AdditionalInfoFile = "" ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 Looking for randomclass.txt... Loading sequence... Loaded... Getting seq... Got NC_002695 5361 CDS features found CodonUsage sphere 0.034121826 0.021807708 0.011151258 0.01904638 0.008133177 0.022936294 0.015210057 0.009091634 0.0029090238 0.016173499 0.0018851322 0.009416313 0.005466572 0.02401378 0.024500487 0.02967541 0.014765103 0.009418183 0.029674161 0.012830116 0.008464088 0.0056304694 0.022722542 0.0072819074 0.003911727 0.021127814 0.006286682 0.020402428 0.003901133 0.010559856 0.051312987 0.011450387 0.03947124 0.019323695 0.018949162 0.032917835 0.02078631 0.025458943 0.03265049 0.015482388 0.008913403 0.02826265 0.011951427 0.024327865 0.010938129 0.014840509 0.026394343 0.018116588 0.0 0.012392641 0.0 0.016531207 0.008194249 0.0090523735 0.008865419 0.008733303 1.8695526E-6 0.006486724 0.015387041 0.0053126453 0.013812878 0.015930457 0.01298155 0.02225453 0.4 255 0 0 aaa:0.034 aac:0.022 aag:0.011 aat:0.019 aca:0.008 acc:0.023 acg:0.015 act:0.009 aga:0.003 agc:0.016 agg:0.002 agt:0.009 ata:0.005 atc:0.024 atg:0.025 att:0.030 caa:0.015 cac:0.009 cag:0.030 cat:0.013 cca:0.008 ccc:0.006 ccg:0.023 cct:0.007 cga:0.004 cgc:0.021 cgg:0.006 cgt:0.020 cta:0.004 ctc:0.011 ctg:0.051 ctt:0.011 gaa:0.039 gac:0.019 gag:0.019 gat:0.033 gca:0.021 gcc:0.025 gcg:0.033 gct:0.015 gga:0.009 ggc:0.028 ggg:0.012 ggt:0.024 gta:0.011 gtc:0.015 gtg:0.026 gtt:0.018 taa:0.000 tac:0.012 tag:0.000 tat:0.017 tca:0.008 tcc:0.009 tcg:0.009 tct:0.009 tga:0.000 tgc:0.006 tgg:0.015 tgt:0.005 tta:0.014 ttc:0.016 ttg:0.013 ttt:0.022 Number of points = 5361 Iteration 0 First 2680 genes (50%) aaa:0.035 aac:0.025 aag:0.010 aat:0.015 aca:0.005 acc:0.027 acg:0.015 act:0.009 aga:0.001 agc:0.017 agg:0.001 agt:0.007 ata:0.002 atc:0.027 atg:0.026 att:0.029 caa:0.012 cac:0.010 cag:0.031 cat:0.012 cca:0.007 ccc:0.004 ccg:0.027 cct:0.006 cga:0.002 cgc:0.023 cgg:0.005 cgt:0.023 cta:0.002 ctc:0.010 ctg:0.058 ctt:0.009 gaa:0.042 gac:0.022 gag:0.018 gat:0.033 gca:0.019 gcc:0.027 gcg:0.037 gct:0.015 gga:0.006 ggc:0.033 ggg:0.011 ggt:0.027 gta:0.010 gtc:0.015 gtg:0.030 gtt:0.018 taa:0.000 tac:0.014 tag:0.000 tat:0.015 tca:0.006 tcc:0.010 tcg:0.009 tct:0.008 tga:0.000 tgc:0.006 tgg:0.015 tgt:0.004 tta:0.009 ttc:0.018 ttg:0.011 ttt:0.020 CodonUsageIt0 sphere 0.034789756 0.024820097 0.01032279 0.015258222 0.0053211446 0.026628844 0.014981813 0.00851194 0.001008947 0.016946107 7.178238E-4 0.007347447 0.0021955108 0.026788594 0.025605185 0.028863242 0.012414252 0.010196671 0.03136459 0.011542985 0.007318019 0.004362645 0.026640406 0.0057299784 0.0022228365 0.023461172 0.004774632 0.022807458 0.002478226 0.010003289 0.058473736 0.008602325 0.041579127 0.021831091 0.01845217 0.033213276 0.01936758 0.027077617 0.036887523 0.014795788 0.0063584684 0.03306824 0.01114361 0.026822226 0.010346962 0.015190959 0.029695624 0.017708072 0.0 0.013622887 0.0 0.015113186 0.005786732 0.00971532 0.008754717 0.007998007 3.1529596E-6 0.006309072 0.014625528 0.0043794606 0.009189826 0.017985532 0.010659105 0.019818453 0.2 0 255 0 Iteration 1 First 1340 genes (25%) aaa:0.038 aac:0.028 aag:0.010 aat:0.012 aca:0.004 acc:0.029 acg:0.013 act:0.009 aga:0.000 agc:0.017 agg:0.000 agt:0.005 ata:0.001 atc:0.031 atg:0.026 att:0.028 caa:0.010 cac:0.011 cag:0.030 cat:0.010 cca:0.007 ccc:0.003 ccg:0.029 cct:0.005 cga:0.001 cgc:0.023 cgg:0.003 cgt:0.025 cta:0.002 ctc:0.009 ctg:0.062 ctt:0.007 gaa:0.045 gac:0.024 gag:0.018 gat:0.033 gca:0.019 gcc:0.025 gcg:0.038 gct:0.016 gga:0.004 ggc:0.036 ggg:0.009 ggt:0.030 gta:0.011 gtc:0.015 gtg:0.030 gtt:0.019 taa:0.000 tac:0.015 tag:0.000 tat:0.014 tca:0.004 tcc:0.010 tcg:0.008 tct:0.009 tga:0.000 tgc:0.006 tgg:0.013 tgt:0.004 tta:0.007 ttc:0.021 ttg:0.009 ttt:0.018 CodonUsageIt1 sphere 0.03803113 0.028224716 0.010391571 0.012338729 0.0037127165 0.028640378 0.012814925 0.009199062 4.176806E-4 0.016725384 2.724004E-4 0.0052482476 0.0011117972 0.030642018 0.026475301 0.027899854 0.010367357 0.011495297 0.030252585 0.010369375 0.00670105 0.002786555 0.028519312 0.004804336 0.0012429529 0.023083411 0.0025605636 0.025343325 0.001757487 0.009348378 0.06162504 0.0070259124 0.04500256 0.024221439 0.018016763 0.03255891 0.018890463 0.025413947 0.037837423 0.01569228 0.004352353 0.0358943 0.009069924 0.029780425 0.011013047 0.014751995 0.029990274 0.019183042 0.0 0.015214066 0.0 0.014174909 0.0044693844 0.0102725215 0.008002518 0.0091809025 6.053342E-6 0.0064266315 0.013323406 0.004021437 0.0067050853 0.020754892 0.008793488 0.01755671 0.2 0 255 0 Iteration 2 First 643 genes (12%) aaa:0.042 aac:0.031 aag:0.011 aat:0.009 aca:0.003 acc:0.030 acg:0.010 act:0.011 aga:0.000 agc:0.015 agg:0.000 agt:0.004 ata:0.001 atc:0.034 atg:0.028 att:0.025 caa:0.008 cac:0.013 cag:0.030 cat:0.009 cca:0.006 ccc:0.002 ccg:0.030 cct:0.004 cga:0.001 cgc:0.022 cgg:0.001 cgt:0.028 cta:0.001 ctc:0.009 ctg:0.065 ctt:0.005 gaa:0.049 gac:0.028 gag:0.018 gat:0.031 gca:0.020 gcc:0.023 gcg:0.036 gct:0.018 gga:0.003 ggc:0.037 ggg:0.007 ggt:0.034 gta:0.012 gtc:0.013 gtg:0.028 gtt:0.022 taa:0.000 tac:0.017 tag:0.000 tat:0.013 tca:0.003 tcc:0.011 tcg:0.006 tct:0.011 tga:0.000 tgc:0.007 tgg:0.012 tgt:0.004 tta:0.004 ttc:0.024 ttg:0.007 ttt:0.015 CodonUsageIt2 sphere 0.042117726 0.030909905 0.011133815 0.009460454 0.0027176705 0.029680582 0.00978937 0.010698002 2.466872E-4 0.0149698015 1.4390086E-4 0.003511181 5.797149E-4 0.0343183 0.02752618 0.025186762 0.008218795 0.012992192 0.030099949 0.008708058 0.006023279 0.0016569156 0.0296518 0.0042019053 6.413867E-4 0.022160733 0.0010895351 0.02837725 0.0011306497 0.008506597 0.064607374 0.0054476755 0.049053747 0.027772866 0.017798482 0.03148962 0.019554071 0.022962466 0.036456257 0.018382307 0.002873906 0.0372621 0.006693446 0.034125064 0.012091784 0.013148428 0.027879765 0.022222405 0.0 0.016902184 0.0 0.012708502 0.0034083948 0.011359945 0.0061836257 0.011047475 1.233436E-5 0.0065783253 0.012227462 0.0037619798 0.0044321464 0.023755977 0.006541322 0.014809455 0.2 0 255 0 Iteration 3 First 321 genes (6%) aaa:0.046 aac:0.034 aag:0.011 aat:0.007 aca:0.002 acc:0.031 acg:0.007 act:0.014 aga:0.000 agc:0.013 agg:0.000 agt:0.002 ata:0.000 atc:0.038 atg:0.027 att:0.022 caa:0.007 cac:0.014 cag:0.030 cat:0.007 