AdditionalInfoFile = "" ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 Looking for randomclass.txt... Loading sequence... Loaded... Getting seq... Got NC_000913 4279 CDS features found CodonUsage sphere 0.033807855 0.021772666 0.010405648 0.017832149 0.007142878 0.023489874 0.014530336 0.009019947 0.0021555345 0.016156195 0.0012597279 0.0088387225 0.0044208346 0.025263807 0.02540304 0.030485416 0.015420248 0.009802304 0.028960481 0.013012768 0.008502795 0.005533226 0.02333959 0.0070721568 0.0036163768 0.022110065 0.005488288 0.020988835 0.00392431 0.01114454 0.052845955 0.011084869 0.03963207 0.019162597 0.017927917 0.03231165 0.020255098 0.025612993 0.033815958 0.01534658 0.008042368 0.029781884 0.011149697 0.02485642 0.010961106 0.015324479 0.02650217 0.01836919 2.725727E-5 0.012305552 1.3260294E-5 0.016251227 0.007234227 0.008681072 0.009019947 0.008510162 5.230449E-5 0.0065748957 0.01534879 0.005231186 0.013996976 0.016665243 0.013766395 0.022437891 0.4 255 0 0 aaa:0.034 aac:0.022 aag:0.010 aat:0.018 aca:0.007 acc:0.023 acg:0.015 act:0.009 aga:0.002 agc:0.016 agg:0.001 agt:0.009 ata:0.004 atc:0.025 atg:0.025 att:0.030 caa:0.015 cac:0.010 cag:0.029 cat:0.013 cca:0.009 ccc:0.006 ccg:0.023 cct:0.007 cga:0.004 cgc:0.022 cgg:0.005 cgt:0.021 cta:0.004 ctc:0.011 ctg:0.053 ctt:0.011 gaa:0.040 gac:0.019 gag:0.018 gat:0.032 gca:0.020 gcc:0.026 gcg:0.034 gct:0.015 gga:0.008 ggc:0.030 ggg:0.011 ggt:0.025 gta:0.011 gtc:0.015 gtg:0.027 gtt:0.018 taa:0.000 tac:0.012 tag:0.000 tat:0.016 tca:0.007 tcc:0.009 tcg:0.009 tct:0.009 tga:0.000 tgc:0.007 tgg:0.015 tgt:0.005 tta:0.014 ttc:0.017 ttg:0.014 ttt:0.022 Number of points = 4279 Iteration 0 First 2139 genes (50%) aaa:0.036 aac:0.025 aag:0.010 aat:0.014 aca:0.005 acc:0.026 acg:0.013 act:0.009 aga:0.001 agc:0.016 agg:0.000 agt:0.006 ata:0.002 atc:0.028 atg:0.026 att:0.029 caa:0.013 cac:0.011 cag:0.030 cat:0.012 cca:0.008 ccc:0.004 ccg:0.027 cct:0.006 cga:0.002 cgc:0.024 cgg:0.004 cgt:0.024 cta:0.002 ctc:0.010 ctg:0.060 ctt:0.008 gaa:0.043 gac:0.022 gag:0.018 gat:0.033 gca:0.019 gcc:0.026 gcg:0.037 gct:0.015 gga:0.005 ggc:0.034 ggg:0.010 ggt:0.028 gta:0.011 gtc:0.015 gtg:0.029 gtt:0.018 taa:0.000 tac:0.014 tag:0.000 tat:0.015 tca:0.005 tcc:0.009 tcg:0.009 tct:0.008 tga:0.000 tgc:0.007 tgg:0.014 tgt:0.004 tta:0.009 ttc:0.019 ttg:0.011 ttt:0.020 CodonUsageIt0 sphere 0.03612159 0.02520132 0.009975333 0.014320208 0.0045341235 0.026477767 0.01348099 0.008736736 6.695467E-4 0.016409768 4.0851487E-4 0.0064709797 0.0016784349 0.028162727 0.02642817 0.029384356 0.012878006 0.010751902 0.030254897 0.011647241 0.0076156044 0.003867187 0.027491875 0.005502552 0.0019472977 0.023973165 0.0035904932 0.02371344 0.0024380377 0.010205041 0.059647083 0.008268184 0.042776596 0.021954084 0.017901564 0.032708596 0.018901316 0.026270246 0.03746982 0.014929717 0.005430768 0.03393936 0.00991138 0.027720278 0.010592673 0.01507981 0.029197719 0.018381864 2.6103187E-6 0.013858181 2.6103187E-6 0.014962346 0.0051110038 0.009309702 0.0086388495 0.008416972 3.915478E-6 0.0065662563 0.01433587 0.004365758 0.0091831 0.018971795 0.01090069 0.01995197 0.2 0 255 0 Iteration 