AdditionalInfoFile = "" ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 Looking for randomclass.txt... Loading sequence... Loaded... Getting seq... Got NC_002252 3 CDS features found Getting seq... Got NC_002253 7 CDS features found Getting seq... Got NC_002528 564 CDS features found CodonUsage sphere 0.09104077 0.009952924 0.008083756 0.06196481 0.019612959 0.0029342223 0.0024123462 0.020805819 0.015816044 0.0031898352 0.0011289567 0.014979977 0.042761896 0.009516253 0.018739616 0.06353044 0.0278831 0.0026945854 0.0042176116 0.018510628 0.011433349 0.0021567333 0.0022632387 0.014271717 0.0060228775 0.0018212415 5.4317724E-4 0.0127167385 0.009218038 0.0017040855 0.0019756742 0.012035104 0.050281174 0.005160184 0.005021727 0.038192816 0.019272143 0.0028010907 0.003051378 0.019687513 0.024176713 0.004164359 0.003424147 0.022690965 0.019575683 0.003408171 0.00388212 0.021902824 1.0650535E-5 0.0048513184 0.0 0.0313818 0.018095259 0.0030354024 0.0025028756 0.031126188 0.0 0.002188685 0.009090232 0.009995527 0.06418012 0.0043560686 0.010315043 0.046239298 0.4 255 0 0 aaa:0.091 aac:0.010 aag:0.008 aat:0.062 aca:0.020 acc:0.003 acg:0.002 act:0.021 aga:0.016 agc:0.003 agg:0.001 agt:0.015 ata:0.043 atc:0.010 atg:0.019 att:0.064 caa:0.028 cac:0.003 cag:0.004 cat:0.019 cca:0.011 ccc:0.002 ccg:0.002 cct:0.014 cga:0.006 cgc:0.002 cgg:0.001 cgt:0.013 cta:0.009 ctc:0.002 ctg:0.002 ctt:0.012 gaa:0.050 gac:0.005 gag:0.005 gat:0.038 gca:0.019 gcc:0.003 gcg:0.003 gct:0.020 gga:0.024 ggc:0.004 ggg:0.003 ggt:0.023 gta:0.020 gtc:0.003 gtg:0.004 gtt:0.022 taa:0.000 tac:0.005 tag:0.000 tat:0.031 tca:0.018 tcc:0.003 tcg:0.003 tct:0.031 tga:0.000 tgc:0.002 tgg:0.009 tgt:0.010 tta:0.064 ttc:0.004 ttg:0.010 ttt:0.046 Number of points = 574 Iteration 0 First 287 genes (50%) aaa:0.093 aac:0.009 aag:0.007 aat:0.064 aca:0.020 acc:0.003 acg:0.002 act:0.021 aga:0.016 agc:0.003 agg:0.001 agt:0.014 ata:0.042 atc:0.008 atg:0.019 att:0.064 caa:0.028 cac:0.002 cag:0.004 cat:0.019 cca:0.012 ccc:0.002 ccg:0.002 cct:0.015 cga:0.006 cgc:0.002 cgg:0.001 cgt:0.014 cta:0.008 ctc:0.001 ctg:0.002 ctt:0.011 gaa:0.052 gac:0.005 gag:0.005 gat:0.040 gca:0.020 gcc:0.002 gcg:0.003 gct:0.021 gga:0.024 ggc:0.004 ggg:0.003 ggt:0.024 gta:0.020 gtc:0.003 gtg:0.004 gtt:0.022 taa:0.000 tac:0.004 tag:0.000 tat:0.032 tca:0.018 tcc:0.003 tcg:0.002 tct:0.032 tga:0.000 tgc:0.002 tgg:0.009 tgt:0.010 tta:0.064 ttc:0.004 ttg:0.010 ttt:0.047 CodonUsageIt0 sphere 0.09288762 0.008667077 0.0069951573 0.063859634 0.019544162 0.0027192712 0.0022484434 0.020793296 0.015652625 0.0026616189 0.0010953955 0.0141632715 0.041903682 0.008388423 0.01894842 0.0641479 0.028384196 0.0022003998 0.003987624 0.018881159 0.011693828 0.0020178338 0.0020370514 0.014768622 0.005976632 0.0015950496 5.284803E-4 0.013673226 0.008177031 0.0013260051 0.0015277885 0.010896303 0.05192559 0.00469867 0.0046890615 0.040193327 0.019774772 0.0024117918 0.0026327926 0.020658774 0.023858482 0.003699362 0.0030459682 0.023579828 0.020456992 0.0030459682 0.0036801444 0.022311477 0.0 0.004487278 0.0 0.03190099 