AdditionalInfoFile = "" ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 Looking for randomclass.txt... Loading sequence... Loaded... Getting seq... Got NC_000908 484 CDS features found CodonUsage sphere 0.0705645 0.029191049 0.024626922 0.0461826 0.016661063 0.010324845 0.0016068468 0.025521513 0.013920307 0.006700893 0.0046552974 0.025891885 0.012831982 0.017983008 0.012718021 0.0519946 0.038347796 0.0055555874 0.009059881 0.010296355 0.0107464995 0.0036296502 9.686665E-4 0.014689542 0.001356133 0.0030997328 0.001054137 0.0069630025 0.012735115 0.0050313678 0.004490054 0.020091282 0.045276612 0.0068490417 0.011133967 0.04219967 0.021470208 0.0041652657 0.0026495878 0.027458847 0.011475849 0.005042764 0.006740779 0.02303717 0.013025715 0.0033903327 0.0070826616 0.037948932 1.5384702E-4 0.008427398 6.837646E-5 0.024057116 0.0162679 0.004057003 0.0011623998 0.012507194 0.006290634 0.0017094115 0.0035327836 0.0066439123 0.05068405 0.008302041 0.014518601 0.05317979 0.4 255 0 0 aaa:0.071 aac:0.029 aag:0.025 aat:0.046 aca:0.017 acc:0.010 acg:0.002 act:0.026 aga:0.014 agc:0.007 agg:0.005 agt:0.026 ata:0.013 atc:0.018 atg:0.013 att:0.052 caa:0.038 cac:0.006 cag:0.009 cat:0.010 cca:0.011 ccc:0.004 ccg:0.001 cct:0.015 cga:0.001 cgc:0.003 cgg:0.001 cgt:0.007 cta:0.013 ctc:0.005 ctg:0.004 ctt:0.020 gaa:0.045 gac:0.007 gag:0.011 gat:0.042 gca:0.021 gcc:0.004 gcg:0.003 gct:0.027 gga:0.011 ggc:0.005 ggg:0.007 ggt:0.023 gta:0.013 gtc:0.003 gtg:0.007 gtt:0.038 taa:0.000 tac:0.008 tag:0.000 tat:0.024 tca:0.016 tcc:0.004 tcg:0.001 tct:0.013 tga:0.006 tgc:0.002 tgg:0.004 tgt:0.007 tta:0.051 ttc:0.008 ttg:0.015 ttt:0.053 Number of points = 484 Iteration 0 First 242 genes (50%) aaa:0.076 aac:0.025 aag:0.021 aat:0.053 aca:0.018 acc:0.008 acg:0.001 act:0.026 aga:0.014 agc:0.006 agg:0.004 agt:0.026 ata:0.015 atc:0.013 atg:0.012 att:0.053 caa:0.040 cac:0.005 cag:0.007 cat:0.011 cca:0.011 ccc:0.002 ccg:0.001 cct:0.016 cga:0.001 cgc:0.002 cgg:0.001 cgt:0.007 cta:0.012 ctc:0.003 ctg:0.003 ctt:0.021 gaa:0.051 gac:0.007 gag:0.009 gat:0.045 gca:0.022 gcc:0.003 gcg:0.002 gct:0.028 gga:0.013 ggc:0.005 ggg:0.004 ggt:0.025 gta:0.013 gtc:0.002 gtg:0.005 gtt:0.039 taa:0.000 tac:0.007 tag:0.000 tat:0.025 tca:0.017 tcc:0.003 tcg:0.001 tct:0.014 tga:0.007 tgc:0.002 tgg:0.003 tgt:0.007 tta:0.053 ttc:0.008 ttg:0.013 ttt:0.053 CodonUsageIt0 sphere 0.0759499 0.02508235 0.020949164 0.053122967 0.01819021 0.0077943057 0.0011958962 0.026320206 0.014361245 0.006367623 0.0036821014 0.025669808 0.014571051 0.013112897 0.012053375 0.053332772 0.039810754 0.0045737782 0.0073537123 0.011161698 0.01124562 