AdditionalInfoFile = "" ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 Looking for randomclass.txt... Loading sequence... Loaded... Getting seq... Got NC_002677 2720 CDS features found CodonUsage sphere 0.009270151 0.017630452 0.015701521 0.008782817 0.009753884 0.026520098 0.015192581 0.011170274 0.00450484 0.014540802 0.0058492096 0.0077229254 0.005726776 0.02772283 0.01689825 0.011566383 0.012731904 0.015690718 0.02045963 0.00999275 0.0115927905 0.012755911 0.024724403 0.00839391 0.013381283 0.022462983 0.021262651 0.013713774 0.009513819 0.013884221 0.035048444 0.009132113 0.018827181 0.031990003 0.023928585 0.020645682 0.018389061 0.035380937 0.031845964 0.021424696 0.012363402 0.0308821 0.014566009 0.022609422 0.009860714 0.025910331 0.033131517 0.015170975 0.0022974322 0.0138074 0.00276196 0.008643579 0.0087216 0.011529173 0.019361328 0.0065742093 0.004836131 0.011025034 0.016662985 0.0070543415 0.0059788455 0.018938811 0.021834008 0.009751484 0.4 255 0 0 aaa:0.009 aac:0.018 aag:0.016 aat:0.009 aca:0.010 acc:0.027 acg:0.015 act:0.011 aga:0.005 agc:0.015 agg:0.006 agt:0.008 ata:0.006 atc:0.028 atg:0.017 att:0.012 caa:0.013 cac:0.016 cag:0.020 cat:0.010 cca:0.012 ccc:0.013 ccg:0.025 cct:0.008 cga:0.013 cgc:0.022 cgg:0.021 cgt:0.014 cta:0.010 ctc:0.014 ctg:0.035 ctt:0.009 gaa:0.019 gac:0.032 gag:0.024 gat:0.021 gca:0.018 gcc:0.035 gcg:0.032 gct:0.021 gga:0.012 ggc:0.031 ggg:0.015 ggt:0.023 gta:0.010 gtc:0.026 gtg:0.033 gtt:0.015 taa:0.002 tac:0.014 tag:0.003 tat:0.009 tca:0.009 tcc:0.012 tcg:0.019 tct:0.007 tga:0.005 tgc:0.011 tgg:0.017 tgt:0.007 tta:0.006 ttc:0.019 ttg:0.022 ttt:0.010 Number of points = 2720 Iteration 0 First 1360 genes (50%) aaa:0.009 aac:0.019 aag:0.019 aat:0.008 aca:0.007 acc:0.030 acg:0.014 act:0.010 aga:0.002 agc:0.013 agg:0.003 agt:0.006 ata:0.004 atc:0.033 atg:0.018 att:0.011 caa:0.010 cac:0.015 cag:0.023 cat:0.008 cca:0.009 ccc:0.013 ccg:0.025 cct:0.006 cga:0.009 cgc:0.024 cgg:0.021 cgt:0.013 cta:0.008 ctc:0.014 ctg:0.041 ctt:0.008 gaa:0.021 gac:0.039 gag:0.031 gat:0.021 gca:0.017 gcc:0.043 gcg:0.037 gct:0.021 gga:0.011 ggc:0.036 ggg:0.015 ggt:0.023 gta:0.009 gtc:0.030 gtg:0.039 gtt:0.014 taa:0.000 tac:0.015 tag:0.000 tat:0.008 tca:0.006 tcc:0.011 tcg:0.018 tct:0.005 tga:0.000 tgc:0.007 tgg:0.014 tgt:0.003 tta:0.004 ttc:0.021 ttg:0.023 ttt:0.008 CodonUsageIt0 sphere 0.00884416 0.019007698 0.018644327 0.007537759 0.00687807 0.030088311 0.013593921 0.009999156 0.0017800791 0.012765525 0.0034347093 0.005703607 0.004126842 0.03272923 0.018419385 0.0108448565 0.010299802 0.014575885 0.0226003 0.007963853 0.008511071 0.012704963 0.02542074 0.0064303465 0.008671126 0.023569286 0.020580137 0.012538419 0.008130398 0.014180072 0.04147606 0.00767186 0.021384742 0.03863399 0.03062904 0.021047328 0.017024305 0.042799763 0.036570568 0.020809406 0.010892441 0.03578327 0.0148592265 0.023484932 0.0090518 0.02973143 0.039068736 0.013669623 1.4924114E-4 0.0148073165 2.1845443E-4 0.007795146 0.005842034 0.011180108 0.018302588 0.004581054 3.871618E-4 0.006573099 0.0140546225 0.0033049344 0.0043474594 0.021438815 0.02348277 0.008372644 0.2 0 255 0 