0.017795373 0.0026327926 0.002085095 0.032045122 0.0 0.0020562687 0.0090322085 0.010127604 0.06435929 0.0037858405 0.009599124 0.04708279 0.2 0 255 0 Iteration 1 First 143 genes (25%) aaa:0.095 aac:0.008 aag:0.007 aat:0.066 aca:0.020 acc:0.002 acg:0.002 act:0.022 aga:0.015 agc:0.002 agg:0.001 agt:0.014 ata:0.042 atc:0.008 atg:0.018 att:0.066 caa:0.028 cac:0.002 cag:0.003 cat:0.020 cca:0.012 ccc:0.002 ccg:0.002 cct:0.015 cga:0.006 cgc:0.001 cgg:0.000 cgt:0.013 cta:0.007 ctc:0.001 ctg:0.001 ctt:0.010 gaa:0.051 gac:0.004 gag:0.004 gat:0.041 gca:0.018 gcc:0.002 gcg:0.002 gct:0.020 gga:0.024 ggc:0.004 ggg:0.003 ggt:0.024 gta:0.021 gtc:0.003 gtg:0.003 gtt:0.023 taa:0.000 tac:0.004 tag:0.000 tat:0.033 tca:0.017 tcc:0.002 tcg:0.002 tct:0.032 tga:0.000 tgc:0.002 tgg:0.009 tgt:0.010 tta:0.066 ttc:0.004 ttg:0.009 ttt:0.049 CodonUsageIt1 sphere 0.09532852 0.008350415 0.0066026542 0.06563815 0.019678498 0.0023303484 0.0019851117 0.021771496 0.014974646 0.0023303484 0.001143597 0.014413637 0.042485707 0.008026755 0.017758118 0.06619916 0.028482037 0.0018340705 0.0034739454 0.020261085 0.01167332 0.0016398749 0.001790916 0.014737296 0.00567483 0.0014241019 4.5312333E-4 0.013442658 0.0071420865 0.0010357104 0.0012730607 0.009666631 0.05083612 0.004250728 0.0043370374 0.041126337 0.018427014 0.0020498435 0.0020498435 0.020174775 0.023799762 0.0035386772 0.002589276 0.024037113 0.020929981 0.0027403173 0.0034955228 0.023325061 0.0 0.004034955 0.0 0.03266803 0.017024491 0.0024598122 0.0019635344 0.03204229 0.0 0.0018340705 0.009429281 0.010335527 0.06622074 0.0035386772 0.008911425 0.048807856 0.2 0 255 0 Iteration 2 First 68 genes (12%) aaa:0.099 aac:0.008 aag:0.007 aat:0.064 aca:0.021 acc:0.002 acg:0.002 act:0.024 aga:0.015 agc:0.002 agg:0.001 agt:0.014 ata:0.040 atc:0.008 atg:0.019 att:0.066 caa:0.026 cac:0.001 cag:0.003 cat:0.019 cca:0.012 ccc:0.002 ccg:0.002 cct:0.015 cga:0.006 cgc:0.001 cgg:0.000 cgt:0.015 cta:0.007 ctc:0.001 ctg:0.001 ctt:0.010 gaa:0.051 gac:0.004 gag:0.004 gat:0.042 gca:0.021 gcc:0.002 gcg:0.002 gct:0.020 gga:0.024 ggc:0.003 ggg:0.002 ggt:0.028 gta:0.023 gtc:0.003 gtg:0.003 gtt:0.025 taa:0.000 tac:0.003 tag:0.000 tat:0.030 tca:0.017 tcc:0.002 tcg:0.001 tct:0.033 tga:0.000 tgc:0.001 tgg:0.008 tgt:0.011 tta:0.067 ttc:0.003 ttg:0.008 ttt:0.046 CodonUsageIt2 sphere 0.099066064 0.0075058728 0.0069902022 0.063828565 0.02142898 0.0016616054 0.0017189021 0.02354896 0.014839856 0.002005386 8.594511E-4 0.014266889 0.040336903 0.0075631696 0.019079814 0.066464216 0.02584083 0.0014324185 0.0030367272 0.019480892 0.012089612 0.0016043087 0.0016043087 0.014839856 0.0057869707 0.001317825 2.2918696E-4 0.015126339 0.0071620923 6.875609E-4 0.0012032315 0.009683149 0.050936803 0.003953475 0.0037815848 0.042284995 0.020684123 0.0021199794 0.0018907924 0.020340342 0.024351114 0.0032659143 0.0023491664 0.027674325 0.022632211 0.002864837 0.0029794304 0.025095971 0.0 0.0033232109 0.0 0.029565118 0.016730648 0.001776199 0.0014324185 0.03300292 0.0 0.0014324185 0.008422621 0.010771787 0.06663611 0.0029221338 0.008308027 