0.0022868891 7.238319E-4 0.015599102 0.0012483478 0.0024547342 5.1402557E-4 0.0069236094 0.011749156 0.0033359209 0.002769444 0.020739358 0.0505948 0.006797726 0.009168537 0.045391604 0.021777898 0.0032939597 0.0018358056 0.027925225 0.012756226 0.004689172 0.003996811 0.024904013 0.013060445 0.0023393407 0.004689172 0.038898095 0.0 0.0073012607 0.0 0.025365587 0.016721565 0.0032205274 9.965801E-4 0.01422487 0.006997042 0.0017623734 0.0030631728 0.0068501774 0.053007573 0.0075530284 0.013165348 0.053406205 0.2 0 255 0 Iteration 1 First 121 genes (25%) aaa:0.082 aac:0.021 aag:0.020 aat:0.059 aca:0.019 acc:0.006 acg:0.001 act:0.026 aga:0.015 agc:0.006 agg:0.003 agt:0.025 ata:0.016 atc:0.011 atg:0.011 att:0.053 caa:0.040 cac:0.004 cag:0.006 cat:0.011 cca:0.011 ccc:0.002 ccg:0.001 cct:0.015 cga:0.001 cgc:0.002 cgg:0.000 cgt:0.006 cta:0.011 ctc:0.003 ctg:0.002 ctt:0.021 gaa:0.058 gac:0.007 gag:0.009 gat:0.049 gca:0.021 gcc:0.002 gcg:0.002 gct:0.027 gga:0.013 ggc:0.004 ggg:0.003 ggt:0.023 gta:0.013 gtc:0.002 gtg:0.004 gtt:0.040 taa:0.000 tac:0.006 tag:0.000 tat:0.025 tca:0.017 tcc:0.003 tcg:0.001 tct:0.016 tga:0.008 tgc:0.002 tgg:0.002 tgt:0.007 tta:0.054 ttc:0.007 ttg:0.012 ttt:0.055 CodonUsageIt1 sphere 0.082157634 0.021162529 0.019540068 0.058502633 0.018552484 0.0057609105 0.0010346125 0.025865313 0.014672686 0.0059255078 0.0030332957 0.025042325 0.016224604 0.011028029 0.01109857 0.053000376 0.04018529 0.0037622273 0.0064193 0.011404252 0.011192626 0.0015048909 6.5838976E-4 0.015448646 0.0011051543 0.002327878 3.527088E-4 0.006231189 0.011075056 0.0027511287 0.002327878 0.021350639 0.057632618 0.0065133558 0.0089823175 0.048673816 0.020974416 0.0022573364 0.0015519187 0.027205605 0.013050226 0.0043265615 0.0028686982 0.023043642 0.012885628 0.0017400301 0.003574116 0.040091235 0.0 0.006160647 0.0 0.025465576 0.016930023 0.002657073 8.93529E-4 0.015871895 0.007689052 0.0018811136 0.0024924756 0.006724981 0.053658765 0.006866065 0.011733446 0.054905005 0.2 0 255 0 Iteration 2 First 58 genes (12%) aaa:0.082 aac:0.019 aag:0.019 aat:0.059 aca:0.019 acc:0.005 acg:0.001 act:0.026 aga:0.016 agc:0.005 agg:0.003 agt:0.027 ata:0.017 atc:0.010 atg:0.011 att:0.054 caa:0.041 cac:0.004 cag:0.005 cat:0.011 cca:0.011 ccc:0.001 ccg:0.001 cct:0.016 cga:0.001 cgc:0.002 cgg:0.000 cgt:0.005 cta:0.011 ctc:0.002 ctg:0.002 ctt:0.022 gaa:0.062 gac:0.006 gag:0.008 gat:0.048 gca:0.021 gcc:0.002 gcg:0.001 gct:0.029 gga:0.013 ggc:0.004 ggg:0.002 ggt:0.023 gta:0.013 gtc:0.002 gtg:0.003 gtt:0.042 taa:0.000 tac:0.006 tag:0.000 tat:0.026 tca:0.017 tcc:0.002 tcg:0.001 tct:0.016 tga:0.008 tgc:0.002 