Iteration 1 First 680 genes (25%) aaa:0.009 aac:0.020 aag:0.022 aat:0.007 aca:0.006 acc:0.031 acg:0.013 act:0.010 aga:0.001 agc:0.012 agg:0.003 agt:0.005 ata:0.004 atc:0.035 atg:0.019 att:0.010 caa:0.009 cac:0.015 cag:0.023 cat:0.007 cca:0.007 ccc:0.013 ccg:0.025 cct:0.006 cga:0.008 cgc:0.025 cgg:0.020 cgt:0.013 cta:0.007 ctc:0.014 ctg:0.042 ctt:0.007 gaa:0.023 gac:0.042 gag:0.034 gat:0.020 gca:0.015 gcc:0.045 gcg:0.036 gct:0.020 gga:0.010 ggc:0.038 ggg:0.014 ggt:0.024 gta:0.008 gtc:0.031 gtg:0.040 gtt:0.013 taa:0.000 tac:0.016 tag:0.000 tat:0.007 tca:0.005 tcc:0.011 tcg:0.018 tct:0.004 tga:0.000 tgc:0.006 tgg:0.013 tgt:0.003 tta:0.003 ttc:0.023 ttg:0.022 ttt:0.008 CodonUsageIt1 sphere 0.009098991 0.02000008 0.022192366 0.0070273816 0.0058648665 0.031399965 0.01264285 0.009521358 0.0011987176 0.011983153 0.0028881854 0.005008065 0.0035197246 0.035342056 0.018922038 0.01042643 0.009296095 0.014887429 0.023198001 0.0073290723 0.007240576 0.012848 0.025249498 0.0057441904 0.007558357 0.024923673 0.020438537 0.012542287 0.0073853876 0.014159349 0.042248763 0.006910728 0.022630824 0.042128086 0.03428413 0.0203782 0.015370134 0.04466229 0.0359213 0.019750683 0.0098230485 0.038185995 0.013974312 0.023515783 0.008419181 0.030941395 0.039662268 0.012747437 4.0225423E-6 0.015832726 8.0450845E-6 0.0074296356 0.004859231 0.011061992 0.018049147 0.004086903 4.0225423E-6 0.0060137007 0.0125704445 0.00259454 0.0034754765 0.022638869 0.022288907 0.0076911007 0.2 0 255 0 Iteration 2 First 326 genes (12%) aaa:0.010 aac:0.022 aag:0.028 aat:0.007 aca:0.005 acc:0.033 acg:0.012 act:0.009 aga:0.001 agc:0.012 agg:0.002 agt:0.004 ata:0.003 atc:0.039 atg:0.020 att:0.010 caa:0.009 cac:0.016 cag:0.024 cat:0.007 cca:0.007 ccc:0.012 ccg:0.025 cct:0.005 cga:0.007 cgc:0.025 cgg:0.019 cgt:0.013 cta:0.007 ctc:0.014 ctg:0.042 ctt:0.006 gaa:0.023 gac:0.044 gag:0.039 gat:0.019 gca:0.014 gcc:0.045 gcg:0.034 gct:0.018 gga:0.009 ggc:0.040 ggg:0.013 ggt:0.023 gta:0.007 gtc:0.031 gtg:0.039 gtt:0.012 taa:0.000 tac:0.018 tag:0.000 tat:0.007 tca:0.004 tcc:0.011 tcg:0.018 tct:0.004 tga:0.000 tgc:0.006 tgg:0.012 tgt:0.002 tta:0.003 ttc:0.024 ttg:0.021 ttt:0.007 CodonUsageIt2 sphere 0.009836921 0.022156212 0.027651088 0.00690015 0.0051666973 0.032986082 0.011915381 0.00920581 9.508743E-4 0.011637691 0.0024234673 0.004030697 0.0030040897 0.038666084 0.019614939 0.010451202 0.008566284 0.0156179 0.023999058 0.0069338093 0.0065972162 0.012344536 0.024949932 0.0051162085 0.0067318534 0.02526128 0.018924924 0.012554906 0.0069506387 0.014052744 0.042023595 0.0064878236 0.022913545 0.04420303 0.038506202 0.018689308 0.013547855 0.044935122 0.034122083 0.017965633 0.008810313 0.04023124 0.013253337 0.023157576 0.007447113 0.031050675 0.038632423 0.011898551 0.0 0.0176627 8.414817E-6 0.0069506387 0.0044850972 0.0114273215 0.017586967 0.0036941045 0.0 0.005797809 0.011696596 0.0023140747 0.002802134 0.02449553 0.02066679 0.00733772 0.2 0 255 0 Iteration 3 First 163 genes (6%) aaa:0.011 aac:0.025 aag:0.034 aat:0.007 aca:0.005 acc:0.033 acg:0.012 act:0.009 aga:0.001 agc:0.011 agg:0.002 agt:0.004 ata:0.003 atc:0.042 atg:0.020 