1 First 1069 genes (25%) aaa:0.039 aac:0.029 aag:0.010 aat:0.011 aca:0.003 acc:0.028 acg:0.012 act:0.009 aga:0.000 agc:0.016 agg:0.000 agt:0.005 ata:0.001 atc:0.032 atg:0.027 att:0.027 caa:0.010 cac:0.012 cag:0.030 cat:0.010 cca:0.007 ccc:0.002 ccg:0.029 cct:0.005 cga:0.001 cgc:0.023 cgg:0.002 cgt:0.026 cta:0.002 ctc:0.009 ctg:0.063 ctt:0.006 gaa:0.046 gac:0.025 gag:0.018 gat:0.032 gca:0.019 gcc:0.025 gcg:0.037 gct:0.016 gga:0.004 ggc:0.036 ggg:0.008 ggt:0.031 gta:0.011 gtc:0.014 gtg:0.029 gtt:0.020 taa:0.000 tac:0.016 tag:0.000 tat:0.014 tca:0.004 tcc:0.010 tcg:0.008 tct:0.010 tga:0.000 tgc:0.007 tgg:0.013 tgt:0.004 tta:0.006 ttc:0.022 ttg:0.008 ttt:0.017 CodonUsageIt1 sphere 0.039322942 0.028721362 0.010438517 0.011387248 0.0033675025 0.028491592 0.011528076 0.009413195 3.8542214E-4 0.016027138 2.025937E-4 0.0046201246 9.8085E-4 0.031829447 0.026932608 0.027137673 0.010109919 0.012202564 0.030295169 0.009991328 0.006749829 0.0023940646 0.029311849 0.0046275365 0.0010846175 0.023266157 0.002097586 0.02633471 0.0015985137 0.009356369 0.06308323 0.006468174 0.046270423 0.025316799 0.017838128 0.031829447 0.018890627 0.024528662 0.037482303 0.016130906 0.0038517509 0.036456984 0.008163043 0.030890597 0.011157477 0.014156852 0.029287143 0.019980185 0.0 0.015804779 0.0 0.013820843 0.0041556414 0.010179098 0.0075750276 0.009692378 7.4119644E-6 0.006584295 0.013180943 0.0039555184 0.0061519304 0.021702232 0.008175396 0.017025283 0.2 0 255 0 Iteration 2 First 513 genes (12%) aaa:0.043 aac:0.032 aag:0.011 aat:0.008 aca:0.003 acc:0.030 acg:0.009 act:0.011 aga:0.000 agc:0.015 agg:0.000 agt:0.003 ata:0.001 atc:0.036 atg:0.027 att:0.024 caa:0.007 cac:0.014 cag:0.030 cat:0.008 cca:0.006 ccc:0.001 ccg:0.030 cct:0.004 cga:0.001 cgc:0.022 cgg:0.001 cgt:0.030 cta:0.001 ctc:0.008 ctg:0.065 ctt:0.005 gaa:0.050 gac:0.029 gag:0.018 gat:0.031 gca:0.020 gcc:0.022 gcg:0.036 gct:0.019 gga:0.003 ggc:0.038 ggg:0.006 ggt:0.035 gta:0.012 gtc:0.012 gtg:0.027 gtt:0.024 taa:0.000 tac:0.018 tag:0.000 tat:0.012 tca:0.003 tcc:0.012 tcg:0.006 tct:0.012 tga:0.000 tgc:0.006 tgg:0.012 tgt:0.004 tta:0.004 ttc:0.024 ttg:0.006 ttt:0.014 CodonUsageIt2 sphere 0.043256544 0.031691797 0.011094175 0.008362829 0.0025062913 0.030228943 0.009053338 0.011135094 2.0459521E-4 0.014608098 1.3810176E-4 0.0029717453 5.2171777E-4 0.03577347 0.027221393 0.023993904 0.007437036 0.01367719 0.030448882 0.007958754 0.0058309636 0.0012787201 0.030218713 0.003933343 5.98441E-4 0.022045134 8.95104E-4 0.029610042 8.746445E-4 0.008245187 0.065153345 0.0051557994 0.05019232 0.029200852 0.017733289 0.03075066 0.019876424 0.021753585 0.03646398 0.01920126 0.0025318656 0.03761483 0.0059128017 0.035175033 0.012245024 0.012459848 0.027405528 0.023564253 0.0 0.01752358 0.0 0.0123064015 0.0030126644 0.011646582 0.0057542403 0.0119381305 1.0229761E-5 0.0063833706 0.011667042 0.0036469095 0.003887309 0.024137119 0.0059076864 0.013973853 0.2 0 255 0 Iteration 3 First 256 genes (6%) aaa:0.048 aac:0.034 aag:0.012 aat:0.006 aca:0.002 acc:0.031 acg:0.006 act:0.014 aga:0.000 agc:0.013 agg:0.000 agt:0.002 ata:0.000 atc:0.040 atg:0.027 att:0.021 caa:0.006 