cca:0.006 ccc:0.001 ccg:0.030 cct:0.004 cga:0.000 cgc:0.019 cgg:0.000 cgt:0.032 cta:0.001 ctc:0.007 ctg:0.067 ctt:0.004 gaa:0.053 gac:0.032 gag:0.017 gat:0.030 gca:0.022 gcc:0.019 gcg:0.034 gct:0.023 gga:0.002 ggc:0.037 ggg:0.004 ggt:0.040 gta:0.014 gtc:0.011 gtg:0.024 gtt:0.028 taa:0.000 tac:0.019 tag:0.000 tat:0.011 tca:0.003 tcc:0.013 tcg:0.004 tct:0.014 tga:0.000 tgc:0.006 tgg:0.011 tgt:0.003 tta:0.003 ttc:0.026 ttg:0.004 ttt:0.012 CodonUsageIt3 sphere 0.046102 0.033521783 0.011442736 0.0069692032 0.0021391464 0.03084785 0.007232352 0.013607347 1.8675087E-4 0.013225357 9.3375435E-5 0.0022919425 2.461716E-4 0.038377304 0.027036434 0.021637635 0.006756986 0.01404027 0.030058403 0.006689077 0.005526128 6.960714E-4 0.0302112 0.0036246646 3.6501308E-4 0.019269295 3.3954706E-4 0.03207022 5.942073E-4 0.006892805 0.066729486 0.0042018946 0.052774098 0.031586364 0.016968863 0.029710365 0.021815898 0.018513802 0.033946216 0.023335371 0.0016722692 0.03687481 0.0039472342 0.040083528 0.014133646 0.010712709 0.023810737 0.027842857 0.0 0.018751485 0.0 0.011154121 0.0026909104 0.012597196 0.00429527 0.01378561 8.488676E-6 0.006162779 0.011298428 0.0032936062 0.0030219688 0.025822552 0.0044395775 0.0119265895 0.2 0 255 0 Iteration 4 First 160 genes (3%) aaa:0.052 aac:0.033 aag:0.012 aat:0.005 aca:0.001 acc:0.031 acg:0.005 act:0.017 aga:0.000 agc:0.012 agg:0.000 agt:0.001 ata:0.000 atc:0.043 atg:0.026 att:0.018 caa:0.005 cac:0.014 cag:0.030 cat:0.004 cca:0.005 ccc:0.000 ccg:0.031 cct:0.003 cga:0.000 cgc:0.018 cgg:0.000 cgt:0.036 cta:0.000 ctc:0.005 ctg:0.068 ctt:0.003 gaa:0.059 gac:0.036 gag:0.016 gat:0.026 gca:0.024 gcc:0.014 gcg:0.031 gct:0.030 gga:0.001 ggc:0.036 ggg:0.002 ggt:0.044 gta:0.017 gtc:0.008 gtg:0.020 gtt:0.034 taa:0.000 tac:0.020 tag:0.000 tat:0.009 tca:0.002 tcc:0.014 tcg:0.003 tct:0.016 tga:0.000 tgc:0.005 tgg:0.009 tgt:0.003 tta:0.002 ttc:0.026 ttg:0.003 ttt:0.009 CodonUsageIt4 sphere 0.051933475 0.03343124 0.012047967 0.0052195387 0.0014592259 0.030980488 0.0051259985 0.016668849 1.6837222E-4 0.011917011 3.7416048E-5 0.0011973135 9.354012E-5 0.043327782 0.025798365 0.017566834 0.005331787 0.014124558 0.030344415 0.0044712177 0.004658298 3.1803641E-4 0.03056891 0.0033861522 1.4966419E-4 0.017772622 1.4966419E-4 0.03616261 2.2449628E-4 0.0051259985 0.068041086 0.0034422765 0.059472807 0.03588199 0.01580828 0.02574224 0.024413971 0.013881354 0.031392064 0.030400539 8.792771E-4 0.036143903 0.0021327147 0.044225767 0.017024301 0.008343779 0.019643426 0.03436664 0.0 0.019531177 0.0 0.008624399 0.0017024302 0.013675566 0.0026191233 0.016182441 0.0 0.005313079 0.008755355 0.003105532 0.0017398462 0.026097693 0.0026752474 0.008979851 0.2 0 255 0 Iteration 5 First 53 genes (1%) aaa:0.060 aac:0.037 aag:0.012 aat:0.003 aca:0.001 acc:0.031 acg:0.002 act:0.022 aga:0.000 agc:0.010 agg:0.000 agt:0.000 ata:0.000 atc:0.049 atg:0.024 att:0.011 caa:0.004 cac:0.015 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.029 cct:0.003 cga:0.000 cgc:0.015 cgg:0.000 cgt:0.037 cta:0.000 ctc:0.003 ctg:0.069 ctt:0.002 gaa:0.061 gac:0.042 gag:0.014 gat:0.019 gca:0.026 gcc:0.008 gcg:0.024 