (50%) aaa:0.101 aac:0.010 aag:0.008 aat:0.066 aca:0.019 acc:0.002 acg:0.002 act:0.021 aga:0.016 agc:0.002 agg:0.001 agt:0.015 ata:0.043 atc:0.007 atg:0.018 att:0.067 caa:0.028 cac:0.002 cag:0.003 cat:0.018 cca:0.012 ccc:0.001 ccg:0.002 cct:0.015 cga:0.005 cgc:0.001 cgg:0.000 cgt:0.012 cta:0.007 ctc:0.001 ctg:0.001 ctt:0.011 gaa:0.054 gac:0.004 gag:0.004 gat:0.038 gca:0.019 gcc:0.002 gcg:0.002 gct:0.020 gga:0.024 ggc:0.002 ggg:0.002 ggt:0.024 gta:0.018 gtc:0.002 gtg:0.003 gtt:0.023 taa:0.000 tac:0.004 tag:0.000 tat:0.031 tca:0.019 tcc:0.002 tcg:0.002 tct:0.032 tga:0.000 tgc:0.002 tgg:0.010 tgt:0.010 tta:0.069 ttc:0.004 ttg:0.009 ttt:0.051 CodonUsageIt0 sphere 0.10120334 0.009602921 0.007885413 0.06623747 0.019378673 0.0019119426 0.0019551504 0.020523679 0.015727619 0.0019443484 0.0010369858 0.014906671 0.04318614 0.0068376255 0.018050035 0.06653992 0.02751253 0.0021279813 0.002689682 0.017617958 0.011687694 0.0014474593 0.0015554788 0.014939077 0.0050229 0.0013070342 3.1325614E-4 0.011622882 0.006859229 9.721742E-4 0.0010693916 0.0110179745 0.053750433 0.004083132 0.0040075183 0.03828206 0.018546924 0.001685102 0.0016526962 0.020437263 0.024466384 0.0023764258 0.0018471311 0.023505012 0.018039232 0.0024628413 0.0027652956 0.022522036 0.0 0.0042883684 0.0 0.03135802 0.019076219 0.001685102 0.0018795368 0.032114156 0.0 0.0019551504 0.009700138 0.010477877 0.06921881 0.0038238852 0.008576737 0.05072589 0.2 0 255 0 Iteration 1 First 136 genes (25%) aaa:0.105 aac:0.009 aag:0.008 aat:0.071 aca:0.019 acc:0.001 acg:0.002 act:0.020 aga:0.015 agc:0.002 agg:0.001 agt:0.015 ata:0.043 atc:0.006 atg:0.018 att:0.068 caa:0.028 cac:0.002 cag:0.003 cat:0.018 cca:0.012 ccc:0.001 ccg:0.002 cct:0.014 cga:0.004 cgc:0.001 cgg:0.000 cgt:0.011 cta:0.007 ctc:0.001 ctg:0.001 ctt:0.011 gaa:0.053 gac:0.003 gag:0.004 gat:0.040 gca:0.017 gcc:0.001 gcg:0.001 gct:0.021 gga:0.022 ggc:0.002 ggg:0.002 ggt:0.022 gta:0.017 gtc:0.002 gtg:0.002 gtt:0.022 taa:0.000 tac:0.004 tag:0.000 tat:0.032 tca:0.018 tcc:0.001 tcg:0.002 tct:0.033 tga:0.000 tgc:0.002 tgg:0.011 tgt:0.011 tta:0.071 ttc:0.004 ttg:0.009 ttt:0.054 CodonUsageIt1 sphere 0.105297916 0.009367968 0.008071617 0.07061442 0.019225124 0.0014431074 0.0015654046 0.019592017 0.015189316 0.0018589179 9.2945894E-4 0.015287154 0.04334214 0.0062616183 0.017879855 0.06799726 0.02783485 0.0019567558 0.0028862148 0.01812445 0.011593778 0.00132081 0.0016143235 0.014455533 0.004329322 9.539184E-4 2.4459447E-4 0.011104588 0.0065306723 6.359456E-4 7.827023E-4 0.01056648 0.052759025 0.0033754036 0.0035221602 0.039624304 0.016901478 0.0014675668 0.0011251345 0.020717151 0.022453772 0.0018589179 0.0015409451 0.021915663 0.016877018 0.001981215 0.0023481068 0.022258095 0.0 0.003619998 0.0 0.031601604 