cac:0.014 cag:0.030 cat:0.006 cca:0.005 ccc:0.000 ccg:0.030 cct:0.004 cga:0.000 cgc:0.019 cgg:0.000 cgt:0.033 cta:0.001 ctc:0.006 ctg:0.067 ctt:0.004 gaa:0.055 gac:0.033 gag:0.016 gat:0.029 gca:0.022 gcc:0.017 gcg:0.033 gct:0.025 gga:0.001 ggc:0.037 ggg:0.003 ggt:0.041 gta:0.015 gtc:0.010 gtg:0.023 gtt:0.029 taa:0.000 tac:0.019 tag:0.000 tat:0.011 tca:0.002 tcc:0.013 tcg:0.004 tct:0.015 tga:0.000 tgc:0.006 tgg:0.010 tgt:0.003 tta:0.003 ttc:0.026 ttg:0.004 ttt:0.011 CodonUsageIt3 sphere 0.047944117 0.034005024 0.011766078 0.0064978427 0.0019504129 0.031068806 0.0064554424 0.014235894 1.8020118E-4 0.013101687 8.480056E-5 0.0020776137 2.2260146E-4 0.040195465 0.026584975 0.020585336 0.006190441 0.014426695 0.030401 0.005893639 0.005289435 4.7700314E-4 0.030475201 0.003646424 3.180021E-4 0.018645523 2.120014E-4 0.03341142 5.0880335E-4 0.0064554424 0.06721504 0.0039962265 0.05490836 0.03329482 0.016387708 0.02871559 0.022037545 0.016854111 0.033051018 0.025206966 0.0014522095 0.036941245 0.003307222 0.040545266 0.014638697 0.010091267 0.023150552 0.029309193 0.0 0.019027125 0.0 0.01055767 0.0022260146 0.012953285 0.003763025 0.014575096 0.0 0.0060102395 0.010419869 0.0032118212 0.0025228166 0.02574757 0.003763025 0.010812071 0.2 0 255 0 Iteration 4 First 128 genes (3%) aaa:0.053 aac:0.034 aag:0.012 aat:0.005 aca:0.001 acc:0.031 acg:0.004 act:0.018 aga:0.000 agc:0.011 agg:0.000 agt:0.001 ata:0.000 atc:0.045 atg:0.026 att:0.016 caa:0.005 cac:0.015 cag:0.030 cat:0.004 cca:0.005 ccc:0.000 ccg:0.029 cct:0.003 cga:0.000 cgc:0.018 cgg:0.000 cgt:0.037 cta:0.000 ctc:0.005 ctg:0.068 ctt:0.003 gaa:0.060 gac:0.038 gag:0.015 gat:0.025 gca:0.025 gcc:0.012 gcg:0.030 gct:0.034 gga:0.001 ggc:0.036 ggg:0.002 ggt:0.047 gta:0.018 gtc:0.008 gtg:0.018 gtt:0.036 taa:0.000 tac:0.019 tag:0.000 tat:0.008 tca:0.001 tcc:0.014 tcg:0.002 tct:0.018 tga:0.000 tgc:0.005 tgg:0.008 tgt:0.003 tta:0.001 ttc:0.027 ttg:0.002 ttt:0.008 CodonUsageIt4 sphere 0.052503224 0.033954743 0.011818501 0.0045257355 0.0014069645 0.031375308 0.00396295 0.018126393 1.4069644E-4 0.011255716 4.6898815E-5 0.001031774 4.6898815E-5 0.04471802 0.026052292 0.015781451 0.0051354202 0.014773127 0.03013249 0.004009849 0.0045491853 2.579435E-4 0.029499356 0.0033063665 1.8759526E-4 0.017704302 9.379763E-5 0.036604527 2.813929E-4 0.004642983 0.06788603 0.0032829172 0.060335327 0.037800446 0.015289014 0.02495017 0.024621878 0.012029546 0.029921444 0.034353383 7.7383046E-4 0.036088638 0.0017352562 0.046922266 0.018079493 0.0075507094 0.018454684 0.036323134 0.0 0.019463008 0.0 0.0075507094 0.0012897174 0.0143275885 0.0019697503 0.017727753 0.0 0.00473678 0.0076914057 0.002696682 0.0014304139 0.026685426 0.0020869973 0.008019698 0.2 0 255 0 Iteration 5 First 42 genes (1%) aaa:0.061 aac:0.041 aag:0.013 aat:0.002 aca:0.001 acc:0.031 acg:0.002 act:0.023 aga:0.000 agc:0.010 agg:0.000 agt:0.000 ata:0.000 atc:0.048 atg:0.024 att:0.010 caa:0.004 cac:0.014 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.027 cct:0.002 cga:0.000 cgc:0.014 cgg:0.000 cgt:0.035 cta:0.000 ctc:0.002 ctg:0.068 ctt:0.002 gaa:0.060 gac:0.044 gag:0.012 gat:0.018 gca:0.027 