tgg:0.002 tgt:0.007 tta:0.055 ttc:0.007 ttg:0.011 ttt:0.054 CodonUsageIt2 sphere 0.08219744 0.019103676 0.01925857 0.059118133 0.019413466 0.00464684 5.679471E-4 0.02581578 0.016212309 0.005059893 0.0026332093 0.026951673 0.017296571 0.010171417 0.010997522 0.053800084 0.040582404 0.003510946 0.0052664187 0.010687732 0.011358943 0.0011875258 6.7121023E-4 0.015954152 0.0012391574 0.0019103676 3.0978935E-4 0.0053180503 0.01094589 0.0020136307 0.0018071044 0.022149937 0.062112764 0.0059892605 0.007589839 0.04848203 0.02122057 0.002116894 0.0013940521 0.028758777 0.012752995 0.0041305246 0.0020136307 0.023027675 0.012959521 0.0020652623 0.002684841 0.041563403 0.0 0.0059892605 0.0 0.025970673 0.016831888 0.0019103676 8.777365E-4 0.015850889 0.008261049 0.001961999 0.001961999 0.0069702603 0.05472945 0.006608839 0.011204048 0.053851712 0.2 0 255 0 Iteration 3 First 29 genes (6%) aaa:0.082 aac:0.020 aag:0.019 aat:0.062 aca:0.021 acc:0.004 acg:0.001 act:0.028 aga:0.016 agc:0.006 agg:0.002 agt:0.029 ata:0.015 atc:0.009 atg:0.010 att:0.051 caa:0.042 cac:0.003 cag:0.006 cat:0.011 cca:0.013 ccc:0.001 ccg:0.001 cct:0.017 cga:0.001 cgc:0.002 cgg:0.000 cgt:0.004 cta:0.010 ctc:0.002 ctg:0.001 ctt:0.019 gaa:0.069 gac:0.006 gag:0.008 gat:0.050 gca:0.020 gcc:0.002 gcg:0.001 gct:0.026 gga:0.011 ggc:0.003 ggg:0.002 ggt:0.023 gta:0.013 gtc:0.001 gtg:0.002 gtt:0.043 taa:0.000 tac:0.006 tag:0.000 tat:0.025 tca:0.018 tcc:0.002 tcg:0.001 tct:0.017 tga:0.010 tgc:0.001 tgg:0.003 tgt:0.006 tta:0.054 ttc:0.007 ttg:0.009 ttt:0.052 CodonUsageIt3 sphere 0.08242539 0.019611558 0.01913785 0.061771672 0.02065372 0.004073899 6.631928E-4 0.028138323 0.015821885 0.005968735 0.0020843202 0.028706774 0.014874467 0.0094741825 0.00985315 0.051065847 0.04197063 0.0031264804 0.005968735 0.010516343 0.012695405 0.0011369019 7.5793464E-4 0.016769303 0.0012316437 0.0017053529 9.474183E-5 0.0041686404 0.010232117 0.0024632874 0.0013263857 0.019232592 0.069256276 0.005968735 0.00776883 0.050402652 0.02027475 0.0019895784 9.474183E-4 0.02595926 0.011274277 0.0029369968 0.0020843202 0.023211747 0.012505922 9.474183E-4 0.0018000947 0.043297015 0.0 0.005968735 0.0 0.02539081 0.018095689 0.0016106111 0.0010421601 0.01705353 0.00985315 0.0011369019 0.0027475131 0.006252961 0.05438181 0.006631928 0.0094741825 0.052013263 0.2 0 255 0 Iteration 4 First 14 genes (3%) aaa:0.076 aac:0.014 aag:0.019 aat:0.050 aca:0.019 acc:0.004 acg:0.000 act:0.032 aga:0.014 agc:0.006 agg:0.002 agt:0.023 ata:0.013 atc:0.009 atg:0.008 att:0.046 caa:0.049 cac:0.003 cag:0.006 cat:0.011 cca:0.017 ccc:0.001 ccg:0.001 cct:0.024 cga:0.001 cgc:0.001 