att:0.010 caa:0.008 cac:0.016 cag:0.026 cat:0.006 cca:0.006 ccc:0.011 ccg:0.024 cct:0.005 cga:0.006 cgc:0.025 cgg:0.017 cgt:0.013 cta:0.006 ctc:0.014 ctg:0.041 ctt:0.006 gaa:0.024 gac:0.045 gag:0.042 gat:0.018 gca:0.012 gcc:0.044 gcg:0.033 gct:0.018 gga:0.007 ggc:0.042 ggg:0.012 ggt:0.025 gta:0.006 gtc:0.033 gtg:0.038 gtt:0.012 taa:0.000 tac:0.019 tag:0.000 tat:0.006 tca:0.004 tcc:0.012 tcg:0.018 tct:0.003 tga:0.000 tgc:0.006 tgg:0.010 tgt:0.002 tta:0.002 ttc:0.025 ttg:0.020 ttt:0.007 CodonUsageIt3 sphere 0.010528698 0.024711983 0.03417911 0.0065608574 0.0045073265 0.033378582 0.011503254 0.009066861 6.613066E-4 0.010841948 0.0022101563 0.0035153667 0.002784449 0.041958164 0.020378685 0.010476489 0.008457763 0.01557551 0.025599526 0.0057429257 0.0055166893 0.011416241 0.024120288 0.0051338277 0.0055166893 0.024903415 0.017472416 0.013139118 0.0060213706 0.014061467 0.041401275 0.0062302044 0.023563398 0.044881836 0.042323623 0.01811632 0.011572866 0.044081304 0.032891303 0.018011903 0.0073787896 0.042375833 0.011868713 0.02450315 0.006334621 0.03250844 0.037694477 0.01153806 0.0 0.01867321 0.0 0.005899551 0.0042636874 0.011572866 0.0179945 0.0031673105 0.0 0.005603703 0.0097629735 0.0018272946 0.0020709338 0.025355887 0.01959556 0.0069959275 0.2 0 255 0 Iteration 4 First 81 genes (3%) aaa:0.011 aac:0.027 aag:0.039 aat:0.006 aca:0.004 acc:0.035 acg:0.011 act:0.010 aga:0.001 agc:0.011 agg:0.002 agt:0.003 ata:0.002 atc:0.042 atg:0.020 att:0.011 caa:0.007 cac:0.015 cag:0.026 cat:0.005 cca:0.005 ccc:0.011 ccg:0.024 cct:0.005 cga:0.005 cgc:0.027 cgg:0.016 cgt:0.012 cta:0.006 ctc:0.014 ctg:0.041 ctt:0.006 gaa:0.024 gac:0.045 gag:0.047 gat:0.018 gca:0.010 gcc:0.044 gcg:0.032 gct:0.017 gga:0.006 ggc:0.045 ggg:0.010 ggt:0.026 gta:0.005 gtc:0.035 gtg:0.037 gtt:0.012 taa:0.000 tac:0.019 tag:0.000 tat:0.005 tca:0.004 tcc:0.011 tcg:0.018 tct:0.003 tga:0.000 tgc:0.006 tgg:0.009 tgt:0.002 tta:0.002 ttc:0.025 ttg:0.017 ttt:0.006 CodonUsageIt4 sphere 0.010550574 0.02729466 0.039249577 0.005905441 0.0039609666 0.034856506 0.011234742 0.00950632 6.1214936E-4 0.010730619 0.0023045624 0.0034208347 0.0022325448 0.041770194 0.020452991 0.010514566 0.0072737746 0.0145115405 0.02614238 0.0050052213 0.0051492564 0.010910662 0.023945842 0.0049692127 0.004717151 0.026574485 0.016131936 0.012315005 0.005761406 0.014403515 0.04094199 0.006193511 0.023945842 0.04511901 0.046667386 0.018040402 0.010010443 0.04443484 0.031903785 0.017068164 0.0059414497 0.04486695 0.0103345215 0.026322423 0.0050052213 0.034892514 0.037017033 0.012026935 0.0 0.019444745 3.6008787E-5 0.0049332036 0.004068993 0.010874653 0.017932376 0.003204782 0.0 0.0058694324 0.009470311 0.001512369 0.0019084656 0.024557993 0.017320227 0.005725397 0.2 0 255 0 Iteration 5 First 27 genes (1%) aaa:0.010 aac:0.026 aag:0.048 aat:0.005 aca:0.004 acc:0.035 acg:0.012 act:0.011 aga:0.000 agc:0.010 agg:0.002 agt:0.003 ata:0.002 atc:0.042 atg:0.021 att:0.011 caa:0.006 cac:0.013 cag:0.027 cat:0.004 cca:0.004 ccc:0.010 ccg:0.026 cct:0.004 cga:0.003 cgc:0.022 cgg:0.014 cgt:0.011 cta:0.006 ctc:0.015 ctg:0.040 ctt:0.005 gaa:0.025 gac:0.047 