gct:0.046 gga:0.000 ggc:0.035 ggg:0.001 ggt:0.051 gta:0.022 gtc:0.005 gtg:0.013 gtt:0.045 taa:0.000 tac:0.022 tag:0.000 tat:0.005 tca:0.001 tcc:0.015 tcg:0.001 tct:0.019 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.002 tta:0.001 ttc:0.028 ttg:0.001 ttt:0.005 CodonUsageIt5 sphere 0.059618246 0.037183937 0.012084779 0.0029127416 0.0011774913 0.03129648 0.0021070899 0.02187655 0.0 0.010473476 0.0 3.7183936E-4 6.197323E-5 0.048648983 0.024293505 0.011403074 0.0035944472 0.0148116015 0.031234507 0.003284581 0.0037183936 1.8591968E-4 0.029251363 0.0025409022 6.197323E-5 0.015493307 0.0 0.036564205 0.0 0.0027887952 0.0689762 0.0018591968 0.060547844 0.041893903 0.01363411 0.018591968 0.026152702 0.008428359 0.024417453 0.046046108 3.0986613E-4 0.035262767 8.0565194E-4 0.0506941 0.02169063 0.0045240456 0.012580565 0.044620723 0.0 0.021566683 0.0 0.005453644 8.0565194E-4 0.015431333 8.676252E-4 0.0192117 0.0 0.004400099 0.0068790284 0.0021070899 9.295984E-4 0.027702034 0.0012394645 0.0053296974 0.2 0 255 0 Iteration 6 First 53 genes (1%) aaa:0.061 aac:0.038 aag:0.013 aat:0.002 aca:0.001 acc:0.030 acg:0.002 act:0.023 aga:0.000 agc:0.010 agg:0.000 agt:0.000 ata:0.000 atc:0.048 atg:0.023 att:0.011 caa:0.003 cac:0.014 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.029 cct:0.003 cga:0.000 cgc:0.016 cgg:0.000 cgt:0.037 cta:0.000 ctc:0.002 ctg:0.069 ctt:0.002 gaa:0.060 gac:0.041 gag:0.013 gat:0.018 gca:0.027 gcc:0.008 gcg:0.023 gct:0.048 gga:0.000 ggc:0.035 ggg:0.001 ggt:0.051 gta:0.023 gtc:0.004 gtg:0.012 gtt:0.047 taa:0.000 tac:0.021 tag:0.000 tat:0.005 tca:0.001 tcc:0.016 tcg:0.001 tct:0.020 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.002 tta:0.001 ttc:0.027 ttg:0.001 ttt:0.005 CodonUsageIt6 sphere 0.06063618 0.038104706 0.012988734 0.0024519549 0.0011265739 0.030483764 0.0020543407 0.023326706 0.0 0.010072896 0.0 4.6388336E-4 6.626905E-5 0.047978792 0.023459245 0.0108018555 0.0033797217 0.014314115 0.031013917 0.0033797217 0.003777336 1.325381E-4 0.029224653 0.0027833001 6.626905E-5 0.016434725 0.0 0.036911864 0.0 0.0024519549 0.06918489 0.0017229953 0.060039762 0.041020542 0.013452617 0.01815772 0.027037773 0.0078197485 0.023194168 0.04751491 3.3134528E-4 0.034857523 6.6269055E-4 0.051358517 0.022995362 0.0043074884 0.011530815 0.04698476 0.0 0.020874752 0.0 0.0047051026 7.2895957E-4 0.015705766 5.301524E-4 0.019946985 0.0 0.0043074884 0.0069582504 0.0018555335 0.0011265739 0.026772697 0.0011265739 0.0053015244 0.2 0 255 0 Iteration 7 First 53 genes (1%) aaa:0.061 aac:0.038 aag:0.013 aat:0.002 aca:0.001 acc:0.030 acg:0.002 act:0.023 aga:0.000 agc:0.010 agg:0.000 agt:0.000 ata:0.000 atc:0.048 atg:0.023 att:0.011 caa:0.003 cac:0.014 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.029 cct:0.003 cga:0.000 cgc:0.016 cgg:0.000 cgt:0.037 cta:0.000 ctc:0.002 ctg:0.069 ctt:0.002 gaa:0.060 gac:0.041 gag:0.013 gat:0.018 gca:0.027 gcc:0.008 gcg:0.023 gct:0.048 gga:0.000 ggc:0.035 ggg:0.001 ggt:0.051 gta:0.023 gtc:0.004 gtg:0.012 gtt:0.047 taa:0.000 tac:0.021 tag:0.000 tat:0.005 tca:0.001 tcc:0.016 tcg:0.001 tct:0.020 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.002 