gcc:0.007 gcg:0.023 gct:0.049 gga:0.000 ggc:0.035 ggg:0.001 ggt:0.053 gta:0.024 gtc:0.004 gtg:0.011 gtt:0.046 taa:0.000 tac:0.022 tag:0.000 tat:0.005 tca:0.001 tcc:0.015 tcg:0.001 tct:0.021 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.002 tta:0.001 ttc:0.028 ttg:0.001 ttt:0.005 CodonUsageIt5 sphere 0.06059681 0.040754024 0.012592536 0.0021369152 9.921392E-4 0.031290542 0.001526368 0.023048157 0.0 0.009845073 0.0 4.579104E-4 7.63184E-5 0.048385866 0.023963979 0.010302984 0.0035106465 0.014118904 0.031137908 0.003052736 0.0037396017 7.63184E-5 0.027398305 0.0022132336 1.526368E-4 0.014118904 0.0 0.035488058 1.526368E-4 0.0024421888 0.06815233 0.0016026864 0.060367856 0.04441731 0.011981989 0.018469052 0.02671144 0.007097611 0.022590246 0.049225368 2.289552E-4 0.03480119 8.395024E-4 0.053041287 0.023506068 0.0035106465 0.01144776 0.045562085 0.0 0.022056017 0.0 0.0050370144 6.868656E-4 0.014882088 6.105472E-4 0.021369152 0.0 0.0043501486 0.007097611 0.0016026864 9.158208E-4 0.027932534 0.0010684576 0.00526597 0.2 0 255 0 Iteration 6 First 42 genes (1%) aaa:0.064 aac:0.042 aag:0.013 aat:0.002 aca:0.001 acc:0.031 acg:0.001 act:0.025 aga:0.000 agc:0.010 agg:0.000 agt:0.001 ata:0.000 atc:0.049 atg:0.023 att:0.010 caa:0.003 cac:0.014 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.027 cct:0.002 cga:0.000 cgc:0.015 cgg:0.000 cgt:0.035 cta:0.000 ctc:0.002 ctg:0.065 ctt:0.002 gaa:0.061 gac:0.045 gag:0.011 gat:0.018 gca:0.027 gcc:0.006 gcg:0.019 gct:0.053 gga:0.000 ggc:0.037 ggg:0.001 ggt:0.053 gta:0.025 gtc:0.003 gtg:0.011 gtt:0.049 taa:0.000 tac:0.021 tag:0.000 tat:0.005 tca:0.001 tcc:0.013 tcg:0.000 tct:0.021 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.001 tta:0.001 ttc:0.028 ttg:0.001 ttt:0.005 CodonUsageIt6 sphere 0.063869424 0.04204737 0.012507762 0.0021289808 0.001153198 0.030958928 9.7578287E-4 0.024926817 0.0 0.010201366 0.0 5.322452E-4 8.870753E-5 0.04852302 0.02262042 0.009757829 0.0033708862 0.013838375 0.030515391 0.0033708862 0.003991839 8.870753E-5 0.026523551 0.0022176884 8.870753E-5 0.014548035 0.0 0.034684643 1.7741506E-4 0.0019515657 0.06511133 0.0015967356 0.060587242 0.045418255 0.010999734 0.018007629 0.027233211 0.0059434045 0.018983413 0.05286969 2.661226E-4 0.03663621 6.209527E-4 0.052780982 0.024571987 0.0029273485 0.011088441 0.048789144 0.0 0.021467222 0.0 0.0051450366 5.322452E-4 0.013394837 1.7741506E-4 0.021378515 0.0 0.004169254 0.0069191875 0.001153198 7.983678E-4 0.028297702 0.001153198 0.0053224517 0.2 0 255 0 Iteration 7 First 42 genes (1%) aaa:0.064 aac:0.042 aag:0.013 aat:0.002 aca:0.001 acc:0.031 acg:0.001 act:0.025 aga:0.000 agc:0.010 agg:0.000 agt:0.001 ata:0.000 atc:0.049 atg:0.023 att:0.010 caa:0.003 cac:0.014 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.027 cct:0.002 cga:0.000 cgc:0.015 cgg:0.000 cgt:0.035 cta:0.000 ctc:0.002 ctg:0.065 ctt:0.002 gaa:0.061 gac:0.045 gag:0.011 gat:0.018 gca:0.027 gcc:0.006 gcg:0.019 gct:0.053 gga:0.000 ggc:0.037 ggg:0.001 ggt:0.053 gta:0.025 gtc:0.003 gtg:0.011 gtt:0.049 taa:0.000 tac:0.021 tag:0.000 tat:0.005 tca:0.001 tcc:0.013 tcg:0.000 tct:0.021 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.001 