0.046181172 0.2 0 255 0 Iteration 3 First 34 genes (6%) aaa:0.104 aac:0.007 aag:0.006 aat:0.064 aca:0.022 acc:0.002 acg:0.001 act:0.024 aga:0.014 agc:0.002 agg:0.001 agt:0.014 ata:0.036 atc:0.007 atg:0.018 att:0.066 caa:0.026 cac:0.001 cag:0.002 cat:0.019 cca:0.013 ccc:0.001 ccg:0.001 cct:0.015 cga:0.006 cgc:0.001 cgg:0.000 cgt:0.018 cta:0.008 ctc:0.001 ctg:0.002 ctt:0.010 gaa:0.054 gac:0.004 gag:0.003 gat:0.039 gca:0.024 gcc:0.002 gcg:0.002 gct:0.021 gga:0.026 ggc:0.003 ggg:0.002 ggt:0.029 gta:0.021 gtc:0.002 gtg:0.003 gtt:0.024 taa:0.000 tac:0.003 tag:0.000 tat:0.030 tca:0.016 tcc:0.001 tcg:0.001 tct:0.035 tga:0.000 tgc:0.002 tgg:0.006 tgt:0.012 tta:0.068 ttc:0.002 ttg:0.008 ttt:0.045 CodonUsageIt3 sphere 0.10388757 0.0069608614 0.0057788286 0.064486474 0.021539269 0.0015760441 0.0014447072 0.024034673 0.013527712 0.0017073811 0.0010506961 0.013790386 0.03598634 0.0068295244 0.018255845 0.06632519 0.025873391 0.0014447072 0.0023640662 0.019175204 0.012608353 7.8802207E-4 0.0013133701 0.015235093 0.0063041765 0.0013133701 1.3133702E-4 0.017730497 0.008405569 5.2534806E-4 0.0015760441 0.009718939 0.0535855 0.0038087734 0.0032834252 0.038875755 0.024428684 0.0023640662 0.0021013923 0.020751247 0.025873391 0.0030207513 0.0023640662 0.028500132 0.021145258 0.0023640662 0.002758077 0.023640662 0.0 0.0026267401 0.0 0.030076176 0.01589178 0.0010506961 0.0010506961 0.034935646 0.0 0.0018387182 0.0061728396 0.011688994 0.06842658 0.0024954032 0.008274232 0.04491726 0.2 0 255 0 Iteration 4 First 17 genes (3%) aaa:0.105 aac:0.006 aag:0.004 aat:0.062 aca:0.019 acc:0.002 acg:0.002 act:0.025 aga:0.013 agc:0.001 agg:0.000 agt:0.011 ata:0.034 atc:0.005 atg:0.019 att:0.065 caa:0.029 cac:0.001 cag:0.003 cat:0.019 cca:0.014 ccc:0.000 ccg:0.002 cct:0.016 cga:0.006 cgc:0.002 cgg:0.000 cgt:0.026 cta:0.008 ctc:0.000 ctg:0.002 ctt:0.009 gaa:0.060 gac:0.005 gag:0.003 gat:0.034 gca:0.030 gcc:0.002 gcg:0.002 gct:0.021 gga:0.025 ggc:0.003 ggg:0.003 ggt:0.030 gta:0.023 gtc:0.003 gtg:0.004 gtt:0.025 taa:0.000 tac:0.003 tag:0.000 tat:0.028 tca:0.013 tcc:0.001 tcg:0.000 tct:0.038 tga:0.000 tgc:0.002 tgg:0.006 tgt:0.010 tta:0.067 ttc:0.002 ttg:0.008 ttt:0.040 CodonUsageIt4 sphere 0.1045884 0.0060728746 0.003711201 0.06174089 0.01923077 0.0023616734 0.0016869096 0.024966262 0.012820513 0.0010121458 3.373819E-4 0.011470986 0.034075573 0.004723347 0.018893387 0.06511471 0.028677464 0.0013495276 0.0026990552 0.01923077 0.0138326585 3.373819E-4 0.0016869096 0.01585695 0.0060728746 0.0016869096 3.373819E-4 0.025978407 0.008434548 3.373819E-4 0.0016869096 0.00877193 0.06005398 0.004723347 0.0026990552 0.033738192 0.03002699 0.0016869096 0.0020242915 0.021255061 0.025303643 0.0026990552 0.0026990552 0.029689608 0.022941971 0.0030364373 0.003711201 0.025303643 0.0 0.0026990552 0.0 0.0280027 0.013495277 0.0010121458 3.373819E-4 0.037786774 0.0 0.0023616734 0.005735493 0.010121457 0.06680162 0.0023616734 0.008097166 0.039811067 0.2 0 255 0 Iteration 5 First 5 genes (1%) aaa:0.132 aac:0.000 aag:0.004 aat:0.058 aca:0.015 acc:0.001 acg:0.003 act:0.028 