tta:0.001 ttc:0.027 ttg:0.001 ttt:0.005 CodonUsageIt7 sphere 0.06063618 0.038104706 0.012988734 0.0024519549 0.0011265739 0.030483764 0.0020543407 0.023326706 0.0 0.010072896 0.0 4.6388336E-4 6.626905E-5 0.047978792 0.023459245 0.0108018555 0.0033797217 0.014314115 0.031013917 0.0033797217 0.003777336 1.325381E-4 0.029224653 0.0027833001 6.626905E-5 0.016434725 0.0 0.036911864 0.0 0.0024519549 0.06918489 0.0017229953 0.060039762 0.041020542 0.013452617 0.01815772 0.027037773 0.0078197485 0.023194168 0.04751491 3.3134528E-4 0.034857523 6.6269055E-4 0.051358517 0.022995362 0.0043074884 0.011530815 0.04698476 0.0 0.020874752 0.0 0.0047051026 7.2895957E-4 0.015705766 5.301524E-4 0.019946985 0.0 0.0043074884 0.0069582504 0.0018555335 0.0011265739 0.026772697 0.0011265739 0.0053015244 0.2 0 255 0 Iteration 8 First 53 genes (1%) aaa:0.061 aac:0.038 aag:0.013 aat:0.002 aca:0.001 acc:0.030 acg:0.002 act:0.023 aga:0.000 agc:0.010 agg:0.000 agt:0.000 ata:0.000 atc:0.048 atg:0.023 att:0.011 caa:0.003 cac:0.014 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.029 cct:0.003 cga:0.000 cgc:0.016 cgg:0.000 cgt:0.037 cta:0.000 ctc:0.002 ctg:0.069 ctt:0.002 gaa:0.060 gac:0.041 gag:0.013 gat:0.018 gca:0.027 gcc:0.008 gcg:0.023 gct:0.048 gga:0.000 ggc:0.035 ggg:0.001 ggt:0.051 gta:0.023 gtc:0.004 gtg:0.012 gtt:0.047 taa:0.000 tac:0.021 tag:0.000 tat:0.005 tca:0.001 tcc:0.016 tcg:0.001 tct:0.020 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.002 tta:0.001 ttc:0.027 ttg:0.001 ttt:0.005 CodonUsageIt8 sphere 0.06063618 0.038104706 0.012988734 0.0024519549 0.0011265739 0.030483764 0.0020543407 0.023326706 0.0 0.010072896 0.0 4.6388336E-4 6.626905E-5 0.047978792 0.023459245 0.0108018555 0.0033797217 0.014314115 0.031013917 0.0033797217 0.003777336 1.325381E-4 0.029224653 0.0027833001 6.626905E-5 0.016434725 0.0 0.036911864 0.0 0.0024519549 0.06918489 0.0017229953 0.060039762 0.041020542 0.013452617 0.01815772 0.027037773 0.0078197485 0.023194168 0.04751491 3.3134528E-4 0.034857523 6.6269055E-4 0.051358517 0.022995362 0.0043074884 0.011530815 0.04698476 0.0 0.020874752 0.0 0.0047051026 7.2895957E-4 0.015705766 5.301524E-4 0.019946985 0.0 0.0043074884 0.0069582504 0.0018555335 0.0011265739 0.026772697 0.0011265739 0.0053015244 0.2 0 255 0 Iteration 9 First 53 genes (1%) aaa:0.061 aac:0.038 aag:0.013 aat:0.002 aca:0.001 acc:0.030 acg:0.002 act:0.023 aga:0.000 agc:0.010 agg:0.000 agt:0.000 ata:0.000 atc:0.048 atg:0.023 att:0.011 caa:0.003 cac:0.014 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.029 cct:0.003 cga:0.000 cgc:0.016 cgg:0.000 cgt:0.037 cta:0.000 ctc:0.002 ctg:0.069 ctt:0.002 gaa:0.060 gac:0.041 gag:0.013 gat:0.018 gca:0.027 gcc:0.008 gcg:0.023 gct:0.048 gga:0.000 ggc:0.035 ggg:0.001 ggt:0.051 gta:0.023 gtc:0.004 gtg:0.012 gtt:0.047 taa:0.000 tac:0.021 tag:0.000 tat:0.005 tca:0.001 tcc:0.016 tcg:0.001 tct:0.020 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.002 tta:0.001 ttc:0.027 ttg:0.001 ttt:0.005 CodonUsageIt9 sphere 0.06063618 0.038104706 0.012988734 0.0024519549 0.0011265739 0.030483764 0.0020543407 0.023326706 0.0 0.010072896 0.0 4.6388336E-4 