0.018466882 0.0013941884 0.0016387829 0.032824576 0.0 0.0016143235 0.010664319 0.010933372 0.071225904 0.003619998 0.008585266 0.054226592 0.2 0 255 0 Iteration 2 First 65 genes (12%) aaa:0.111 aac:0.010 aag:0.007 aat:0.072 aca:0.020 acc:0.001 acg:0.001 act:0.019 aga:0.015 agc:0.002 agg:0.001 agt:0.014 ata:0.047 atc:0.005 atg:0.016 att:0.071 caa:0.027 cac:0.002 cag:0.003 cat:0.020 cca:0.011 ccc:0.001 ccg:0.001 cct:0.014 cga:0.003 cgc:0.001 cgg:0.000 cgt:0.010 cta:0.007 ctc:0.001 ctg:0.001 ctt:0.010 gaa:0.052 gac:0.003 gag:0.003 gat:0.039 gca:0.016 gcc:0.001 gcg:0.001 gct:0.019 gga:0.021 ggc:0.001 ggg:0.002 ggt:0.021 gta:0.016 gtc:0.002 gtg:0.002 gtt:0.023 taa:0.000 tac:0.004 tag:0.000 tat:0.030 tca:0.018 tcc:0.001 tcg:0.001 tct:0.034 tga:0.000 tgc:0.001 tgg:0.012 tgt:0.011 tta:0.073 ttc:0.003 ttg:0.008 ttt:0.057 CodonUsageIt2 sphere 0.11109702 0.009511732 0.007292327 0.071781866 0.019911224 0.0011414078 0.0012048193 0.01934052 0.014648066 0.001521877 7.609385E-4 0.014204185 0.047178186 0.005263158 0.01597971 0.071084335 0.026506023 0.0019657577 0.0027266962 0.019657578 0.011287254 6.9752696E-4 0.0011414078 0.014457831 0.003043754 8.877616E-4 1.2682308E-4 0.009765377 0.0067216232 5.0729234E-4 6.9752696E-4 0.010082435 0.051997464 0.0034876347 0.003043754 0.03868104 0.016106531 0.0011414078 0.0010145847 0.018769816 0.021306278 0.0012048193 0.001521877 0.021306278 0.016487 0.0022194039 0.0019023463 0.02346227 0.0 0.0036778694 0.0 0.03043754 0.017882055 0.0012682308 0.0013950539 0.033988588 0.0 0.0013316424 0.0115409 0.011414077 0.07292327 0.0032339885 0.008116677 0.056943562 0.2 0 255 0 Iteration 3 First 32 genes (6%) aaa:0.116 aac:0.009 aag:0.007 aat:0.073 aca:0.019 acc:0.001 acg:0.000 act:0.019 aga:0.013 agc:0.001 agg:0.001 agt:0.013 ata:0.047 atc:0.004 atg:0.015 att:0.072 caa:0.026 cac:0.002 cag:0.003 cat:0.022 cca:0.010 ccc:0.001 ccg:0.001 cct:0.015 cga:0.003 cgc:0.001 cgg:0.000 cgt:0.012 cta:0.006 ctc:0.000 ctg:0.001 ctt:0.011 gaa:0.057 gac:0.003 gag:0.003 gat:0.044 gca:0.016 gcc:0.001 gcg:0.001 gct:0.018 gga:0.020 ggc:0.000 ggg:0.002 ggt:0.020 gta:0.014 gtc:0.002 gtg:0.002 gtt:0.024 taa:0.000 tac:0.002 tag:0.000 tat:0.030 tca:0.018 tcc:0.001 tcg:0.001 tct:0.034 tga:0.000 tgc:0.001 tgg:0.009 tgt:0.012 tta:0.075 ttc:0.003 ttg:0.008 ttt:0.055 CodonUsageIt3 sphere 0.11594203 0.008622271 0.006604293 0.07283067 0.019079069 5.5035774E-4 3.6690515E-4 0.01926252 0.013208586 9.1726286E-4 0.001284168 0.01284168 0.046780407 0.0036690515 0.015410016 0.072463766 0.025866814 0.0018345257 0.003485599 0.021830857 0.009906439 9.1726286E-4 0.001284168 0.0150431115 0.0033021464 7.338103E-4 0.0 0.012107871 0.005503577 0.0 7.338103E-4 0.01064025 0.057053752 0.0029352412 0.0027517886 0.043661714 0.016143827 