cgg:0.000 cgt:0.003 cta:0.008 ctc:0.003 ctg:0.000 ctt:0.020 gaa:0.094 gac:0.006 gag:0.009 gat:0.056 gca:0.018 gcc:0.001 gcg:0.001 gct:0.025 gga:0.010 ggc:0.003 ggg:0.001 ggt:0.022 gta:0.013 gtc:0.000 gtg:0.001 gtt:0.053 taa:0.000 tac:0.007 tag:0.000 tat:0.026 tca:0.016 tcc:0.001 tcg:0.001 tct:0.017 tga:0.010 tgc:0.001 tgg:0.003 tgt:0.007 tta:0.049 ttc:0.008 ttg:0.008 ttt:0.049 CodonUsageIt4 sphere 0.07597341 0.014482431 0.018518519 0.050332382 0.01923077 0.0042735045 4.748338E-4 0.031813864 0.013770181 0.0059354226 0.0018993352 0.022554606 0.013057929 0.009021842 0.0075973407 0.046296295 0.048670467 0.0033238367 0.0064102565 0.011158595 0.016619183 9.496676E-4 7.122507E-4 0.023979107 7.122507E-4 0.0011870845 2.374169E-4 0.002611586 0.008072175 0.0030864198 4.748338E-4 0.019705603 0.09449193 0.0061728396 0.008547009 0.056267805 0.017806267 9.496676E-4 9.496676E-4 0.024691358 0.010208927 0.002611586 0.0014245014 0.022079771 0.013295347 4.748338E-4 9.496676E-4 0.05294397 0.0 0.0066476734 0.0 0.025878442 0.016381767 0.0011870845 9.496676E-4 0.016619183 0.010446344 7.122507E-4 0.0030864198 0.007359924 0.0491453 0.0075973407 0.0075973407 0.049382716 0.2 0 255 0 Iteration 5 First 4 genes (1%) aaa:0.062 aac:0.012 aag:0.018 aat:0.040 aca:0.022 acc:0.006 acg:0.000 act:0.040 aga:0.010 agc:0.005 agg:0.001 agt:0.019 ata:0.009 atc:0.007 atg:0.002 att:0.040 caa:0.058 cac:0.001 cag:0.005 cat:0.009 cca:0.024 ccc:0.001 ccg:0.001 cct:0.033 cga:0.001 cgc:0.001 cgg:0.000 cgt:0.002 cta:0.007 ctc:0.002 ctg:0.000 ctt:0.014 gaa:0.138 gac:0.007 gag:0.011 gat:0.066 gca:0.018 gcc:0.000 gcg:0.000 gct:0.028 gga:0.007 ggc:0.003 ggg:0.000 ggt:0.014 gta:0.015 gtc:0.001 gtg:0.000 gtt:0.065 taa:0.000 tac:0.004 tag:0.000 tat:0.017 tca:0.022 tcc:0.001 tcg:0.001 tct:0.019 tga:0.011 tgc:0.000 tgg:0.002 tgt:0.002 tta:0.035 ttc:0.009 ttg:0.005 ttt:0.043 CodonUsageIt5 sphere 0.06198547 0.012106538 0.017917676 0.03970944 0.021791767 0.005811138 4.842615E-4 0.03970944 0.00968523 0.0053268764 9.68523E-4 0.0188862 0.008716707 0.0072639226 0.0024213076 0.03970944 0.05762712 9.68523E-4 0.004842615 0.009200969 0.024213076 0.0014527845 9.68523E-4 0.03292978 9.68523E-4 9.68523E-4 4.842615E-4 0.0024213076 0.0072639226 0.0024213076 0.0 0.014043584 0.13753027 0.0072639226 0.0111380145 0.06585956 0.018401938 0.0 4.842615E-4 0.027602905 0.0072639226 0.002905569 4.842615E-4 0.014043584 0.015012107 9.68523E-4 0.0 0.065375306 0.0 0.003874092 0.0 0.017433414 0.021791767 0.0014527845 0.0014527845 0.01937046 0.0111380145 4.842615E-4 0.001937046 0.001937046 0.03486683 0.008716707 0.004842615 0.043099273 0.2 0 255 0 Iteration 