6.626905E-5 0.047978792 0.023459245 0.0108018555 0.0033797217 0.014314115 0.031013917 0.0033797217 0.003777336 1.325381E-4 0.029224653 0.0027833001 6.626905E-5 0.016434725 0.0 0.036911864 0.0 0.0024519549 0.06918489 0.0017229953 0.060039762 0.041020542 0.013452617 0.01815772 0.027037773 0.0078197485 0.023194168 0.04751491 3.3134528E-4 0.034857523 6.6269055E-4 0.051358517 0.022995362 0.0043074884 0.011530815 0.04698476 0.0 0.020874752 0.0 0.0047051026 7.2895957E-4 0.015705766 5.301524E-4 0.019946985 0.0 0.0043074884 0.0069582504 0.0018555335 0.0011265739 0.026772697 0.0011265739 0.0053015244 0.2 0 255 0 Iteration 10 First 53 genes (1%) aaa:0.061 aac:0.038 aag:0.013 aat:0.002 aca:0.001 acc:0.030 acg:0.002 act:0.023 aga:0.000 agc:0.010 agg:0.000 agt:0.000 ata:0.000 atc:0.048 atg:0.023 att:0.011 caa:0.003 cac:0.014 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.029 cct:0.003 cga:0.000 cgc:0.016 cgg:0.000 cgt:0.037 cta:0.000 ctc:0.002 ctg:0.069 ctt:0.002 gaa:0.060 gac:0.041 gag:0.013 gat:0.018 gca:0.027 gcc:0.008 gcg:0.023 gct:0.048 gga:0.000 ggc:0.035 ggg:0.001 ggt:0.051 gta:0.023 gtc:0.004 gtg:0.012 gtt:0.047 taa:0.000 tac:0.021 tag:0.000 tat:0.005 tca:0.001 tcc:0.016 tcg:0.001 tct:0.020 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.002 tta:0.001 ttc:0.027 ttg:0.001 ttt:0.005 CodonUsageIt10 sphere 0.06063618 0.038104706 0.012988734 0.0024519549 0.0011265739 0.030483764 0.0020543407 0.023326706 0.0 0.010072896 0.0 4.6388336E-4 6.626905E-5 0.047978792 0.023459245 0.0108018555 0.0033797217 0.014314115 0.031013917 0.0033797217 0.003777336 1.325381E-4 0.029224653 0.0027833001 6.626905E-5 0.016434725 0.0 0.036911864 0.0 0.0024519549 0.06918489 0.0017229953 0.060039762 0.041020542 0.013452617 0.01815772 0.027037773 0.0078197485 0.023194168 0.04751491 3.3134528E-4 0.034857523 6.6269055E-4 0.051358517 0.022995362 0.0043074884 0.011530815 0.04698476 0.0 0.020874752 0.0 0.0047051026 7.2895957E-4 0.015705766 5.301524E-4 0.019946985 0.0 0.0043074884 0.0069582504 0.0018555335 0.0011265739 0.026772697 0.0011265739 0.0053015244 0.2 0 255 0 Iteration 11 First 53 genes (1%) aaa:0.061 aac:0.038 aag:0.013 aat:0.002 aca:0.001 acc:0.030 acg:0.002 act:0.023 aga:0.000 agc:0.010 agg:0.000 agt:0.000 ata:0.000 atc:0.048 atg:0.023 att:0.011 caa:0.003 cac:0.014 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.029 cct:0.003 cga:0.000 cgc:0.016 cgg:0.000 cgt:0.037 cta:0.000 ctc:0.002 ctg:0.069 ctt:0.002 gaa:0.060 gac:0.041 gag:0.013 gat:0.018 gca:0.027 gcc:0.008 gcg:0.023 gct:0.048 gga:0.000 ggc:0.035 ggg:0.001 ggt:0.051 gta:0.023 gtc:0.004 gtg:0.012 gtt:0.047 taa:0.000 tac:0.021 tag:0.000 tat:0.005 tca:0.001 tcc:0.016 tcg:0.001 tct:0.020 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.002 tta:0.001 ttc:0.027 ttg:0.001 ttt:0.005 CodonUsageIt11 sphere 0.06063618 0.038104706 0.012988734 0.0024519549 0.0011265739 0.030483764 0.0020543407 0.023326706 0.0 0.010072896 0.0 4.6388336E-4 6.626905E-5 0.047978792 0.023459245 0.0108018555 0.0033797217 0.014314115 0.031013917 0.0033797217 0.003777336 1.325381E-4 0.029224653 0.0027833001 6.626905E-5 0.016434725 0.0 0.036911864 0.0 0.0024519549 