9.1726286E-4 0.0014676206 0.018345257 0.020363236 1.8345258E-4 0.0016510732 0.020179784 0.014125848 0.002201431 0.0016510732 0.024399193 0.0 0.002201431 0.0 0.02990277 0.017978353 7.338103E-4 7.338103E-4 0.03412218 0.0 0.001284168 0.008622271 0.012474775 0.07539901 0.002568336 0.0075215558 0.055402678 0.2 0 255 0 Iteration 4 First 16 genes (3%) aaa:0.119 aac:0.007 aag:0.005 aat:0.076 aca:0.020 acc:0.000 acg:0.000 act:0.018 aga:0.018 agc:0.000 agg:0.001 agt:0.014 ata:0.047 atc:0.003 atg:0.012 att:0.074 caa:0.028 cac:0.001 cag:0.006 cat:0.021 cca:0.013 ccc:0.000 ccg:0.001 cct:0.010 cga:0.002 cgc:0.000 cgg:0.000 cgt:0.015 cta:0.006 ctc:0.000 ctg:0.001 ctt:0.010 gaa:0.059 gac:0.004 gag:0.002 gat:0.049 gca:0.013 gcc:0.001 gcg:0.001 gct:0.015 gga:0.018 ggc:0.000 ggg:0.002 ggt:0.017 gta:0.012 gtc:0.000 gtg:0.001 gtt:0.022 taa:0.000 tac:0.001 tag:0.000 tat:0.029 tca:0.023 tcc:0.000 tcg:0.000 tct:0.034 tga:0.000 tgc:0.002 tgg:0.006 tgt:0.009 tta:0.078 ttc:0.003 ttg:0.006 ttt:0.062 CodonUsageIt4 sphere 0.11935059 0.007459412 0.0048266784 0.07591049 0.019745503 4.3878893E-4 4.3878893E-4 0.018429136 0.017551558 4.3878893E-4 8.7757787E-4 0.014041246 0.047389206 0.0026327337 0.011847301 0.07371654 0.028082492 0.0013163668 0.006143045 0.02106187 0.013163668 0.0 0.0013163668 0.010092146 0.0017551557 4.3878893E-4 0.0 0.015357613 0.006143045 0.0 8.7757787E-4 0.010092146 0.058797717 0.0035103115 0.0017551557 0.04914436 0.013163668 8.7757787E-4 0.0013163668 0.015357613 0.018429136 4.3878893E-4 0.0017551557 0.01667398 0.011847301 4.3878893E-4 8.7757787E-4 0.022378236 0.0 0.0013163668 0.0 0.029398859 0.023255814 0.0 4.3878893E-4 0.033786748 0.0 0.0017551557 0.0057042562 0.008775779 0.07766564 0.0026327337 0.0057042562 0.06186924 0.2 0 255 0 Iteration 5 First 5 genes (1%) aaa:0.147 aac:0.003 aag:0.006 aat:0.070 aca:0.021 acc:0.002 acg:0.000 act:0.022 aga:0.021 agc:0.000 agg:0.000 agt:0.014 ata:0.051 atc:0.003 atg:0.014 att:0.065 caa:0.027 cac:0.002 cag:0.005 cat:0.024 cca:0.011 ccc:0.000 ccg:0.000 cct:0.011 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.017 cta:0.006 ctc:0.000 ctg:0.002 ctt:0.014 gaa:0.049 gac:0.006 gag:0.000 gat:0.044 gca:0.014 gcc:0.002 gcg:0.000 gct:0.014 gga:0.011 ggc:0.000 ggg:0.002 ggt:0.019 gta:0.003 gtc:0.000 gtg:0.000 gtt:0.017 taa:0.000 tac:0.000 tag:0.000 tat:0.035 tca:0.021 tcc:0.000 tcg:0.000 tct:0.025 tga:0.000 tgc:0.000 tgg:0.006 tgt:0.006 tta:0.085 ttc:0.002 ttg:0.003 ttt:0.078 CodonUsageIt5 sphere 0.1471519 0.003164557 0.006329114 0.06962025 0.02056962 0.0015822785 0.0 0.022151899 0.02056962 0.0 0.0 0.014240506 0.050632913 0.003164557 0.014240506 0.06487342 0.026898734 0.0015822785 0.004746835 0.023734177 0.011075949 0.0 0.0 0.011075949 0.0 0.0 0.0 0.017405063 0.006329114 0.0 