aga:0.014 agc:0.000 agg:0.001 agt:0.017 ata:0.043 atc:0.004 atg:0.006 att:0.082 caa:0.033 cac:0.000 cag:0.001 cat:0.011 cca:0.015 ccc:0.000 ccg:0.001 cct:0.021 cga:0.003 cgc:0.001 cgg:0.001 cgt:0.024 cta:0.004 ctc:0.000 ctg:0.000 ctt:0.011 gaa:0.051 gac:0.003 gag:0.003 gat:0.032 gca:0.026 gcc:0.001 gcg:0.003 gct:0.014 gga:0.018 ggc:0.003 ggg:0.003 ggt:0.028 gta:0.013 gtc:0.001 gtg:0.003 gtt:0.022 taa:0.000 tac:0.003 tag:0.000 tat:0.040 tca:0.015 tcc:0.001 tcg:0.000 tct:0.032 tga:0.000 tgc:0.004 tgg:0.003 tgt:0.011 tta:0.064 ttc:0.000 ttg:0.008 ttt:0.058 CodonUsageIt5 sphere 0.13194445 0.0 0.004166667 0.058333334 0.015277778 0.0013888889 0.0027777778 0.027777778 0.013888889 0.0 0.0013888889 0.016666668 0.043055557 0.004166667 0.0055555557 0.08194444 0.033333335 0.0 0.0013888889 0.011111111 0.015277778 0.0 0.0013888889 0.020833334 0.0027777778 0.0013888889 0.0013888889 0.023611112 0.004166667 0.0 0.0 0.011111111 0.05138889 0.0027777778 0.0027777778 0.031944446 0.02638889 0.0013888889 0.0027777778 0.013888889 0.018055556 0.0027777778 0.0027777778 0.027777778 0.0125 0.0013888889 0.0027777778 0.022222223 0.0 0.0027777778 0.0 0.04027778 0.015277778 0.0013888889 0.0 0.031944446 0.0 0.004166667 0.0027777778 0.011111111 0.06388889 0.0 0.008333334 0.058333334 0.2 0 255 0 Iteration 6 First 5 genes (1%) aaa:0.132 aac:0.000 aag:0.004 aat:0.058 aca:0.015 acc:0.001 acg:0.003 act:0.028 aga:0.014 agc:0.000 agg:0.001 agt:0.017 ata:0.043 atc:0.004 atg:0.006 att:0.082 caa:0.033 cac:0.000 cag:0.001 cat:0.011 cca:0.015 ccc:0.000 ccg:0.001 cct:0.021 cga:0.003 cgc:0.001 cgg:0.001 cgt:0.024 cta:0.004 ctc:0.000 ctg:0.000 ctt:0.011 gaa:0.051 gac:0.003 gag:0.003 gat:0.032 gca:0.026 gcc:0.001 gcg:0.003 gct:0.014 gga:0.018 ggc:0.003 ggg:0.003 ggt:0.028 gta:0.013 gtc:0.001 gtg:0.003 gtt:0.022 taa:0.000 tac:0.003 tag:0.000 tat:0.040 tca:0.015 tcc:0.001 tcg:0.000 tct:0.032 tga:0.000 tgc:0.004 tgg:0.003 tgt:0.011 tta:0.064 ttc:0.000 ttg:0.008 ttt:0.058 CodonUsageIt6 sphere 0.13194445 0.0 0.004166667 0.058333334 0.015277778 0.0013888889 0.0027777778 0.027777778 0.013888889 0.0 0.0013888889 0.016666668 0.043055557 0.004166667 0.0055555557 0.08194444 0.033333335 0.0 0.0013888889 0.011111111 0.015277778 0.0 0.0013888889 0.020833334 0.0027777778 0.0013888889 0.0013888889 0.023611112 0.004166667 0.0 0.0 0.011111111 0.05138889 0.0027777778 0.0027777778 0.031944446 0.02638889 0.0013888889 0.0027777778 0.013888889 0.018055556 0.0027777778 0.0027777778 0.027777778 0.0125 0.0013888889 0.0027777778 0.022222223 0.0 0.0027777778 0.0 0.04027778 0.015277778 0.0013888889 0.0 0.031944446 0.0 0.004166667 0.0027777778 0.011111111 0.06388889 0.0 0.008333334 0.058333334 0.2 0 255 0 Iteration 7 First 5 genes (1%) aaa:0.132 aac:0.000 aag:0.004 aat:0.058 aca:0.015 acc:0.001 acg:0.003 act:0.028 aga:0.014 agc:0.000 agg:0.001 agt:0.017 ata:0.043 atc:0.004 atg:0.006 att:0.082 caa:0.033 cac:0.000 cag:0.001 cat:0.011 cca:0.015 ccc:0.000 ccg:0.001 cct:0.021 cga:0.003 cgc:0.001 cgg:0.001 cgt:0.024 cta:0.004 ctc:0.000 ctg:0.000 ctt:0.011 gaa:0.051 gac:0.003 gag:0.003 gat:0.032 