6 First 4 genes (1%) aaa:0.062 aac:0.012 aag:0.018 aat:0.040 aca:0.022 acc:0.006 acg:0.000 act:0.040 aga:0.010 agc:0.005 agg:0.001 agt:0.019 ata:0.009 atc:0.007 atg:0.002 att:0.040 caa:0.058 cac:0.001 cag:0.005 cat:0.009 cca:0.024 ccc:0.001 ccg:0.001 cct:0.033 cga:0.001 cgc:0.001 cgg:0.000 cgt:0.002 cta:0.007 ctc:0.002 ctg:0.000 ctt:0.014 gaa:0.138 gac:0.007 gag:0.011 gat:0.066 gca:0.018 gcc:0.000 gcg:0.000 gct:0.028 gga:0.007 ggc:0.003 ggg:0.000 ggt:0.014 gta:0.015 gtc:0.001 gtg:0.000 gtt:0.065 taa:0.000 tac:0.004 tag:0.000 tat:0.017 tca:0.022 tcc:0.001 tcg:0.001 tct:0.019 tga:0.011 tgc:0.000 tgg:0.002 tgt:0.002 tta:0.035 ttc:0.009 ttg:0.005 ttt:0.043 CodonUsageIt6 sphere 0.06198547 0.012106538 0.017917676 0.03970944 0.021791767 0.005811138 4.842615E-4 0.03970944 0.00968523 0.0053268764 9.68523E-4 0.0188862 0.008716707 0.0072639226 0.0024213076 0.03970944 0.05762712 9.68523E-4 0.004842615 0.009200969 0.024213076 0.0014527845 9.68523E-4 0.03292978 9.68523E-4 9.68523E-4 4.842615E-4 0.0024213076 0.0072639226 0.0024213076 0.0 0.014043584 0.13753027 0.0072639226 0.0111380145 0.06585956 0.018401938 0.0 4.842615E-4 0.027602905 0.0072639226 0.002905569 4.842615E-4 0.014043584 0.015012107 9.68523E-4 0.0 0.065375306 0.0 0.003874092 0.0 0.017433414 0.021791767 0.0014527845 0.0014527845 0.01937046 0.0111380145 4.842615E-4 0.001937046 0.001937046 0.03486683 0.008716707 0.004842615 0.043099273 0.2 0 255 0 Iteration 7 First 4 genes (1%) aaa:0.062 aac:0.012 aag:0.018 aat:0.040 aca:0.022 acc:0.006 acg:0.000 act:0.040 aga:0.010 agc:0.005 agg:0.001 agt:0.019 ata:0.009 atc:0.007 atg:0.002 att:0.040 caa:0.058 cac:0.001 cag:0.005 cat:0.009 cca:0.024 ccc:0.001 ccg:0.001 cct:0.033 cga:0.001 cgc:0.001 cgg:0.000 cgt:0.002 cta:0.007 ctc:0.002 ctg:0.000 ctt:0.014 gaa:0.138 gac:0.007 gag:0.011 gat:0.066 gca:0.018 gcc:0.000 gcg:0.000 gct:0.028 gga:0.007 ggc:0.003 ggg:0.000 ggt:0.014 gta:0.015 gtc:0.001 gtg:0.000 gtt:0.065 taa:0.000 tac:0.004 tag:0.000 tat:0.017 tca:0.022 tcc:0.001 tcg:0.001 tct:0.019 tga:0.011 tgc:0.000 tgg:0.002 tgt:0.002 tta:0.035 ttc:0.009 ttg:0.005 ttt:0.043 CodonUsageIt7 sphere 0.06198547 0.012106538 0.017917676 0.03970944 0.021791767 0.005811138 4.842615E-4 0.03970944 0.00968523 0.0053268764 9.68523E-4 0.0188862 0.008716707 0.0072639226 0.0024213076 0.03970944 0.05762712 9.68523E-4 0.004842615 0.009200969 0.024213076 0.0014527845 9.68523E-4 0.03292978 9.68523E-4 9.68523E-4 4.842615E-4 0.0024213076 0.0072639226 0.0024213076 0.0 0.014043584 0.13753027 0.0072639226 0.0111380145 0.06585956 0.018401938 0.0 4.842615E-4 0.027602905 0.0072639226 0.002905569 4.842615E-4 