0.0015822785 0.014240506 0.049050633 0.006329114 0.0 0.044303797 0.014240506 0.0015822785 0.0 0.014240506 0.011075949 0.0 0.0015822785 0.01898734 0.003164557 0.0 0.0 0.017405063 0.0 0.0 0.0 0.034810126 0.02056962 0.0 0.0 0.025316456 0.0 0.0 0.006329114 0.006329114 0.085443035 0.0015822785 0.003164557 0.07753164 0.2 0 255 0 Iteration 6 First 5 genes (1%) aaa:0.147 aac:0.003 aag:0.006 aat:0.070 aca:0.021 acc:0.002 acg:0.000 act:0.022 aga:0.021 agc:0.000 agg:0.000 agt:0.014 ata:0.051 atc:0.003 atg:0.014 att:0.065 caa:0.027 cac:0.002 cag:0.005 cat:0.024 cca:0.011 ccc:0.000 ccg:0.000 cct:0.011 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.017 cta:0.006 ctc:0.000 ctg:0.002 ctt:0.014 gaa:0.049 gac:0.006 gag:0.000 gat:0.044 gca:0.014 gcc:0.002 gcg:0.000 gct:0.014 gga:0.011 ggc:0.000 ggg:0.002 ggt:0.019 gta:0.003 gtc:0.000 gtg:0.000 gtt:0.017 taa:0.000 tac:0.000 tag:0.000 tat:0.035 tca:0.021 tcc:0.000 tcg:0.000 tct:0.025 tga:0.000 tgc:0.000 tgg:0.006 tgt:0.006 tta:0.085 ttc:0.002 ttg:0.003 ttt:0.078 CodonUsageIt6 sphere 0.1471519 0.003164557 0.006329114 0.06962025 0.02056962 0.0015822785 0.0 0.022151899 0.02056962 0.0 0.0 0.014240506 0.050632913 0.003164557 0.014240506 0.06487342 0.026898734 0.0015822785 0.004746835 0.023734177 0.011075949 0.0 0.0 0.011075949 0.0 0.0 0.0 0.017405063 0.006329114 0.0 0.0015822785 0.014240506 0.049050633 0.006329114 0.0 0.044303797 0.014240506 0.0015822785 0.0 0.014240506 0.011075949 0.0 0.0015822785 0.01898734 0.003164557 0.0 0.0 0.017405063 0.0 0.0 0.0 0.034810126 0.02056962 0.0 0.0 0.025316456 0.0 0.0 0.006329114 0.006329114 0.085443035 0.0015822785 0.003164557 0.07753164 0.2 0 255 0 Iteration 7 First 5 genes (1%) aaa:0.147 aac:0.003 aag:0.006 aat:0.070 aca:0.021 acc:0.002 acg:0.000 act:0.022 aga:0.021 agc:0.000 agg:0.000 agt:0.014 ata:0.051 atc:0.003 atg:0.014 att:0.065 caa:0.027 cac:0.002 cag:0.005 cat:0.024 cca:0.011 ccc:0.000 ccg:0.000 cct:0.011 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.017 cta:0.006 ctc:0.000 ctg:0.002 ctt:0.014 gaa:0.049 gac:0.006 gag:0.000 gat:0.044 gca:0.014 gcc:0.002 gcg:0.000 gct:0.014 gga:0.011 ggc:0.000 ggg:0.002 ggt:0.019 gta:0.003 gtc:0.000 gtg:0.000 gtt:0.017 taa:0.000 tac:0.000 tag:0.000 tat:0.035 tca:0.021 tcc:0.000 tcg:0.000 tct:0.025 tga:0.000 tgc:0.000 tgg:0.006 tgt:0.006 tta:0.085 ttc:0.002 ttg:0.003 ttt:0.078 CodonUsageIt7 sphere 0.1471519 0.003164557 0.006329114 0.06962025 0.02056962 0.0015822785 0.0 0.022151899 0.02056962 0.0 0.0 0.014240506 0.050632913 0.003164557 0.014240506 0.06487342 0.026898734 0.0015822785 0.004746835 0.023734177 0.011075949 0.0 0.0 0.011075949 0.0 0.0 0.0 0.017405063 0.006329114 0.0 0.0015822785 0.014240506 0.049050633 0.006329114 0.0 0.044303797 0.014240506 0.0015822785 0.0 0.014240506 