gag:0.053 gat:0.015 gca:0.009 gcc:0.046 gcg:0.032 gct:0.014 gga:0.005 ggc:0.046 ggg:0.010 ggt:0.028 gta:0.005 gtc:0.038 gtg:0.038 gtt:0.015 taa:0.000 tac:0.018 tag:0.000 tat:0.004 tca:0.004 tcc:0.012 tcg:0.019 tct:0.003 tga:0.000 tgc:0.005 tgg:0.008 tgt:0.001 tta:0.002 ttc:0.025 ttg:0.017 ttt:0.005 CodonUsageIt5 sphere 0.009627921 0.025674457 0.04844048 0.0047136694 0.003911343 0.035402667 0.012235483 0.010831411 3.0087252E-4 0.009728212 0.0015043627 0.003209307 0.0016046535 0.042322736 0.020860495 0.011433156 0.0060174507 0.012937519 0.027078528 0.0041119247 0.003911343 0.009728212 0.025875038 0.0044127973 0.003209307 0.022465149 0.013940427 0.011132284 0.0055159964 0.015043627 0.04031692 0.004914251 0.024571257 0.04733728 0.052652694 0.015143917 0.009427339 0.045632333 0.03219336 0.014141009 0.0052151238 0.04623408 0.009828502 0.028081436 0.004513088 0.0383111 0.037809648 0.015043627 0.0 0.01775148 0.0 0.003911343 0.0036104703 0.012436065 0.018854678 0.003209307 0.0 0.004513088 0.00832414 7.020359E-4 0.0017049443 0.02497242 0.01654799 0.004914251 0.2 0 255 0 Iteration 6 First 27 genes (1%) aaa:0.010 aac:0.026 aag:0.048 aat:0.005 aca:0.004 acc:0.035 acg:0.012 act:0.011 aga:0.000 agc:0.010 agg:0.002 agt:0.003 ata:0.002 atc:0.042 atg:0.021 att:0.011 caa:0.006 cac:0.013 cag:0.027 cat:0.004 cca:0.004 ccc:0.010 ccg:0.026 cct:0.004 cga:0.003 cgc:0.022 cgg:0.014 cgt:0.011 cta:0.006 ctc:0.015 ctg:0.040 ctt:0.005 gaa:0.025 gac:0.047 gag:0.053 gat:0.015 gca:0.009 gcc:0.046 gcg:0.032 gct:0.014 gga:0.005 ggc:0.046 ggg:0.010 ggt:0.028 gta:0.005 gtc:0.038 gtg:0.038 gtt:0.015 taa:0.000 tac:0.018 tag:0.000 tat:0.004 tca:0.004 tcc:0.012 tcg:0.019 tct:0.003 tga:0.000 tgc:0.005 tgg:0.008 tgt:0.001 tta:0.002 ttc:0.025 ttg:0.017 ttt:0.005 CodonUsageIt6 sphere 0.009627921 0.025674457 0.04844048 0.0047136694 0.003911343 0.035402667 0.012235483 0.010831411 3.0087252E-4 0.009728212 0.0015043627 0.003209307 0.0016046535 0.042322736 0.020860495 0.011433156 0.0060174507 0.012937519 0.027078528 0.0041119247 0.003911343 0.009728212 0.025875038 0.0044127973 0.003209307 0.022465149 0.013940427 0.011132284 0.0055159964 0.015043627 0.04031692 0.004914251 0.024571257 0.04733728 0.052652694 0.015143917 0.009427339 0.045632333 0.03219336 0.014141009 0.0052151238 0.04623408 0.009828502 0.028081436 0.004513088 0.0383111 0.037809648 0.015043627 0.0 0.01775148 0.0 0.003911343 0.0036104703 0.012436065 0.018854678 0.003209307 0.0 0.004513088 0.00832414 7.020359E-4 0.0017049443 0.02497242 0.01654799 0.004914251 0.2 0 255 0 Iteration 7 First 27 genes (1%) aaa:0.010 aac:0.026 aag:0.048 aat:0.005 aca:0.004 acc:0.035 acg:0.012 act:0.011 aga:0.000 agc:0.010 agg:0.002 agt:0.003 ata:0.002 atc:0.042 atg:0.021 att:0.011 caa:0.006 cac:0.013 cag:0.027 cat:0.004 cca:0.004 ccc:0.010 ccg:0.026 cct:0.004 cga:0.003 cgc:0.022 cgg:0.014 cgt:0.011 cta:0.006 ctc:0.015 ctg:0.040 ctt:0.005 gaa:0.025 gac:0.047 gag:0.053 gat:0.015 gca:0.009 gcc:0.046 gcg:0.032 gct:0.014 gga:0.005 ggc:0.046 ggg:0.010 ggt:0.028 gta:0.005 gtc:0.038 gtg:0.038 gtt:0.015 taa:0.000 tac:0.018 tag:0.000 tat:0.004 tca:0.004 tcc:0.012 tcg:0.019 tct:0.003 tga:0.000 