gca:0.026 gcc:0.001 gcg:0.003 gct:0.014 gga:0.018 ggc:0.003 ggg:0.003 ggt:0.028 gta:0.013 gtc:0.001 gtg:0.003 gtt:0.022 taa:0.000 tac:0.003 tag:0.000 tat:0.040 tca:0.015 tcc:0.001 tcg:0.000 tct:0.032 tga:0.000 tgc:0.004 tgg:0.003 tgt:0.011 tta:0.064 ttc:0.000 ttg:0.008 ttt:0.058 CodonUsageIt7 sphere 0.13194445 0.0 0.004166667 0.058333334 0.015277778 0.0013888889 0.0027777778 0.027777778 0.013888889 0.0 0.0013888889 0.016666668 0.043055557 0.004166667 0.0055555557 0.08194444 0.033333335 0.0 0.0013888889 0.011111111 0.015277778 0.0 0.0013888889 0.020833334 0.0027777778 0.0013888889 0.0013888889 0.023611112 0.004166667 0.0 0.0 0.011111111 0.05138889 0.0027777778 0.0027777778 0.031944446 0.02638889 0.0013888889 0.0027777778 0.013888889 0.018055556 0.0027777778 0.0027777778 0.027777778 0.0125 0.0013888889 0.0027777778 0.022222223 0.0 0.0027777778 0.0 0.04027778 0.015277778 0.0013888889 0.0 0.031944446 0.0 0.004166667 0.0027777778 0.011111111 0.06388889 0.0 0.008333334 0.058333334 0.2 0 255 0 Iteration 8 First 5 genes (1%) aaa:0.132 aac:0.000 aag:0.004 aat:0.058 aca:0.015 acc:0.001 acg:0.003 act:0.028 aga:0.014 agc:0.000 agg:0.001 agt:0.017 ata:0.043 atc:0.004 atg:0.006 att:0.082 caa:0.033 cac:0.000 cag:0.001 cat:0.011 cca:0.015 ccc:0.000 ccg:0.001 cct:0.021 cga:0.003 cgc:0.001 cgg:0.001 cgt:0.024 cta:0.004 ctc:0.000 ctg:0.000 ctt:0.011 gaa:0.051 gac:0.003 gag:0.003 gat:0.032 gca:0.026 gcc:0.001 gcg:0.003 gct:0.014 gga:0.018 ggc:0.003 ggg:0.003 ggt:0.028 gta:0.013 gtc:0.001 gtg:0.003 gtt:0.022 taa:0.000 tac:0.003 tag:0.000 tat:0.040 tca:0.015 tcc:0.001 tcg:0.000 tct:0.032 tga:0.000 tgc:0.004 tgg:0.003 tgt:0.011 tta:0.064 ttc:0.000 ttg:0.008 ttt:0.058 CodonUsageIt8 sphere 0.13194445 0.0 0.004166667 0.058333334 0.015277778 0.0013888889 0.0027777778 0.027777778 0.013888889 0.0 0.0013888889 0.016666668 0.043055557 0.004166667 0.0055555557 0.08194444 0.033333335 0.0 0.0013888889 0.011111111 0.015277778 0.0 0.0013888889 0.020833334 0.0027777778 0.0013888889 0.0013888889 0.023611112 0.004166667 0.0 0.0 0.011111111 0.05138889 0.0027777778 0.0027777778 0.031944446 0.02638889 0.0013888889 0.0027777778 0.013888889 0.018055556 0.0027777778 0.0027777778 0.027777778 0.0125 0.0013888889 0.0027777778 0.022222223 0.0 0.0027777778 0.0 0.04027778 0.015277778 0.0013888889 0.0 0.031944446 0.0 0.004166667 0.0027777778 0.011111111 0.06388889 0.0 0.008333334 0.058333334 0.2 0 255 0 Iteration 9 First 5 genes (1%) aaa:0.132 aac:0.000 aag:0.004 aat:0.058 aca:0.015 acc:0.001 acg:0.003 act:0.028 aga:0.014 agc:0.000 agg:0.001 agt:0.017 ata:0.043 atc:0.004 atg:0.006 att:0.082 caa:0.033 cac:0.000 cag:0.001 cat:0.011 cca:0.015 ccc:0.000 ccg:0.001 cct:0.021 cga:0.003 cgc:0.001 cgg:0.001 cgt:0.024 cta:0.004 ctc:0.000 ctg:0.000 ctt:0.011 gaa:0.051 gac:0.003 gag:0.003 gat:0.032 gca:0.026 gcc:0.001 gcg:0.003 gct:0.014 gga:0.018 ggc:0.003 ggg:0.003 ggt:0.028 gta:0.013 gtc:0.001 gtg:0.003 gtt:0.022 taa:0.000 tac:0.003 tag:0.000 tat:0.040 tca:0.015 tcc:0.001 tcg:0.000 tct:0.032 tga:0.000 tgc:0.004 tgg:0.003 tgt:0.011 tta:0.064 ttc:0.000 ttg:0.008 