0.011075949 0.0 0.0015822785 0.01898734 0.003164557 0.0 0.0 0.017405063 0.0 0.0 0.0 0.034810126 0.02056962 0.0 0.0 0.025316456 0.0 0.0 0.006329114 0.006329114 0.085443035 0.0015822785 0.003164557 0.07753164 0.2 0 255 0 Iteration 8 First 5 genes (1%) aaa:0.147 aac:0.003 aag:0.006 aat:0.070 aca:0.021 acc:0.002 acg:0.000 act:0.022 aga:0.021 agc:0.000 agg:0.000 agt:0.014 ata:0.051 atc:0.003 atg:0.014 att:0.065 caa:0.027 cac:0.002 cag:0.005 cat:0.024 cca:0.011 ccc:0.000 ccg:0.000 cct:0.011 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.017 cta:0.006 ctc:0.000 ctg:0.002 ctt:0.014 gaa:0.049 gac:0.006 gag:0.000 gat:0.044 gca:0.014 gcc:0.002 gcg:0.000 gct:0.014 gga:0.011 ggc:0.000 ggg:0.002 ggt:0.019 gta:0.003 gtc:0.000 gtg:0.000 gtt:0.017 taa:0.000 tac:0.000 tag:0.000 tat:0.035 tca:0.021 tcc:0.000 tcg:0.000 tct:0.025 tga:0.000 tgc:0.000 tgg:0.006 tgt:0.006 tta:0.085 ttc:0.002 ttg:0.003 ttt:0.078 CodonUsageIt8 sphere 0.1471519 0.003164557 0.006329114 0.06962025 0.02056962 0.0015822785 0.0 0.022151899 0.02056962 0.0 0.0 0.014240506 0.050632913 0.003164557 0.014240506 0.06487342 0.026898734 0.0015822785 0.004746835 0.023734177 0.011075949 0.0 0.0 0.011075949 0.0 0.0 0.0 0.017405063 0.006329114 0.0 0.0015822785 0.014240506 0.049050633 0.006329114 0.0 0.044303797 0.014240506 0.0015822785 0.0 0.014240506 0.011075949 0.0 0.0015822785 0.01898734 0.003164557 0.0 0.0 0.017405063 0.0 0.0 0.0 0.034810126 0.02056962 0.0 0.0 0.025316456 0.0 0.0 0.006329114 0.006329114 0.085443035 0.0015822785 0.003164557 0.07753164 0.2 0 255 0 Iteration 9 First 5 genes (1%) aaa:0.147 aac:0.003 aag:0.006 aat:0.070 aca:0.021 acc:0.002 acg:0.000 act:0.022 aga:0.021 agc:0.000 agg:0.000 agt:0.014 ata:0.051 atc:0.003 atg:0.014 att:0.065 caa:0.027 cac:0.002 cag:0.005 cat:0.024 cca:0.011 ccc:0.000 ccg:0.000 cct:0.011 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.017 cta:0.006 ctc:0.000 ctg:0.002 ctt:0.014 gaa:0.049 gac:0.006 gag:0.000 gat:0.044 gca:0.014 gcc:0.002 gcg:0.000 gct:0.014 gga:0.011 ggc:0.000 ggg:0.002 ggt:0.019 gta:0.003 gtc:0.000 gtg:0.000 gtt:0.017 taa:0.000 tac:0.000 tag:0.000 tat:0.035 tca:0.021 tcc:0.000 tcg:0.000 tct:0.025 tga:0.000 tgc:0.000 tgg:0.006 tgt:0.006 tta:0.085 ttc:0.002 ttg:0.003 ttt:0.078 CodonUsageIt9 sphere 0.1471519 0.003164557 0.006329114 0.06962025 0.02056962 0.0015822785 0.0 0.022151899 0.02056962 0.0 0.0 0.014240506 0.050632913 0.003164557 0.014240506 0.06487342 0.026898734 0.0015822785 0.004746835 0.023734177 0.011075949 0.0 0.0 0.011075949 0.0 0.0 0.0 0.017405063 0.006329114 0.0 0.0015822785 0.014240506 0.049050633 0.006329114 0.0 0.044303797 0.014240506 0.0015822785 0.0 0.014240506 0.011075949 0.0 0.0015822785 0.01898734 0.003164557 0.0 0.0 0.017405063 0.0 0.0 0.0 0.034810126 0.02056962 