0.014043584 0.015012107 9.68523E-4 0.0 0.065375306 0.0 0.003874092 0.0 0.017433414 0.021791767 0.0014527845 0.0014527845 0.01937046 0.0111380145 4.842615E-4 0.001937046 0.001937046 0.03486683 0.008716707 0.004842615 0.043099273 0.2 0 255 0 Iteration 8 First 4 genes (1%) aaa:0.062 aac:0.012 aag:0.018 aat:0.040 aca:0.022 acc:0.006 acg:0.000 act:0.040 aga:0.010 agc:0.005 agg:0.001 agt:0.019 ata:0.009 atc:0.007 atg:0.002 att:0.040 caa:0.058 cac:0.001 cag:0.005 cat:0.009 cca:0.024 ccc:0.001 ccg:0.001 cct:0.033 cga:0.001 cgc:0.001 cgg:0.000 cgt:0.002 cta:0.007 ctc:0.002 ctg:0.000 ctt:0.014 gaa:0.138 gac:0.007 gag:0.011 gat:0.066 gca:0.018 gcc:0.000 gcg:0.000 gct:0.028 gga:0.007 ggc:0.003 ggg:0.000 ggt:0.014 gta:0.015 gtc:0.001 gtg:0.000 gtt:0.065 taa:0.000 tac:0.004 tag:0.000 tat:0.017 tca:0.022 tcc:0.001 tcg:0.001 tct:0.019 tga:0.011 tgc:0.000 tgg:0.002 tgt:0.002 tta:0.035 ttc:0.009 ttg:0.005 ttt:0.043 CodonUsageIt8 sphere 0.06198547 0.012106538 0.017917676 0.03970944 0.021791767 0.005811138 4.842615E-4 0.03970944 0.00968523 0.0053268764 9.68523E-4 0.0188862 0.008716707 0.0072639226 0.0024213076 0.03970944 0.05762712 9.68523E-4 0.004842615 0.009200969 0.024213076 0.0014527845 9.68523E-4 0.03292978 9.68523E-4 9.68523E-4 4.842615E-4 0.0024213076 0.0072639226 0.0024213076 0.0 0.014043584 0.13753027 0.0072639226 0.0111380145 0.06585956 0.018401938 0.0 4.842615E-4 0.027602905 0.0072639226 0.002905569 4.842615E-4 0.014043584 0.015012107 9.68523E-4 0.0 0.065375306 0.0 0.003874092 0.0 0.017433414 0.021791767 0.0014527845 0.0014527845 0.01937046 0.0111380145 4.842615E-4 0.001937046 0.001937046 0.03486683 0.008716707 0.004842615 0.043099273 0.2 0 255 0 Iteration 9 First 4 genes (1%) aaa:0.062 aac:0.012 aag:0.018 aat:0.040 aca:0.022 acc:0.006 acg:0.000 act:0.040 aga:0.010 agc:0.005 agg:0.001 agt:0.019 ata:0.009 atc:0.007 atg:0.002 att:0.040 caa:0.058 cac:0.001 cag:0.005 cat:0.009 cca:0.024 ccc:0.001 ccg:0.001 cct:0.033 cga:0.001 cgc:0.001 cgg:0.000 cgt:0.002 cta:0.007 ctc:0.002 ctg:0.000 ctt:0.014 gaa:0.138 gac:0.007 gag:0.011 gat:0.066 gca:0.018 gcc:0.000 gcg:0.000 gct:0.028 gga:0.007 ggc:0.003 ggg:0.000 ggt:0.014 gta:0.015 gtc:0.001 gtg:0.000 gtt:0.065 taa:0.000 tac:0.004 tag:0.000 tat:0.017 tca:0.022 tcc:0.001 tcg:0.001 tct:0.019 tga:0.011 tgc:0.000 tgg:0.002 tgt:0.002 tta:0.035 ttc:0.009 ttg:0.005 ttt:0.043 CodonUsageIt9 sphere 0.06198547 0.012106538 0.017917676 0.03970944 0.021791767 0.005811138 4.842615E-4 0.03970944 0.00968523 0.0053268764 9.68523E-4 0.0188862 0.008716707 0.0072639226 0.0024213076 0.03970944 0.05762712 9.68523E-4 0.004842615 0.009200969 0.024213076 