ttt:0.058 CodonUsageIt9 sphere 0.13194445 0.0 0.004166667 0.058333334 0.015277778 0.0013888889 0.0027777778 0.027777778 0.013888889 0.0 0.0013888889 0.016666668 0.043055557 0.004166667 0.0055555557 0.08194444 0.033333335 0.0 0.0013888889 0.011111111 0.015277778 0.0 0.0013888889 0.020833334 0.0027777778 0.0013888889 0.0013888889 0.023611112 0.004166667 0.0 0.0 0.011111111 0.05138889 0.0027777778 0.0027777778 0.031944446 0.02638889 0.0013888889 0.0027777778 0.013888889 0.018055556 0.0027777778 0.0027777778 0.027777778 0.0125 0.0013888889 0.0027777778 0.022222223 0.0 0.0027777778 0.0 0.04027778 0.015277778 0.0013888889 0.0 0.031944446 0.0 0.004166667 0.0027777778 0.011111111 0.06388889 0.0 0.008333334 0.058333334 0.2 0 255 0 Iteration 10 First 5 genes (1%) aaa:0.132 aac:0.000 aag:0.004 aat:0.058 aca:0.015 acc:0.001 acg:0.003 act:0.028 aga:0.014 agc:0.000 agg:0.001 agt:0.017 ata:0.043 atc:0.004 atg:0.006 att:0.082 caa:0.033 cac:0.000 cag:0.001 cat:0.011 cca:0.015 ccc:0.000 ccg:0.001 cct:0.021 cga:0.003 cgc:0.001 cgg:0.001 cgt:0.024 cta:0.004 ctc:0.000 ctg:0.000 ctt:0.011 gaa:0.051 gac:0.003 gag:0.003 gat:0.032 gca:0.026 gcc:0.001 gcg:0.003 gct:0.014 gga:0.018 ggc:0.003 ggg:0.003 ggt:0.028 gta:0.013 gtc:0.001 gtg:0.003 gtt:0.022 taa:0.000 tac:0.003 tag:0.000 tat:0.040 tca:0.015 tcc:0.001 tcg:0.000 tct:0.032 tga:0.000 tgc:0.004 tgg:0.003 tgt:0.011 tta:0.064 ttc:0.000 ttg:0.008 ttt:0.058 CodonUsageIt10 sphere 0.13194445 0.0 0.004166667 0.058333334 0.015277778 0.0013888889 0.0027777778 0.027777778 0.013888889 0.0 0.0013888889 0.016666668 0.043055557 0.004166667 0.0055555557 0.08194444 0.033333335 0.0 0.0013888889 0.011111111 0.015277778 0.0 0.0013888889 0.020833334 0.0027777778 0.0013888889 0.0013888889 0.023611112 0.004166667 0.0 0.0 0.011111111 0.05138889 0.0027777778 0.0027777778 0.031944446 0.02638889 0.0013888889 0.0027777778 0.013888889 0.018055556 0.0027777778 0.0027777778 0.027777778 0.0125 0.0013888889 0.0027777778 0.022222223 0.0 0.0027777778 0.0 0.04027778 0.015277778 0.0013888889 0.0 0.031944446 0.0 0.004166667 0.0027777778 0.011111111 0.06388889 0.0 0.008333334 0.058333334 0.2 0 255 0 Iteration 11 First 5 genes (1%) aaa:0.132 aac:0.000 aag:0.004 aat:0.058 aca:0.015 acc:0.001 acg:0.003 act:0.028 aga:0.014 agc:0.000 agg:0.001 agt:0.017 ata:0.043 atc:0.004 atg:0.006 att:0.082 caa:0.033 cac:0.000 cag:0.001 cat:0.011 cca:0.015 ccc:0.000 ccg:0.001 cct:0.021 cga:0.003 cgc:0.001 cgg:0.001 cgt:0.024 cta:0.004 ctc:0.000 ctg:0.000 ctt:0.011 gaa:0.051 gac:0.003 gag:0.003 gat:0.032 gca:0.026 gcc:0.001 gcg:0.003 gct:0.014 gga:0.018 ggc:0.003 ggg:0.003 ggt:0.028 gta:0.013 gtc:0.001 gtg:0.003 gtt:0.022 taa:0.000 tac:0.003 tag:0.000 tat:0.040 tca:0.015 tcc:0.001 tcg:0.000 tct:0.032 tga:0.000 tgc:0.004 tgg:0.003 tgt:0.011 tta:0.064 ttc:0.000 ttg:0.008 ttt:0.058 CodonUsageIt11 sphere 0.13194445 0.0 0.004166667 0.058333334 0.015277778 0.0013888889 0.0027777778 0.027777778 0.013888889 0.0 0.0013888889 0.016666668 0.043055557 0.004166667 0.0055555557 0.08194444 0.033333335 0.0 0.0013888889 0.011111111 0.015277778 0.0 0.0013888889 