tgc:0.005 tgg:0.008 tgt:0.001 tta:0.002 ttc:0.025 ttg:0.017 ttt:0.005 CodonUsageIt7 sphere 0.009627921 0.025674457 0.04844048 0.0047136694 0.003911343 0.035402667 0.012235483 0.010831411 3.0087252E-4 0.009728212 0.0015043627 0.003209307 0.0016046535 0.042322736 0.020860495 0.011433156 0.0060174507 0.012937519 0.027078528 0.0041119247 0.003911343 0.009728212 0.025875038 0.0044127973 0.003209307 0.022465149 0.013940427 0.011132284 0.0055159964 0.015043627 0.04031692 0.004914251 0.024571257 0.04733728 0.052652694 0.015143917 0.009427339 0.045632333 0.03219336 0.014141009 0.0052151238 0.04623408 0.009828502 0.028081436 0.004513088 0.0383111 0.037809648 0.015043627 0.0 0.01775148 0.0 0.003911343 0.0036104703 0.012436065 0.018854678 0.003209307 0.0 0.004513088 0.00832414 7.020359E-4 0.0017049443 0.02497242 0.01654799 0.004914251 0.2 0 255 0 Iteration 8 First 27 genes (1%) aaa:0.010 aac:0.026 aag:0.048 aat:0.005 aca:0.004 acc:0.035 acg:0.012 act:0.011 aga:0.000 agc:0.010 agg:0.002 agt:0.003 ata:0.002 atc:0.042 atg:0.021 att:0.011 caa:0.006 cac:0.013 cag:0.027 cat:0.004 cca:0.004 ccc:0.010 ccg:0.026 cct:0.004 cga:0.003 cgc:0.022 cgg:0.014 cgt:0.011 cta:0.006 ctc:0.015 ctg:0.040 ctt:0.005 gaa:0.025 gac:0.047 gag:0.053 gat:0.015 gca:0.009 gcc:0.046 gcg:0.032 gct:0.014 gga:0.005 ggc:0.046 ggg:0.010 ggt:0.028 gta:0.005 gtc:0.038 gtg:0.038 gtt:0.015 taa:0.000 tac:0.018 tag:0.000 tat:0.004 tca:0.004 tcc:0.012 tcg:0.019 tct:0.003 tga:0.000 tgc:0.005 tgg:0.008 tgt:0.001 tta:0.002 ttc:0.025 ttg:0.017 ttt:0.005 CodonUsageIt8 sphere 0.009627921 0.025674457 0.04844048 0.0047136694 0.003911343 0.035402667 0.012235483 0.010831411 3.0087252E-4 0.009728212 0.0015043627 0.003209307 0.0016046535 0.042322736 0.020860495 0.011433156 0.0060174507 0.012937519 0.027078528 0.0041119247 0.003911343 0.009728212 0.025875038 0.0044127973 0.003209307 0.022465149 0.013940427 0.011132284 0.0055159964 0.015043627 0.04031692 0.004914251 0.024571257 0.04733728 0.052652694 0.015143917 0.009427339 0.045632333 0.03219336 0.014141009 0.0052151238 0.04623408 0.009828502 0.028081436 0.004513088 0.0383111 0.037809648 0.015043627 0.0 0.01775148 0.0 0.003911343 0.0036104703 0.012436065 0.018854678 0.003209307 0.0 0.004513088 0.00832414 7.020359E-4 0.0017049443 0.02497242 0.01654799 0.004914251 0.2 0 255 0 Iteration 9 First 27 genes (1%) aaa:0.010 aac:0.026 aag:0.048 aat:0.005 aca:0.004 acc:0.035 acg:0.012 act:0.011 aga:0.000 agc:0.010 agg:0.002 agt:0.003 ata:0.002 atc:0.042 atg:0.021 att:0.011 caa:0.006 cac:0.013 cag:0.027 cat:0.004 cca:0.004 ccc:0.010 ccg:0.026 cct:0.004 cga:0.003 cgc:0.022 cgg:0.014 cgt:0.011 cta:0.006 ctc:0.015 ctg:0.040 ctt:0.005 gaa:0.025 gac:0.047 gag:0.053 gat:0.015 gca:0.009 gcc:0.046 gcg:0.032 gct:0.014 gga:0.005 ggc:0.046 ggg:0.010 ggt:0.028 gta:0.005 gtc:0.038 gtg:0.038 gtt:0.015 taa:0.000 tac:0.018 tag:0.000 tat:0.004 tca:0.004 tcc:0.012 tcg:0.019 tct:0.003 tga:0.000 tgc:0.005 tgg:0.008 tgt:0.001 tta:0.002 ttc:0.025 ttg:0.017 ttt:0.005 CodonUsageIt9 sphere 0.009627921 0.025674457 0.04844048 0.0047136694 0.003911343 0.035402667 0.012235483 0.010831411 3.0087252E-4 0.009728212 