tta:0.001 ttc:0.028 ttg:0.001 ttt:0.005 CodonUsageIt7 sphere 0.063869424 0.04204737 0.012507762 0.0021289808 0.001153198 0.030958928 9.7578287E-4 0.024926817 0.0 0.010201366 0.0 5.322452E-4 8.870753E-5 0.04852302 0.02262042 0.009757829 0.0033708862 0.013838375 0.030515391 0.0033708862 0.003991839 8.870753E-5 0.026523551 0.0022176884 8.870753E-5 0.014548035 0.0 0.034684643 1.7741506E-4 0.0019515657 0.06511133 0.0015967356 0.060587242 0.045418255 0.010999734 0.018007629 0.027233211 0.0059434045 0.018983413 0.05286969 2.661226E-4 0.03663621 6.209527E-4 0.052780982 0.024571987 0.0029273485 0.011088441 0.048789144 0.0 0.021467222 0.0 0.0051450366 5.322452E-4 0.013394837 1.7741506E-4 0.021378515 0.0 0.004169254 0.0069191875 0.001153198 7.983678E-4 0.028297702 0.001153198 0.0053224517 0.2 0 255 0 Iteration 8 First 42 genes (1%) aaa:0.064 aac:0.042 aag:0.013 aat:0.002 aca:0.001 acc:0.031 acg:0.001 act:0.025 aga:0.000 agc:0.010 agg:0.000 agt:0.001 ata:0.000 atc:0.049 atg:0.023 att:0.010 caa:0.003 cac:0.014 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.027 cct:0.002 cga:0.000 cgc:0.015 cgg:0.000 cgt:0.035 cta:0.000 ctc:0.002 ctg:0.065 ctt:0.002 gaa:0.061 gac:0.045 gag:0.011 gat:0.018 gca:0.027 gcc:0.006 gcg:0.019 gct:0.053 gga:0.000 ggc:0.037 ggg:0.001 ggt:0.053 gta:0.025 gtc:0.003 gtg:0.011 gtt:0.049 taa:0.000 tac:0.021 tag:0.000 tat:0.005 tca:0.001 tcc:0.013 tcg:0.000 tct:0.021 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.001 tta:0.001 ttc:0.028 ttg:0.001 ttt:0.005 CodonUsageIt8 sphere 0.063869424 0.04204737 0.012507762 0.0021289808 0.001153198 0.030958928 9.7578287E-4 0.024926817 0.0 0.010201366 0.0 5.322452E-4 8.870753E-5 0.04852302 0.02262042 0.009757829 0.0033708862 0.013838375 0.030515391 0.0033708862 0.003991839 8.870753E-5 0.026523551 0.0022176884 8.870753E-5 0.014548035 0.0 0.034684643 1.7741506E-4 0.0019515657 0.06511133 0.0015967356 0.060587242 0.045418255 0.010999734 0.018007629 0.027233211 0.0059434045 0.018983413 0.05286969 2.661226E-4 0.03663621 6.209527E-4 0.052780982 0.024571987 0.0029273485 0.011088441 0.048789144 0.0 0.021467222 0.0 0.0051450366 5.322452E-4 0.013394837 1.7741506E-4 0.021378515 0.0 0.004169254 0.0069191875 0.001153198 7.983678E-4 0.028297702 0.001153198 0.0053224517 0.2 0 255 0 Iteration 9 First 42 genes (1%) aaa:0.064 aac:0.042 aag:0.013 aat:0.002 aca:0.001 acc:0.031 acg:0.001 act:0.025 aga:0.000 agc:0.010 agg:0.000 agt:0.001 ata:0.000 atc:0.049 atg:0.023 att:0.010 caa:0.003 cac:0.014 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.027 cct:0.002 cga:0.000 cgc:0.015 cgg:0.000 cgt:0.035 cta:0.000 ctc:0.002 ctg:0.065 ctt:0.002 gaa:0.061 gac:0.045 gag:0.011 gat:0.018 gca:0.027 gcc:0.006 gcg:0.019 gct:0.053 gga:0.000 ggc:0.037 ggg:0.001 ggt:0.053 gta:0.025 gtc:0.003 gtg:0.011 gtt:0.049 taa:0.000 tac:0.021 tag:0.000 tat:0.005 tca:0.001 tcc:0.013 tcg:0.000 tct:0.021 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.001 tta:0.001 ttc:0.028 ttg:0.001 ttt:0.005 CodonUsageIt9 sphere 0.063869424 0.04204737 0.012507762 0.0021289808 0.001153198 0.030958928 9.7578287E-4 0.024926817 0.0 0.010201366 0.0 5.322452E-4 