0.020833334 0.0027777778 0.0013888889 0.0013888889 0.023611112 0.004166667 0.0 0.0 0.011111111 0.05138889 0.0027777778 0.0027777778 0.031944446 0.02638889 0.0013888889 0.0027777778 0.013888889 0.018055556 0.0027777778 0.0027777778 0.027777778 0.0125 0.0013888889 0.0027777778 0.022222223 0.0 0.0027777778 0.0 0.04027778 0.015277778 0.0013888889 0.0 0.031944446 0.0 0.004166667 0.0027777778 0.011111111 0.06388889 0.0 0.008333334 0.058333334 0.2 0 255 0 Iteration 12 First 5 genes (1%) aaa:0.132 aac:0.000 aag:0.004 aat:0.058 aca:0.015 acc:0.001 acg:0.003 act:0.028 aga:0.014 agc:0.000 agg:0.001 agt:0.017 ata:0.043 atc:0.004 atg:0.006 att:0.082 caa:0.033 cac:0.000 cag:0.001 cat:0.011 cca:0.015 ccc:0.000 ccg:0.001 cct:0.021 cga:0.003 cgc:0.001 cgg:0.001 cgt:0.024 cta:0.004 ctc:0.000 ctg:0.000 ctt:0.011 gaa:0.051 gac:0.003 gag:0.003 gat:0.032 gca:0.026 gcc:0.001 gcg:0.003 gct:0.014 gga:0.018 ggc:0.003 ggg:0.003 ggt:0.028 gta:0.013 gtc:0.001 gtg:0.003 gtt:0.022 taa:0.000 tac:0.003 tag:0.000 tat:0.040 tca:0.015 tcc:0.001 tcg:0.000 tct:0.032 tga:0.000 tgc:0.004 tgg:0.003 tgt:0.011 tta:0.064 ttc:0.000 ttg:0.008 ttt:0.058 CodonUsageIt12 sphere 0.13194445 0.0 0.004166667 0.058333334 0.015277778 0.0013888889 0.0027777778 0.027777778 0.013888889 0.0 0.0013888889 0.016666668 0.043055557 0.004166667 0.0055555557 0.08194444 0.033333335 0.0 0.0013888889 0.011111111 0.015277778 0.0 0.0013888889 0.020833334 0.0027777778 0.0013888889 0.0013888889 0.023611112 0.004166667 0.0 0.0 0.011111111 0.05138889 0.0027777778 0.0027777778 0.031944446 0.02638889 0.0013888889 0.0027777778 0.013888889 0.018055556 0.0027777778 0.0027777778 0.027777778 0.0125 0.0013888889 0.0027777778 0.022222223 0.0 0.0027777778 0.0 0.04027778 0.015277778 0.0013888889 0.0 0.031944446 0.0 0.004166667 0.0027777778 0.011111111 0.06388889 0.0 0.008333334 0.058333334 0.2 0 255 0 Iteration 13 First 5 genes (1%) aaa:0.132 aac:0.000 aag:0.004 aat:0.058 aca:0.015 acc:0.001 acg:0.003 act:0.028 aga:0.014 agc:0.000 agg:0.001 agt:0.017 ata:0.043 atc:0.004 atg:0.006 att:0.082 caa:0.033 cac:0.000 cag:0.001 cat:0.011 cca:0.015 ccc:0.000 ccg:0.001 cct:0.021 cga:0.003 cgc:0.001 cgg:0.001 cgt:0.024 cta:0.004 ctc:0.000 ctg:0.000 ctt:0.011 gaa:0.051 gac:0.003 gag:0.003 gat:0.032 gca:0.026 gcc:0.001 gcg:0.003 gct:0.014 gga:0.018 ggc:0.003 ggg:0.003 ggt:0.028 gta:0.013 gtc:0.001 gtg:0.003 gtt:0.022 taa:0.000 tac:0.003 tag:0.000 tat:0.040 tca:0.015 tcc:0.001 tcg:0.000 tct:0.032 tga:0.000 tgc:0.004 tgg:0.003 tgt:0.011 tta:0.064 ttc:0.000 ttg:0.008 ttt:0.058 CodonUsageIt13 sphere 0.13194445 0.0 0.004166667 0.058333334 0.015277778 0.0013888889 0.0027777778 0.027777778 0.013888889 0.0 0.0013888889 0.016666668 0.043055557 0.004166667 0.0055555557 0.08194444 0.033333335 0.0 0.0013888889 0.011111111 0.015277778 0.0 0.0013888889 0.020833334 0.0027777778 0.0013888889 0.0013888889 0.023611112 0.004166667 0.0 0.0 0.011111111 0.05138889 0.0027777778 0.0027777778 0.031944446 0.02638889 0.0013888889 0.0027777778 0.013888889 0.018055556 0.0027777778 0.0027777778 0.027777778 0.0125 0.0013888889 