0.0 0.0 0.025316456 0.0 0.0 0.006329114 0.006329114 0.085443035 0.0015822785 0.003164557 0.07753164 0.2 0 255 0 Iteration 10 First 5 genes (1%) aaa:0.147 aac:0.003 aag:0.006 aat:0.070 aca:0.021 acc:0.002 acg:0.000 act:0.022 aga:0.021 agc:0.000 agg:0.000 agt:0.014 ata:0.051 atc:0.003 atg:0.014 att:0.065 caa:0.027 cac:0.002 cag:0.005 cat:0.024 cca:0.011 ccc:0.000 ccg:0.000 cct:0.011 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.017 cta:0.006 ctc:0.000 ctg:0.002 ctt:0.014 gaa:0.049 gac:0.006 gag:0.000 gat:0.044 gca:0.014 gcc:0.002 gcg:0.000 gct:0.014 gga:0.011 ggc:0.000 ggg:0.002 ggt:0.019 gta:0.003 gtc:0.000 gtg:0.000 gtt:0.017 taa:0.000 tac:0.000 tag:0.000 tat:0.035 tca:0.021 tcc:0.000 tcg:0.000 tct:0.025 tga:0.000 tgc:0.000 tgg:0.006 tgt:0.006 tta:0.085 ttc:0.002 ttg:0.003 ttt:0.078 CodonUsageIt10 sphere 0.1471519 0.003164557 0.006329114 0.06962025 0.02056962 0.0015822785 0.0 0.022151899 0.02056962 0.0 0.0 0.014240506 0.050632913 0.003164557 0.014240506 0.06487342 0.026898734 0.0015822785 0.004746835 0.023734177 0.011075949 0.0 0.0 0.011075949 0.0 0.0 0.0 0.017405063 0.006329114 0.0 0.0015822785 0.014240506 0.049050633 0.006329114 0.0 0.044303797 0.014240506 0.0015822785 0.0 0.014240506 0.011075949 0.0 0.0015822785 0.01898734 0.003164557 0.0 0.0 0.017405063 0.0 0.0 0.0 0.034810126 0.02056962 0.0 0.0 0.025316456 0.0 0.0 0.006329114 0.006329114 0.085443035 0.0015822785 0.003164557 0.07753164 0.2 0 255 0 Iteration 11 First 5 genes (1%) aaa:0.147 aac:0.003 aag:0.006 aat:0.070 aca:0.021 acc:0.002 acg:0.000 act:0.022 aga:0.021 agc:0.000 agg:0.000 agt:0.014 ata:0.051 atc:0.003 atg:0.014 att:0.065 caa:0.027 cac:0.002 cag:0.005 cat:0.024 cca:0.011 ccc:0.000 ccg:0.000 cct:0.011 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.017 cta:0.006 ctc:0.000 ctg:0.002 ctt:0.014 gaa:0.049 gac:0.006 gag:0.000 gat:0.044 gca:0.014 gcc:0.002 gcg:0.000 gct:0.014 gga:0.011 ggc:0.000 ggg:0.002 ggt:0.019 gta:0.003 gtc:0.000 gtg:0.000 gtt:0.017 taa:0.000 tac:0.000 tag:0.000 tat:0.035 tca:0.021 tcc:0.000 tcg:0.000 tct:0.025 tga:0.000 tgc:0.000 tgg:0.006 tgt:0.006 tta:0.085 ttc:0.002 ttg:0.003 ttt:0.078 CodonUsageIt11 sphere 0.1471519 0.003164557 0.006329114 0.06962025 0.02056962 0.0015822785 0.0 0.022151899 0.02056962 0.0 0.0 0.014240506 0.050632913 0.003164557 0.014240506 0.06487342 0.026898734 0.0015822785 0.004746835 0.023734177 0.011075949 0.0 0.0 0.011075949 0.0 0.0 0.0 0.017405063 0.006329114 0.0 0.0015822785 0.014240506 0.049050633 0.006329114 0.0 0.044303797 0.014240506 0.0015822785 0.0 0.014240506 0.011075949 0.0 0.0015822785 0.01898734 0.003164557 0.0 0.0 0.017405063 0.0 0.0 0.0 0.034810126 0.02056962 0.0 0.0 0.025316456 0.0 0.0 0.006329114 0.006329114 0.085443035 0.0015822785 0.003164557 0.07753164 