0.0015043627 0.003209307 0.0016046535 0.042322736 0.020860495 0.011433156 0.0060174507 0.012937519 0.027078528 0.0041119247 0.003911343 0.009728212 0.025875038 0.0044127973 0.003209307 0.022465149 0.013940427 0.011132284 0.0055159964 0.015043627 0.04031692 0.004914251 0.024571257 0.04733728 0.052652694 0.015143917 0.009427339 0.045632333 0.03219336 0.014141009 0.0052151238 0.04623408 0.009828502 0.028081436 0.004513088 0.0383111 0.037809648 0.015043627 0.0 0.01775148 0.0 0.003911343 0.0036104703 0.012436065 0.018854678 0.003209307 0.0 0.004513088 0.00832414 7.020359E-4 0.0017049443 0.02497242 0.01654799 0.004914251 0.2 0 255 0 Iteration 10 First 27 genes (1%) aaa:0.010 aac:0.026 aag:0.048 aat:0.005 aca:0.004 acc:0.035 acg:0.012 act:0.011 aga:0.000 agc:0.010 agg:0.002 agt:0.003 ata:0.002 atc:0.042 atg:0.021 att:0.011 caa:0.006 cac:0.013 cag:0.027 cat:0.004 cca:0.004 ccc:0.010 ccg:0.026 cct:0.004 cga:0.003 cgc:0.022 cgg:0.014 cgt:0.011 cta:0.006 ctc:0.015 ctg:0.040 ctt:0.005 gaa:0.025 gac:0.047 gag:0.053 gat:0.015 gca:0.009 gcc:0.046 gcg:0.032 gct:0.014 gga:0.005 ggc:0.046 ggg:0.010 ggt:0.028 gta:0.005 gtc:0.038 gtg:0.038 gtt:0.015 taa:0.000 tac:0.018 tag:0.000 tat:0.004 tca:0.004 tcc:0.012 tcg:0.019 tct:0.003 tga:0.000 tgc:0.005 tgg:0.008 tgt:0.001 tta:0.002 ttc:0.025 ttg:0.017 ttt:0.005 CodonUsageIt10 sphere 0.009627921 0.025674457 0.04844048 0.0047136694 0.003911343 0.035402667 0.012235483 0.010831411 3.0087252E-4 0.009728212 0.0015043627 0.003209307 0.0016046535 0.042322736 0.020860495 0.011433156 0.0060174507 0.012937519 0.027078528 0.0041119247 0.003911343 0.009728212 0.025875038 0.0044127973 0.003209307 0.022465149 0.013940427 0.011132284 0.0055159964 0.015043627 0.04031692 0.004914251 0.024571257 0.04733728 0.052652694 0.015143917 0.009427339 0.045632333 0.03219336 0.014141009 0.0052151238 0.04623408 0.009828502 0.028081436 0.004513088 0.0383111 0.037809648 0.015043627 0.0 0.01775148 0.0 0.003911343 0.0036104703 0.012436065 0.018854678 0.003209307 0.0 0.004513088 0.00832414 7.020359E-4 0.0017049443 0.02497242 0.01654799 0.004914251 0.2 0 255 0 Iteration 11 First 27 genes (1%) aaa:0.010 aac:0.026 aag:0.048 aat:0.005 aca:0.004 acc:0.035 acg:0.012 act:0.011 aga:0.000 agc:0.010 agg:0.002 agt:0.003 ata:0.002 atc:0.042 atg:0.021 att:0.011 caa:0.006 cac:0.013 cag:0.027 cat:0.004 cca:0.004 ccc:0.010 ccg:0.026 cct:0.004 cga:0.003 cgc:0.022 cgg:0.014 cgt:0.011 cta:0.006 ctc:0.015 ctg:0.040 ctt:0.005 gaa:0.025 gac:0.047 gag:0.053 gat:0.015 gca:0.009 gcc:0.046 gcg:0.032 gct:0.014 gga:0.005 ggc:0.046 ggg:0.010 ggt:0.028 gta:0.005 gtc:0.038 gtg:0.038 gtt:0.015 taa:0.000 tac:0.018 tag:0.000 tat:0.004 tca:0.004 tcc:0.012 tcg:0.019 tct:0.003 tga:0.000 tgc:0.005 tgg:0.008 tgt:0.001 tta:0.002 ttc:0.025 ttg:0.017 ttt:0.005 CodonUsageIt11 sphere 0.009627921 0.025674457 0.04844048 0.0047136694 0.003911343 0.035402667 0.012235483 0.010831411 3.0087252E-4 0.009728212 0.0015043627 0.003209307 0.0016046535 0.042322736 0.020860495 0.011433156 0.0060174507 0.012937519 0.027078528 0.0041119247 0.003911343 0.009728212 0.025875038 0.0044127973 0.003209307 0.022465149 0.013940427 0.011132284 