8.870753E-5 0.04852302 0.02262042 0.009757829 0.0033708862 0.013838375 0.030515391 0.0033708862 0.003991839 8.870753E-5 0.026523551 0.0022176884 8.870753E-5 0.014548035 0.0 0.034684643 1.7741506E-4 0.0019515657 0.06511133 0.0015967356 0.060587242 0.045418255 0.010999734 0.018007629 0.027233211 0.0059434045 0.018983413 0.05286969 2.661226E-4 0.03663621 6.209527E-4 0.052780982 0.024571987 0.0029273485 0.011088441 0.048789144 0.0 0.021467222 0.0 0.0051450366 5.322452E-4 0.013394837 1.7741506E-4 0.021378515 0.0 0.004169254 0.0069191875 0.001153198 7.983678E-4 0.028297702 0.001153198 0.0053224517 0.2 0 255 0 Iteration 10 First 42 genes (1%) aaa:0.064 aac:0.042 aag:0.013 aat:0.002 aca:0.001 acc:0.031 acg:0.001 act:0.025 aga:0.000 agc:0.010 agg:0.000 agt:0.001 ata:0.000 atc:0.049 atg:0.023 att:0.010 caa:0.003 cac:0.014 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.027 cct:0.002 cga:0.000 cgc:0.015 cgg:0.000 cgt:0.035 cta:0.000 ctc:0.002 ctg:0.065 ctt:0.002 gaa:0.061 gac:0.045 gag:0.011 gat:0.018 gca:0.027 gcc:0.006 gcg:0.019 gct:0.053 gga:0.000 ggc:0.037 ggg:0.001 ggt:0.053 gta:0.025 gtc:0.003 gtg:0.011 gtt:0.049 taa:0.000 tac:0.021 tag:0.000 tat:0.005 tca:0.001 tcc:0.013 tcg:0.000 tct:0.021 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.001 tta:0.001 ttc:0.028 ttg:0.001 ttt:0.005 CodonUsageIt10 sphere 0.063869424 0.04204737 0.012507762 0.0021289808 0.001153198 0.030958928 9.7578287E-4 0.024926817 0.0 0.010201366 0.0 5.322452E-4 8.870753E-5 0.04852302 0.02262042 0.009757829 0.0033708862 0.013838375 0.030515391 0.0033708862 0.003991839 8.870753E-5 0.026523551 0.0022176884 8.870753E-5 0.014548035 0.0 0.034684643 1.7741506E-4 0.0019515657 0.06511133 0.0015967356 0.060587242 0.045418255 0.010999734 0.018007629 0.027233211 0.0059434045 0.018983413 0.05286969 2.661226E-4 0.03663621 6.209527E-4 0.052780982 0.024571987 0.0029273485 0.011088441 0.048789144 0.0 0.021467222 0.0 0.0051450366 5.322452E-4 0.013394837 1.7741506E-4 0.021378515 0.0 0.004169254 0.0069191875 0.001153198 7.983678E-4 0.028297702 0.001153198 0.0053224517 0.2 0 255 0 Iteration 11 First 42 genes (1%) aaa:0.064 aac:0.042 aag:0.013 aat:0.002 aca:0.001 acc:0.031 acg:0.001 act:0.025 aga:0.000 agc:0.010 agg:0.000 agt:0.001 ata:0.000 atc:0.049 atg:0.023 att:0.010 caa:0.003 cac:0.014 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.027 cct:0.002 cga:0.000 cgc:0.015 cgg:0.000 cgt:0.035 cta:0.000 ctc:0.002 ctg:0.065 ctt:0.002 gaa:0.061 gac:0.045 gag:0.011 gat:0.018 gca:0.027 gcc:0.006 gcg:0.019 gct:0.053 gga:0.000 ggc:0.037 ggg:0.001 ggt:0.053 gta:0.025 gtc:0.003 gtg:0.011 gtt:0.049 taa:0.000 tac:0.021 tag:0.000 tat:0.005 tca:0.001 tcc:0.013 tcg:0.000 tct:0.021 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.001 tta:0.001 ttc:0.028 ttg:0.001 ttt:0.005 CodonUsageIt11 sphere 0.063869424 0.04204737 0.012507762 0.0021289808 0.001153198 0.030958928 9.7578287E-4 0.024926817 0.0 0.010201366 0.0 5.322452E-4 8.870753E-5 0.04852302 0.02262042 0.009757829 0.0033708862 0.013838375 0.030515391 0.0033708862 0.003991839 8.870753E-5 0.026523551 0.0022176884 8.870753E-5 0.014548035 0.0 0.034684643 1.7741506E-4 0.0019515657 