0.0027777778 0.022222223 0.0 0.0027777778 0.0 0.04027778 0.015277778 0.0013888889 0.0 0.031944446 0.0 0.004166667 0.0027777778 0.011111111 0.06388889 0.0 0.008333334 0.058333334 0.2 0 255 0 Iteration 14 First 5 genes (1%) aaa:0.132 aac:0.000 aag:0.004 aat:0.058 aca:0.015 acc:0.001 acg:0.003 act:0.028 aga:0.014 agc:0.000 agg:0.001 agt:0.017 ata:0.043 atc:0.004 atg:0.006 att:0.082 caa:0.033 cac:0.000 cag:0.001 cat:0.011 cca:0.015 ccc:0.000 ccg:0.001 cct:0.021 cga:0.003 cgc:0.001 cgg:0.001 cgt:0.024 cta:0.004 ctc:0.000 ctg:0.000 ctt:0.011 gaa:0.051 gac:0.003 gag:0.003 gat:0.032 gca:0.026 gcc:0.001 gcg:0.003 gct:0.014 gga:0.018 ggc:0.003 ggg:0.003 ggt:0.028 gta:0.013 gtc:0.001 gtg:0.003 gtt:0.022 taa:0.000 tac:0.003 tag:0.000 tat:0.040 tca:0.015 tcc:0.001 tcg:0.000 tct:0.032 tga:0.000 tgc:0.004 tgg:0.003 tgt:0.011 tta:0.064 ttc:0.000 ttg:0.008 ttt:0.058 CodonUsageIt14 sphere 0.13194445 0.0 0.004166667 0.058333334 0.015277778 0.0013888889 0.0027777778 0.027777778 0.013888889 0.0 0.0013888889 0.016666668 0.043055557 0.004166667 0.0055555557 0.08194444 0.033333335 0.0 0.0013888889 0.011111111 0.015277778 0.0 0.0013888889 0.020833334 0.0027777778 0.0013888889 0.0013888889 0.023611112 0.004166667 0.0 0.0 0.011111111 0.05138889 0.0027777778 0.0027777778 0.031944446 0.02638889 0.0013888889 0.0027777778 0.013888889 0.018055556 0.0027777778 0.0027777778 0.027777778 0.0125 0.0013888889 0.0027777778 0.022222223 0.0 0.0027777778 0.0 0.04027778 0.015277778 0.0013888889 0.0 0.031944446 0.0 0.004166667 0.0027777778 0.011111111 0.06388889 0.0 0.008333334 0.058333334 0.2 0 255 0 aaa:1.000 aac:0.000 aag:0.032 aat:1.000 aca:0.550 acc:0.050 acg:0.100 act:1.000 aga:0.588 agc:0.000 agg:0.059 agt:0.522 ata:0.525 atc:0.051 atg:1.000 att:1.000 caa:1.000 cac:0.000 cag:0.042 cat:1.000 cca:0.733 ccc:0.000 ccg:0.067 cct:1.000 cga:0.118 cgc:0.059 cgg:0.059 cgt:1.000 cta:0.065 ctc:0.000 ctg:0.000 ctt:0.174 gaa:1.000 gac:0.087 gag:0.054 gat:1.000 gca:1.000 gcc:0.053 gcg:0.105 gct:0.526 gga:0.650 ggc:0.100 ggg:0.100 ggt:1.000 gta:0.562 gtc:0.062 gtg:0.125 gtt:1.000 taa:0.000 tac:0.069 tag:0.000 tat:1.000 tca:0.478 tcc:0.043 tcg:0.000 tct:1.000 tga:0.000 tgc:0.375 tgg:1.000 tgt:1.000 tta:1.000 ttc:0.000 ttg:0.130 ttt:1.000 ttt:1.000 ttc:0.000 ttg:0.130 tta:1.000 tct:1.000 tcc:0.043 tcg:0.000 tca:0.478 tgt:1.000 tgc:0.375 tgg:1.000 tga:0.000 tat:1.000 tac:0.069 tag:0.000 taa:0.000 ctt:0.174 ctc:0.000 ctg:0.000 cta:0.065 cct:1.000 ccc:0.000 ccg:0.067 cca:0.733 cgt:1.000 cgc:0.059 cgg:0.059 cga:0.118 cat:1.000 cac:0.000 cag:0.042 caa:1.000 gtt:1.000 gtc:0.062 gtg:0.125 gta:0.562 gct:0.526 gcc:0.053 gcg:0.105 gca:1.000 ggt:1.000 ggc:0.100 ggg:0.100 gga:0.650 gat:1.000 gac:0.087 gag:0.054 gaa:1.000 att:1.000 atc:0.051 atg:1.000 ata:0.525 act:1.000 acc:0.050 acg:0.100 aca:0.550 agt:0.522 agc:0.000 agg:0.059 aga:0.588 aat:1.000 aac:0.000 aag:0.032 aaa:1.000 // 0 - CAICLASS // 1 - STRAND // 2 - GC_CONT // 3 - GC_CONT3 // 4 - GC_SKEW // 5 - AT_SKEW // 6 - GENELENGTH // 7 - CAIEXT --- -0.049006034 -0.14477685 -0.73780274 0.20252644 -0.11178105 0.09852127 NaN