0.0055159964 0.015043627 0.04031692 0.004914251 0.024571257 0.04733728 0.052652694 0.015143917 0.009427339 0.045632333 0.03219336 0.014141009 0.0052151238 0.04623408 0.009828502 0.028081436 0.004513088 0.0383111 0.037809648 0.015043627 0.0 0.01775148 0.0 0.003911343 0.0036104703 0.012436065 0.018854678 0.003209307 0.0 0.004513088 0.00832414 7.020359E-4 0.0017049443 0.02497242 0.01654799 0.004914251 0.2 0 255 0 Iteration 12 First 27 genes (1%) aaa:0.010 aac:0.026 aag:0.048 aat:0.005 aca:0.004 acc:0.035 acg:0.012 act:0.011 aga:0.000 agc:0.010 agg:0.002 agt:0.003 ata:0.002 atc:0.042 atg:0.021 att:0.011 caa:0.006 cac:0.013 cag:0.027 cat:0.004 cca:0.004 ccc:0.010 ccg:0.026 cct:0.004 cga:0.003 cgc:0.022 cgg:0.014 cgt:0.011 cta:0.006 ctc:0.015 ctg:0.040 ctt:0.005 gaa:0.025 gac:0.047 gag:0.053 gat:0.015 gca:0.009 gcc:0.046 gcg:0.032 gct:0.014 gga:0.005 ggc:0.046 ggg:0.010 ggt:0.028 gta:0.005 gtc:0.038 gtg:0.038 gtt:0.015 taa:0.000 tac:0.018 tag:0.000 tat:0.004 tca:0.004 tcc:0.012 tcg:0.019 tct:0.003 tga:0.000 tgc:0.005 tgg:0.008 tgt:0.001 tta:0.002 ttc:0.025 ttg:0.017 ttt:0.005 CodonUsageIt12 sphere 0.009627921 0.025674457 0.04844048 0.0047136694 0.003911343 0.035402667 0.012235483 0.010831411 3.0087252E-4 0.009728212 0.0015043627 0.003209307 0.0016046535 0.042322736 0.020860495 0.011433156 0.0060174507 0.012937519 0.027078528 0.0041119247 0.003911343 0.009728212 0.025875038 0.0044127973 0.003209307 0.022465149 0.013940427 0.011132284 0.0055159964 0.015043627 0.04031692 0.004914251 0.024571257 0.04733728 0.052652694 0.015143917 0.009427339 0.045632333 0.03219336 0.014141009 0.0052151238 0.04623408 0.009828502 0.028081436 0.004513088 0.0383111 0.037809648 0.015043627 0.0 0.01775148 0.0 0.003911343 0.0036104703 0.012436065 0.018854678 0.003209307 0.0 0.004513088 0.00832414 7.020359E-4 0.0017049443 0.02497242 0.01654799 0.004914251 0.2 0 255 0 Iteration 13 First 27 genes (1%) aaa:0.010 aac:0.026 aag:0.048 aat:0.005 aca:0.004 acc:0.035 acg:0.012 act:0.011 aga:0.000 agc:0.010 agg:0.002 agt:0.003 ata:0.002 atc:0.042 atg:0.021 att:0.011 caa:0.006 cac:0.013 cag:0.027 cat:0.004 cca:0.004 ccc:0.010 ccg:0.026 cct:0.004 cga:0.003 cgc:0.022 cgg:0.014 cgt:0.011 cta:0.006 ctc:0.015 ctg:0.040 ctt:0.005 gaa:0.025 gac:0.047 gag:0.053 gat:0.015 gca:0.009 gcc:0.046 gcg:0.032 gct:0.014 gga:0.005 ggc:0.046 ggg:0.010 ggt:0.028 gta:0.005 gtc:0.038 gtg:0.038 gtt:0.015 taa:0.000 tac:0.018 tag:0.000 tat:0.004 tca:0.004 tcc:0.012 tcg:0.019 tct:0.003 tga:0.000 tgc:0.005 tgg:0.008 tgt:0.001 tta:0.002 ttc:0.025 ttg:0.017 ttt:0.005 CodonUsageIt13 sphere 0.009627921 0.025674457 0.04844048 0.0047136694 0.003911343 0.035402667 0.012235483 0.010831411 3.0087252E-4 0.009728212 0.0015043627 0.003209307 0.0016046535 0.042322736 0.020860495 0.011433156 0.0060174507 0.012937519 0.027078528 0.0041119247 0.003911343 0.009728212 0.025875038 0.0044127973 0.003209307 0.022465149 0.013940427 0.011132284 0.0055159964 0.015043627 0.04031692 0.004914251 0.024571257 0.04733728 0.052652694 0.015143917 0.009427339 0.045632333 0.03219336 0.014141009 0.0052151238 0.04623408 0.009828502 0.028081436 0.004513088 0.0383111 0.037809648 