0.2 0 255 0 Iteration 12 First 5 genes (1%) aaa:0.147 aac:0.003 aag:0.006 aat:0.070 aca:0.021 acc:0.002 acg:0.000 act:0.022 aga:0.021 agc:0.000 agg:0.000 agt:0.014 ata:0.051 atc:0.003 atg:0.014 att:0.065 caa:0.027 cac:0.002 cag:0.005 cat:0.024 cca:0.011 ccc:0.000 ccg:0.000 cct:0.011 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.017 cta:0.006 ctc:0.000 ctg:0.002 ctt:0.014 gaa:0.049 gac:0.006 gag:0.000 gat:0.044 gca:0.014 gcc:0.002 gcg:0.000 gct:0.014 gga:0.011 ggc:0.000 ggg:0.002 ggt:0.019 gta:0.003 gtc:0.000 gtg:0.000 gtt:0.017 taa:0.000 tac:0.000 tag:0.000 tat:0.035 tca:0.021 tcc:0.000 tcg:0.000 tct:0.025 tga:0.000 tgc:0.000 tgg:0.006 tgt:0.006 tta:0.085 ttc:0.002 ttg:0.003 ttt:0.078 CodonUsageIt12 sphere 0.1471519 0.003164557 0.006329114 0.06962025 0.02056962 0.0015822785 0.0 0.022151899 0.02056962 0.0 0.0 0.014240506 0.050632913 0.003164557 0.014240506 0.06487342 0.026898734 0.0015822785 0.004746835 0.023734177 0.011075949 0.0 0.0 0.011075949 0.0 0.0 0.0 0.017405063 0.006329114 0.0 0.0015822785 0.014240506 0.049050633 0.006329114 0.0 0.044303797 0.014240506 0.0015822785 0.0 0.014240506 0.011075949 0.0 0.0015822785 0.01898734 0.003164557 0.0 0.0 0.017405063 0.0 0.0 0.0 0.034810126 0.02056962 0.0 0.0 0.025316456 0.0 0.0 0.006329114 0.006329114 0.085443035 0.0015822785 0.003164557 0.07753164 0.2 0 255 0 Iteration 13 First 5 genes (1%) aaa:0.147 aac:0.003 aag:0.006 aat:0.070 aca:0.021 acc:0.002 acg:0.000 act:0.022 aga:0.021 agc:0.000 agg:0.000 agt:0.014 ata:0.051 atc:0.003 atg:0.014 att:0.065 caa:0.027 cac:0.002 cag:0.005 cat:0.024 cca:0.011 ccc:0.000 ccg:0.000 cct:0.011 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.017 cta:0.006 ctc:0.000 ctg:0.002 ctt:0.014 gaa:0.049 gac:0.006 gag:0.000 gat:0.044 gca:0.014 gcc:0.002 gcg:0.000 gct:0.014 gga:0.011 ggc:0.000 ggg:0.002 ggt:0.019 gta:0.003 gtc:0.000 gtg:0.000 gtt:0.017 taa:0.000 tac:0.000 tag:0.000 tat:0.035 tca:0.021 tcc:0.000 tcg:0.000 tct:0.025 tga:0.000 tgc:0.000 tgg:0.006 tgt:0.006 tta:0.085 ttc:0.002 ttg:0.003 ttt:0.078 CodonUsageIt13 sphere 0.1471519 0.003164557 0.006329114 0.06962025 0.02056962 0.0015822785 0.0 0.022151899 0.02056962 0.0 0.0 0.014240506 0.050632913 0.003164557 0.014240506 0.06487342 0.026898734 0.0015822785 0.004746835 0.023734177 0.011075949 0.0 0.0 0.011075949 0.0 0.0 0.0 0.017405063 0.006329114 0.0 0.0015822785 0.014240506 0.049050633 0.006329114 0.0 0.044303797 0.014240506 0.0015822785 0.0 0.014240506 0.011075949 0.0 0.0015822785 0.01898734 0.003164557 0.0 0.0 0.017405063 0.0 0.0 0.0 0.034810126 0.02056962 0.0 0.0 0.025316456 0.0 0.0 0.006329114 0.006329114 0.085443035 0.0015822785 0.003164557 0.07753164 0.2 0 255 0 Iteration 14 First 5 genes (1%) aaa:0.147 aac:0.003 aag:0.006 aat:0.070 aca:0.021 acc:0.002 