0.06511133 0.0015967356 0.060587242 0.045418255 0.010999734 0.018007629 0.027233211 0.0059434045 0.018983413 0.05286969 2.661226E-4 0.03663621 6.209527E-4 0.052780982 0.024571987 0.0029273485 0.011088441 0.048789144 0.0 0.021467222 0.0 0.0051450366 5.322452E-4 0.013394837 1.7741506E-4 0.021378515 0.0 0.004169254 0.0069191875 0.001153198 7.983678E-4 0.028297702 0.001153198 0.0053224517 0.2 0 255 0 Iteration 12 First 42 genes (1%) aaa:0.064 aac:0.042 aag:0.013 aat:0.002 aca:0.001 acc:0.031 acg:0.001 act:0.025 aga:0.000 agc:0.010 agg:0.000 agt:0.001 ata:0.000 atc:0.049 atg:0.023 att:0.010 caa:0.003 cac:0.014 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.027 cct:0.002 cga:0.000 cgc:0.015 cgg:0.000 cgt:0.035 cta:0.000 ctc:0.002 ctg:0.065 ctt:0.002 gaa:0.061 gac:0.045 gag:0.011 gat:0.018 gca:0.027 gcc:0.006 gcg:0.019 gct:0.053 gga:0.000 ggc:0.037 ggg:0.001 ggt:0.053 gta:0.025 gtc:0.003 gtg:0.011 gtt:0.049 taa:0.000 tac:0.021 tag:0.000 tat:0.005 tca:0.001 tcc:0.013 tcg:0.000 tct:0.021 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.001 tta:0.001 ttc:0.028 ttg:0.001 ttt:0.005 CodonUsageIt12 sphere 0.063869424 0.04204737 0.012507762 0.0021289808 0.001153198 0.030958928 9.7578287E-4 0.024926817 0.0 0.010201366 0.0 5.322452E-4 8.870753E-5 0.04852302 0.02262042 0.009757829 0.0033708862 0.013838375 0.030515391 0.0033708862 0.003991839 8.870753E-5 0.026523551 0.0022176884 8.870753E-5 0.014548035 0.0 0.034684643 1.7741506E-4 0.0019515657 0.06511133 0.0015967356 0.060587242 0.045418255 0.010999734 0.018007629 0.027233211 0.0059434045 0.018983413 0.05286969 2.661226E-4 0.03663621 6.209527E-4 0.052780982 0.024571987 0.0029273485 0.011088441 0.048789144 0.0 0.021467222 0.0 0.0051450366 5.322452E-4 0.013394837 1.7741506E-4 0.021378515 0.0 0.004169254 0.0069191875 0.001153198 7.983678E-4 0.028297702 0.001153198 0.0053224517 0.2 0 255 0 Iteration 13 First 42 genes (1%) aaa:0.064 aac:0.042 aag:0.013 aat:0.002 aca:0.001 acc:0.031 acg:0.001 act:0.025 aga:0.000 agc:0.010 agg:0.000 agt:0.001 ata:0.000 atc:0.049 atg:0.023 att:0.010 caa:0.003 cac:0.014 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.027 cct:0.002 cga:0.000 cgc:0.015 cgg:0.000 cgt:0.035 cta:0.000 ctc:0.002 ctg:0.065 ctt:0.002 gaa:0.061 gac:0.045 gag:0.011 gat:0.018 gca:0.027 gcc:0.006 gcg:0.019 gct:0.053 gga:0.000 ggc:0.037 ggg:0.001 ggt:0.053 gta:0.025 gtc:0.003 gtg:0.011 gtt:0.049 taa:0.000 tac:0.021 tag:0.000 tat:0.005 tca:0.001 tcc:0.013 tcg:0.000 tct:0.021 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.001 tta:0.001 ttc:0.028 ttg:0.001 ttt:0.005 CodonUsageIt13 sphere 0.063869424 0.04204737 0.012507762 0.0021289808 0.001153198 0.030958928 9.7578287E-4 0.024926817 0.0 0.010201366 0.0 5.322452E-4 8.870753E-5 0.04852302 0.02262042 0.009757829 0.0033708862 0.013838375 0.030515391 0.0033708862 0.003991839 8.870753E-5 0.026523551 0.0022176884 8.870753E-5 0.014548035 0.0 0.034684643 1.7741506E-4 0.0019515657 0.06511133 0.0015967356 0.060587242 0.045418255 0.010999734 0.018007629 0.027233211 0.0059434045 0.018983413 0.05286969 2.661226E-4 0.03663621 6.209527E-4 0.052780982 0.024571987 0.0029273485 0.011088441 