0.0014527845 9.68523E-4 0.03292978 9.68523E-4 9.68523E-4 4.842615E-4 0.0024213076 0.0072639226 0.0024213076 0.0 0.014043584 0.13753027 0.0072639226 0.0111380145 0.06585956 0.018401938 0.0 4.842615E-4 0.027602905 0.0072639226 0.002905569 4.842615E-4 0.014043584 0.015012107 9.68523E-4 0.0 0.065375306 0.0 0.003874092 0.0 0.017433414 0.021791767 0.0014527845 0.0014527845 0.01937046 0.0111380145 4.842615E-4 0.001937046 0.001937046 0.03486683 0.008716707 0.004842615 0.043099273 0.2 0 255 0 Iteration 10 First 4 genes (1%) aaa:0.062 aac:0.012 aag:0.018 aat:0.040 aca:0.022 acc:0.006 acg:0.000 act:0.040 aga:0.010 agc:0.005 agg:0.001 agt:0.019 ata:0.009 atc:0.007 atg:0.002 att:0.040 caa:0.058 cac:0.001 cag:0.005 cat:0.009 cca:0.024 ccc:0.001 ccg:0.001 cct:0.033 cga:0.001 cgc:0.001 cgg:0.000 cgt:0.002 cta:0.007 ctc:0.002 ctg:0.000 ctt:0.014 gaa:0.138 gac:0.007 gag:0.011 gat:0.066 gca:0.018 gcc:0.000 gcg:0.000 gct:0.028 gga:0.007 ggc:0.003 ggg:0.000 ggt:0.014 gta:0.015 gtc:0.001 gtg:0.000 gtt:0.065 taa:0.000 tac:0.004 tag:0.000 tat:0.017 tca:0.022 tcc:0.001 tcg:0.001 tct:0.019 tga:0.011 tgc:0.000 tgg:0.002 tgt:0.002 tta:0.035 ttc:0.009 ttg:0.005 ttt:0.043 CodonUsageIt10 sphere 0.06198547 0.012106538 0.017917676 0.03970944 0.021791767 0.005811138 4.842615E-4 0.03970944 0.00968523 0.0053268764 9.68523E-4 0.0188862 0.008716707 0.0072639226 0.0024213076 0.03970944 0.05762712 9.68523E-4 0.004842615 0.009200969 0.024213076 0.0014527845 9.68523E-4 0.03292978 9.68523E-4 9.68523E-4 4.842615E-4 0.0024213076 0.0072639226 0.0024213076 0.0 0.014043584 0.13753027 0.0072639226 0.0111380145 0.06585956 0.018401938 0.0 4.842615E-4 0.027602905 0.0072639226 0.002905569 4.842615E-4 0.014043584 0.015012107 9.68523E-4 0.0 0.065375306 0.0 0.003874092 0.0 0.017433414 0.021791767 0.0014527845 0.0014527845 0.01937046 0.0111380145 4.842615E-4 0.001937046 0.001937046 0.03486683 0.008716707 0.004842615 0.043099273 0.2 0 255 0 Iteration 11 First 4 genes (1%) aaa:0.062 aac:0.012 aag:0.018 aat:0.040 aca:0.022 acc:0.006 acg:0.000 act:0.040 aga:0.010 agc:0.005 agg:0.001 agt:0.019 ata:0.009 atc:0.007 atg:0.002 att:0.040 caa:0.058 cac:0.001 cag:0.005 cat:0.009 cca:0.024 ccc:0.001 ccg:0.001 cct:0.033 cga:0.001 cgc:0.001 cgg:0.000 cgt:0.002 cta:0.007 ctc:0.002 ctg:0.000 ctt:0.014 gaa:0.138 gac:0.007 gag:0.011 gat:0.066 gca:0.018 gcc:0.000 gcg:0.000 gct:0.028 gga:0.007 ggc:0.003 ggg:0.000 ggt:0.014 gta:0.015 gtc:0.001 gtg:0.000 gtt:0.065 taa:0.000 tac:0.004 tag:0.000 tat:0.017 tca:0.022 tcc:0.001 tcg:0.001 tct:0.019 tga:0.011 tgc:0.000 tgg:0.002 tgt:0.002 tta:0.035 ttc:0.009 ttg:0.005 ttt:0.043 CodonUsageIt11 sphere 