0.015043627 0.0 0.01775148 0.0 0.003911343 0.0036104703 0.012436065 0.018854678 0.003209307 0.0 0.004513088 0.00832414 7.020359E-4 0.0017049443 0.02497242 0.01654799 0.004914251 0.2 0 255 0 Iteration 14 First 27 genes (1%) aaa:0.010 aac:0.026 aag:0.048 aat:0.005 aca:0.004 acc:0.035 acg:0.012 act:0.011 aga:0.000 agc:0.010 agg:0.002 agt:0.003 ata:0.002 atc:0.042 atg:0.021 att:0.011 caa:0.006 cac:0.013 cag:0.027 cat:0.004 cca:0.004 ccc:0.010 ccg:0.026 cct:0.004 cga:0.003 cgc:0.022 cgg:0.014 cgt:0.011 cta:0.006 ctc:0.015 ctg:0.040 ctt:0.005 gaa:0.025 gac:0.047 gag:0.053 gat:0.015 gca:0.009 gcc:0.046 gcg:0.032 gct:0.014 gga:0.005 ggc:0.046 ggg:0.010 ggt:0.028 gta:0.005 gtc:0.038 gtg:0.038 gtt:0.015 taa:0.000 tac:0.018 tag:0.000 tat:0.004 tca:0.004 tcc:0.012 tcg:0.019 tct:0.003 tga:0.000 tgc:0.005 tgg:0.008 tgt:0.001 tta:0.002 ttc:0.025 ttg:0.017 ttt:0.005 CodonUsageIt14 sphere 0.009627921 0.025674457 0.04844048 0.0047136694 0.003911343 0.035402667 0.012235483 0.010831411 3.0087252E-4 0.009728212 0.0015043627 0.003209307 0.0016046535 0.042322736 0.020860495 0.011433156 0.0060174507 0.012937519 0.027078528 0.0041119247 0.003911343 0.009728212 0.025875038 0.0044127973 0.003209307 0.022465149 0.013940427 0.011132284 0.0055159964 0.015043627 0.04031692 0.004914251 0.024571257 0.04733728 0.052652694 0.015143917 0.009427339 0.045632333 0.03219336 0.014141009 0.0052151238 0.04623408 0.009828502 0.028081436 0.004513088 0.0383111 0.037809648 0.015043627 0.0 0.01775148 0.0 0.003911343 0.0036104703 0.012436065 0.018854678 0.003209307 0.0 0.004513088 0.00832414 7.020359E-4 0.0017049443 0.02497242 0.01654799 0.004914251 0.2 0 255 0 aaa:0.199 aac:1.000 aag:1.000 aat:0.184 aca:0.110 acc:1.000 acg:0.346 act:0.306 aga:0.013 agc:0.516 agg:0.067 agt:0.170 ata:0.038 atc:1.000 atg:1.000 att:0.270 caa:0.222 cac:1.000 cag:1.000 cat:0.318 cca:0.151 ccc:0.376 ccg:1.000 cct:0.171 cga:0.143 cgc:1.000 cgg:0.621 cgt:0.496 cta:0.137 ctc:0.373 ctg:1.000 ctt:0.122 gaa:0.467 gac:1.000 gag:1.000 gat:0.320 gca:0.207 gcc:1.000 gcg:0.705 gct:0.310 gga:0.113 ggc:1.000 ggg:0.213 ggt:0.607 gta:0.118 gtc:1.000 gtg:0.987 gtt:0.393 taa:0.000 tac:1.000 tag:0.000 tat:0.220 tca:0.191 tcc:0.660 tcg:1.000 tct:0.170 tga:0.000 tgc:1.000 tgg:1.000 tgt:0.156 tta:0.042 ttc:1.000 ttg:0.410 ttt:0.197 ttt:0.197 ttc:1.000 ttg:0.410 tta:0.042 tct:0.170 tcc:0.660 tcg:1.000 tca:0.191 tgt:0.156 tgc:1.000 tgg:1.000 tga:0.000 tat:0.220 tac:1.000 tag:0.000 taa:0.000 ctt:0.122 ctc:0.373 ctg:1.000 cta:0.137 cct:0.171 ccc:0.376 ccg:1.000 cca:0.151 cgt:0.496 cgc:1.000 cgg:0.621 cga:0.143 cat:0.318 cac:1.000 cag:1.000 caa:0.222 gtt:0.393 gtc:1.000 gtg:0.987 gta:0.118 gct:0.310 gcc:1.000 gcg:0.705 gca:0.207 ggt:0.607 ggc:1.000 ggg:0.213 gga:0.113 gat:0.320 gac:1.000 gag:1.000 gaa:0.467 att:0.270 atc:1.000 atg:1.000 ata:0.038 act:0.306 acc:1.000 acg:0.346 aca:0.110 agt:0.170 agc:0.516 agg:0.067 aga:0.013 aat:0.184 aac:1.000 aag:1.000 aaa:0.199 // 0 - CAICLASS // 1 - STRAND // 2 - GC_CONT // 3 - GC_CONT3 // 4 - GC_SKEW // 5 - AT_SKEW // 6 - GENELENGTH // 7 - CAIEXT --- 0.237512 0.61979735 0.908296 0.13149281 -0.0028320826 0.14778697 NaN