acg:0.000 act:0.022 aga:0.021 agc:0.000 agg:0.000 agt:0.014 ata:0.051 atc:0.003 atg:0.014 att:0.065 caa:0.027 cac:0.002 cag:0.005 cat:0.024 cca:0.011 ccc:0.000 ccg:0.000 cct:0.011 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.017 cta:0.006 ctc:0.000 ctg:0.002 ctt:0.014 gaa:0.049 gac:0.006 gag:0.000 gat:0.044 gca:0.014 gcc:0.002 gcg:0.000 gct:0.014 gga:0.011 ggc:0.000 ggg:0.002 ggt:0.019 gta:0.003 gtc:0.000 gtg:0.000 gtt:0.017 taa:0.000 tac:0.000 tag:0.000 tat:0.035 tca:0.021 tcc:0.000 tcg:0.000 tct:0.025 tga:0.000 tgc:0.000 tgg:0.006 tgt:0.006 tta:0.085 ttc:0.002 ttg:0.003 ttt:0.078 CodonUsageIt14 sphere 0.1471519 0.003164557 0.006329114 0.06962025 0.02056962 0.0015822785 0.0 0.022151899 0.02056962 0.0 0.0 0.014240506 0.050632913 0.003164557 0.014240506 0.06487342 0.026898734 0.0015822785 0.004746835 0.023734177 0.011075949 0.0 0.0 0.011075949 0.0 0.0 0.0 0.017405063 0.006329114 0.0 0.0015822785 0.014240506 0.049050633 0.006329114 0.0 0.044303797 0.014240506 0.0015822785 0.0 0.014240506 0.011075949 0.0 0.0015822785 0.01898734 0.003164557 0.0 0.0 0.017405063 0.0 0.0 0.0 0.034810126 0.02056962 0.0 0.0 0.025316456 0.0 0.0 0.006329114 0.006329114 0.085443035 0.0015822785 0.003164557 0.07753164 0.2 0 255 0 aaa:1.000 aac:0.045 aag:0.043 aat:1.000 aca:0.929 acc:0.071 acg:0.000 act:1.000 aga:1.000 agc:0.000 agg:0.000 agt:0.562 ata:0.780 atc:0.049 atg:1.000 att:1.000 caa:1.000 cac:0.067 cag:0.176 cat:1.000 cca:1.000 ccc:0.000 ccg:0.000 cct:1.000 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.846 cta:0.074 ctc:0.000 ctg:0.019 ctt:0.167 gaa:1.000 gac:0.143 gag:0.000 gat:1.000 gca:1.000 gcc:0.111 gcg:0.000 gct:1.000 gga:0.583 ggc:0.000 ggg:0.083 ggt:1.000 gta:0.182 gtc:0.000 gtg:0.000 gtt:1.000 taa:0.000 tac:0.000 tag:0.000 tat:1.000 tca:0.812 tcc:0.000 tcg:0.000 tct:1.000 tga:0.000 tgc:0.000 tgg:1.000 tgt:1.000 tta:1.000 ttc:0.020 ttg:0.037 ttt:1.000 ttt:1.000 ttc:0.020 ttg:0.037 tta:1.000 tct:1.000 tcc:0.000 tcg:0.000 tca:0.812 tgt:1.000 tgc:0.000 tgg:1.000 tga:0.000 tat:1.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.167 ctc:0.000 ctg:0.019 cta:0.074 cct:1.000 ccc:0.000 ccg:0.000 cca:1.000 cgt:0.846 cgc:0.000 cgg:0.000 cga:0.000 cat:1.000 cac:0.067 cag:0.176 caa:1.000 gtt:1.000 gtc:0.000 gtg:0.000 gta:0.182 gct:1.000 gcc:0.111 gcg:0.000 gca:1.000 ggt:1.000 ggc:0.000 ggg:0.083 gga:0.583 gat:1.000 gac:0.143 gag:0.000 gaa:1.000 att:1.000 atc:0.049 atg:1.000 ata:0.780 act:1.000 acc:0.071 acg:0.000 aca:0.929 agt:0.562 agc:0.000 agg:0.000 aga:1.000 aat:1.000 aac:0.045 aag:0.043 aaa:1.000 // 0 - CAICLASS // 1 - STRAND // 2 - GC_CONT // 3 - GC_CONT3 // 4 - GC_SKEW // 5 - AT_SKEW // 6 - GENELENGTH // 7 - CAIEXT --- 0.048791543 -0.4468523 -0.760518 -0.038028017 -0.0017915707 0.05560801 NaN