0.06918489 0.0017229953 0.060039762 0.041020542 0.013452617 0.01815772 0.027037773 0.0078197485 0.023194168 0.04751491 3.3134528E-4 0.034857523 6.6269055E-4 0.051358517 0.022995362 0.0043074884 0.011530815 0.04698476 0.0 0.020874752 0.0 0.0047051026 7.2895957E-4 0.015705766 5.301524E-4 0.019946985 0.0 0.0043074884 0.0069582504 0.0018555335 0.0011265739 0.026772697 0.0011265739 0.0053015244 0.2 0 255 0 Iteration 12 First 53 genes (1%) aaa:0.061 aac:0.038 aag:0.013 aat:0.002 aca:0.001 acc:0.030 acg:0.002 act:0.023 aga:0.000 agc:0.010 agg:0.000 agt:0.000 ata:0.000 atc:0.048 atg:0.023 att:0.011 caa:0.003 cac:0.014 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.029 cct:0.003 cga:0.000 cgc:0.016 cgg:0.000 cgt:0.037 cta:0.000 ctc:0.002 ctg:0.069 ctt:0.002 gaa:0.060 gac:0.041 gag:0.013 gat:0.018 gca:0.027 gcc:0.008 gcg:0.023 gct:0.048 gga:0.000 ggc:0.035 ggg:0.001 ggt:0.051 gta:0.023 gtc:0.004 gtg:0.012 gtt:0.047 taa:0.000 tac:0.021 tag:0.000 tat:0.005 tca:0.001 tcc:0.016 tcg:0.001 tct:0.020 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.002 tta:0.001 ttc:0.027 ttg:0.001 ttt:0.005 CodonUsageIt12 sphere 0.06063618 0.038104706 0.012988734 0.0024519549 0.0011265739 0.030483764 0.0020543407 0.023326706 0.0 0.010072896 0.0 4.6388336E-4 6.626905E-5 0.047978792 0.023459245 0.0108018555 0.0033797217 0.014314115 0.031013917 0.0033797217 0.003777336 1.325381E-4 0.029224653 0.0027833001 6.626905E-5 0.016434725 0.0 0.036911864 0.0 0.0024519549 0.06918489 0.0017229953 0.060039762 0.041020542 0.013452617 0.01815772 0.027037773 0.0078197485 0.023194168 0.04751491 3.3134528E-4 0.034857523 6.6269055E-4 0.051358517 0.022995362 0.0043074884 0.011530815 0.04698476 0.0 0.020874752 0.0 0.0047051026 7.2895957E-4 0.015705766 5.301524E-4 0.019946985 0.0 0.0043074884 0.0069582504 0.0018555335 0.0011265739 0.026772697 0.0011265739 0.0053015244 0.2 0 255 0 Iteration 13 First 53 genes (1%) aaa:0.061 aac:0.038 aag:0.013 aat:0.002 aca:0.001 acc:0.030 acg:0.002 act:0.023 aga:0.000 agc:0.010 agg:0.000 agt:0.000 ata:0.000 atc:0.048 atg:0.023 att:0.011 caa:0.003 cac:0.014 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.029 cct:0.003 cga:0.000 cgc:0.016 cgg:0.000 cgt:0.037 cta:0.000 ctc:0.002 ctg:0.069 ctt:0.002 gaa:0.060 gac:0.041 gag:0.013 gat:0.018 gca:0.027 gcc:0.008 gcg:0.023 gct:0.048 gga:0.000 ggc:0.035 ggg:0.001 ggt:0.051 gta:0.023 gtc:0.004 gtg:0.012 gtt:0.047 taa:0.000 tac:0.021 tag:0.000 tat:0.005 tca:0.001 tcc:0.016 tcg:0.001 tct:0.020 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.002 tta:0.001 ttc:0.027 ttg:0.001 ttt:0.005 CodonUsageIt13 sphere 0.06063618 0.038104706 0.012988734 0.0024519549 0.0011265739 0.030483764 0.0020543407 0.023326706 0.0 0.010072896 0.0 4.6388336E-4 6.626905E-5 0.047978792 0.023459245 0.0108018555 0.0033797217 0.014314115 0.031013917 0.0033797217 0.003777336 1.325381E-4 0.029224653 0.0027833001 6.626905E-5 0.016434725 0.0 0.036911864 0.0 0.0024519549 0.06918489 0.0017229953 0.060039762 0.041020542 0.013452617 0.01815772 0.027037773 0.0078197485 0.023194168 0.04751491 3.3134528E-4 0.034857523 6.6269055E-4 0.051358517 0.022995362 0.0043074884 