0.048789144 0.0 0.021467222 0.0 0.0051450366 5.322452E-4 0.013394837 1.7741506E-4 0.021378515 0.0 0.004169254 0.0069191875 0.001153198 7.983678E-4 0.028297702 0.001153198 0.0053224517 0.2 0 255 0 Iteration 14 First 42 genes (1%) aaa:0.064 aac:0.042 aag:0.013 aat:0.002 aca:0.001 acc:0.031 acg:0.001 act:0.025 aga:0.000 agc:0.010 agg:0.000 agt:0.001 ata:0.000 atc:0.049 atg:0.023 att:0.010 caa:0.003 cac:0.014 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.027 cct:0.002 cga:0.000 cgc:0.015 cgg:0.000 cgt:0.035 cta:0.000 ctc:0.002 ctg:0.065 ctt:0.002 gaa:0.061 gac:0.045 gag:0.011 gat:0.018 gca:0.027 gcc:0.006 gcg:0.019 gct:0.053 gga:0.000 ggc:0.037 ggg:0.001 ggt:0.053 gta:0.025 gtc:0.003 gtg:0.011 gtt:0.049 taa:0.000 tac:0.021 tag:0.000 tat:0.005 tca:0.001 tcc:0.013 tcg:0.000 tct:0.021 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.001 tta:0.001 ttc:0.028 ttg:0.001 ttt:0.005 CodonUsageIt14 sphere 0.063869424 0.04204737 0.012507762 0.0021289808 0.001153198 0.030958928 9.7578287E-4 0.024926817 0.0 0.010201366 0.0 5.322452E-4 8.870753E-5 0.04852302 0.02262042 0.009757829 0.0033708862 0.013838375 0.030515391 0.0033708862 0.003991839 8.870753E-5 0.026523551 0.0022176884 8.870753E-5 0.014548035 0.0 0.034684643 1.7741506E-4 0.0019515657 0.06511133 0.0015967356 0.060587242 0.045418255 0.010999734 0.018007629 0.027233211 0.0059434045 0.018983413 0.05286969 2.661226E-4 0.03663621 6.209527E-4 0.052780982 0.024571987 0.0029273485 0.011088441 0.048789144 0.0 0.021467222 0.0 0.0051450366 5.322452E-4 0.013394837 1.7741506E-4 0.021378515 0.0 0.004169254 0.0069191875 0.001153198 7.983678E-4 0.028297702 0.001153198 0.0053224517 0.2 0 255 0 aaa:1.000 aac:1.000 aag:0.196 aat:0.051 aca:0.037 acc:1.000 acg:0.032 act:0.805 aga:0.000 agc:0.477 agg:0.000 agt:0.025 ata:0.002 atc:1.000 atg:1.000 att:0.201 caa:0.110 cac:1.000 cag:1.000 cat:0.244 cca:0.151 ccc:0.003 ccg:1.000 cct:0.084 cga:0.003 cgc:0.419 cgg:0.000 cgt:1.000 cta:0.003 ctc:0.030 ctg:1.000 ctt:0.025 gaa:1.000 gac:1.000 gag:0.182 gat:0.396 gca:0.515 gcc:0.112 gcg:0.359 gct:1.000 gga:0.005 ggc:0.694 ggg:0.012 ggt:1.000 gta:0.504 gtc:0.060 gtg:0.227 gtt:1.000 taa:0.000 tac:1.000 tag:0.000 tat:0.240 tca:0.025 tcc:0.627 tcg:0.008 tct:1.000 tga:0.000 tgc:1.000 tgg:1.000 tgt:0.277 tta:0.012 ttc:1.000 ttg:0.018 ttt:0.188 ttt:0.188 ttc:1.000 ttg:0.018 tta:0.012 tct:1.000 tcc:0.627 tcg:0.008 tca:0.025 tgt:0.277 tgc:1.000 tgg:1.000 tga:0.000 tat:0.240 tac:1.000 tag:0.000 taa:0.000 ctt:0.025 ctc:0.030 ctg:1.000 cta:0.003 cct:0.084 ccc:0.003 ccg:1.000 cca:0.151 cgt:1.000 cgc:0.419 cgg:0.000 cga:0.003 cat:0.244 cac:1.000 cag:1.000 caa:0.110 gtt:1.000 gtc:0.060 gtg:0.227 gta:0.504 gct:1.000 gcc:0.112 gcg:0.359 gca:0.515 ggt:1.000 ggc:0.694 ggg:0.012 gga:0.005 gat:0.396 gac:1.000 gag:0.182 gaa:1.000 att:0.201 atc:1.000 atg:1.000 ata:0.002 act:0.805 acc:1.000 acg:0.032 aca:0.037 agt:0.025 agc:0.477 agg:0.000 aga:0.000 aat:0.051 aac:1.000 aag:0.196 aaa:1.000 // 0 - CAICLASS // 1 - STRAND // 2 - GC_CONT // 3 - GC_CONT3 // 4 - GC_SKEW // 5 - AT_SKEW // 6 - GENELENGTH // 7 - CAIEXT --- 0.080871806 0.31413475 0.32065532 -0.112988345 0.18848054 0.13877165 NaN