0.011530815 0.04698476 0.0 0.020874752 0.0 0.0047051026 7.2895957E-4 0.015705766 5.301524E-4 0.019946985 0.0 0.0043074884 0.0069582504 0.0018555335 0.0011265739 0.026772697 0.0011265739 0.0053015244 0.2 0 255 0 Iteration 14 First 53 genes (1%) aaa:0.061 aac:0.038 aag:0.013 aat:0.002 aca:0.001 acc:0.030 acg:0.002 act:0.023 aga:0.000 agc:0.010 agg:0.000 agt:0.000 ata:0.000 atc:0.048 atg:0.023 att:0.011 caa:0.003 cac:0.014 cag:0.031 cat:0.003 cca:0.004 ccc:0.000 ccg:0.029 cct:0.003 cga:0.000 cgc:0.016 cgg:0.000 cgt:0.037 cta:0.000 ctc:0.002 ctg:0.069 ctt:0.002 gaa:0.060 gac:0.041 gag:0.013 gat:0.018 gca:0.027 gcc:0.008 gcg:0.023 gct:0.048 gga:0.000 ggc:0.035 ggg:0.001 ggt:0.051 gta:0.023 gtc:0.004 gtg:0.012 gtt:0.047 taa:0.000 tac:0.021 tag:0.000 tat:0.005 tca:0.001 tcc:0.016 tcg:0.001 tct:0.020 tga:0.000 tgc:0.004 tgg:0.007 tgt:0.002 tta:0.001 ttc:0.027 ttg:0.001 ttt:0.005 CodonUsageIt14 sphere 0.06063618 0.038104706 0.012988734 0.0024519549 0.0011265739 0.030483764 0.0020543407 0.023326706 0.0 0.010072896 0.0 4.6388336E-4 6.626905E-5 0.047978792 0.023459245 0.0108018555 0.0033797217 0.014314115 0.031013917 0.0033797217 0.003777336 1.325381E-4 0.029224653 0.0027833001 6.626905E-5 0.016434725 0.0 0.036911864 0.0 0.0024519549 0.06918489 0.0017229953 0.060039762 0.041020542 0.013452617 0.01815772 0.027037773 0.0078197485 0.023194168 0.04751491 3.3134528E-4 0.034857523 6.6269055E-4 0.051358517 0.022995362 0.0043074884 0.011530815 0.04698476 0.0 0.020874752 0.0 0.0047051026 7.2895957E-4 0.015705766 5.301524E-4 0.019946985 0.0 0.0043074884 0.0069582504 0.0018555335 0.0011265739 0.026772697 0.0011265739 0.0053015244 0.2 0 255 0 aaa:1.000 aac:1.000 aag:0.214 aat:0.064 aca:0.037 acc:1.000 acg:0.067 act:0.765 aga:0.000 agc:0.505 agg:0.000 agt:0.023 ata:0.001 atc:1.000 atg:1.000 att:0.225 caa:0.109 cac:1.000 cag:1.000 cat:0.236 cca:0.129 ccc:0.005 ccg:1.000 cct:0.095 cga:0.002 cgc:0.445 cgg:0.000 cgt:1.000 cta:0.000 ctc:0.035 ctg:1.000 ctt:0.025 gaa:1.000 gac:1.000 gag:0.224 gat:0.443 gca:0.569 gcc:0.165 gcg:0.488 gct:1.000 gga:0.006 ggc:0.679 ggg:0.013 ggt:1.000 gta:0.489 gtc:0.092 gtg:0.245 gtt:1.000 taa:0.000 tac:1.000 tag:0.000 tat:0.225 tca:0.037 tcc:0.787 tcg:0.027 tct:1.000 tga:0.000 tgc:1.000 tgg:1.000 tgt:0.431 tta:0.016 ttc:1.000 ttg:0.016 ttt:0.198 ttt:0.198 ttc:1.000 ttg:0.016 tta:0.016 tct:1.000 tcc:0.787 tcg:0.027 tca:0.037 tgt:0.431 tgc:1.000 tgg:1.000 tga:0.000 tat:0.225 tac:1.000 tag:0.000 taa:0.000 ctt:0.025 ctc:0.035 ctg:1.000 cta:0.000 cct:0.095 ccc:0.005 ccg:1.000 cca:0.129 cgt:1.000 cgc:0.445 cgg:0.000 cga:0.002 cat:0.236 cac:1.000 cag:1.000 caa:0.109 gtt:1.000 gtc:0.092 gtg:0.245 gta:0.489 gct:1.000 gcc:0.165 gcg:0.488 gca:0.569 ggt:1.000 ggc:0.679 ggg:0.013 gga:0.006 gat:0.443 gac:1.000 gag:0.224 gaa:1.000 att:0.225 atc:1.000 atg:1.000 ata:0.001 act:0.765 acc:1.000 acg:0.067 aca:0.037 agt:0.023 agc:0.505 agg:0.000 aga:0.000 aat:0.064 aac:1.000 aag:0.214 aaa:1.000 // 0 - CAICLASS // 1 - STRAND // 2 - GC_CONT // 3 - GC_CONT3 // 4 - GC_SKEW // 5 - AT_SKEW // 6 - GENELENGTH // 7 - CAIEXT --- 0.038977433 0.38936955 0.40973702 -0.115920685 0.08476961 0.18261157 NaN