0.06198547 0.012106538 0.017917676 0.03970944 0.021791767 0.005811138 4.842615E-4 0.03970944 0.00968523 0.0053268764 9.68523E-4 0.0188862 0.008716707 0.0072639226 0.0024213076 0.03970944 0.05762712 9.68523E-4 0.004842615 0.009200969 0.024213076 0.0014527845 9.68523E-4 0.03292978 9.68523E-4 9.68523E-4 4.842615E-4 0.0024213076 0.0072639226 0.0024213076 0.0 0.014043584 0.13753027 0.0072639226 0.0111380145 0.06585956 0.018401938 0.0 4.842615E-4 0.027602905 0.0072639226 0.002905569 4.842615E-4 0.014043584 0.015012107 9.68523E-4 0.0 0.065375306 0.0 0.003874092 0.0 0.017433414 0.021791767 0.0014527845 0.0014527845 0.01937046 0.0111380145 4.842615E-4 0.001937046 0.001937046 0.03486683 0.008716707 0.004842615 0.043099273 0.2 0 255 0 Iteration 12 First 4 genes (1%) aaa:0.062 aac:0.012 aag:0.018 aat:0.040 aca:0.022 acc:0.006 acg:0.000 act:0.040 aga:0.010 agc:0.005 agg:0.001 agt:0.019 ata:0.009 atc:0.007 atg:0.002 att:0.040 caa:0.058 cac:0.001 cag:0.005 cat:0.009 cca:0.024 ccc:0.001 ccg:0.001 cct:0.033 cga:0.001 cgc:0.001 cgg:0.000 cgt:0.002 cta:0.007 ctc:0.002 ctg:0.000 ctt:0.014 gaa:0.138 gac:0.007 gag:0.011 gat:0.066 gca:0.018 gcc:0.000 gcg:0.000 gct:0.028 gga:0.007 ggc:0.003 ggg:0.000 ggt:0.014 gta:0.015 gtc:0.001 gtg:0.000 gtt:0.065 taa:0.000 tac:0.004 tag:0.000 tat:0.017 tca:0.022 tcc:0.001 tcg:0.001 tct:0.019 tga:0.011 tgc:0.000 tgg:0.002 tgt:0.002 tta:0.035 ttc:0.009 ttg:0.005 ttt:0.043 CodonUsageIt12 sphere 0.06198547 0.012106538 0.017917676 0.03970944 0.021791767 0.005811138 4.842615E-4 0.03970944 0.00968523 0.0053268764 9.68523E-4 0.0188862 0.008716707 0.0072639226 0.0024213076 0.03970944 0.05762712 9.68523E-4 0.004842615 0.009200969 0.024213076 0.0014527845 9.68523E-4 0.03292978 9.68523E-4 9.68523E-4 4.842615E-4 0.0024213076 0.0072639226 0.0024213076 0.0 0.014043584 0.13753027 0.0072639226 0.0111380145 0.06585956 0.018401938 0.0 4.842615E-4 0.027602905 0.0072639226 0.002905569 4.842615E-4 0.014043584 0.015012107 9.68523E-4 0.0 0.065375306 0.0 0.003874092 0.0 0.017433414 0.021791767 0.0014527845 0.0014527845 0.01937046 0.0111380145 4.842615E-4 0.001937046 0.001937046 0.03486683 0.008716707 0.004842615 0.043099273 0.2 0 255 0 Iteration 13 First 4 genes (1%) aaa:0.062 aac:0.012 aag:0.018 aat:0.040 aca:0.022 acc:0.006 acg:0.000 act:0.040 aga:0.010 agc:0.005 agg:0.001 agt:0.019 ata:0.009 atc:0.007 atg:0.002 att:0.040 caa:0.058 cac:0.001 cag:0.005 cat:0.009 cca:0.024 ccc:0.001 ccg:0.001 cct:0.033 cga:0.001 cgc:0.001 cgg:0.000 cgt:0.002 cta:0.007 ctc:0.002 ctg:0.000 ctt:0.014 gaa:0.138 gac:0.007 gag:0.011 gat:0.066 gca:0.018 gcc:0.000 gcg:0.000 gct:0.028 gga:0.007 ggc:0.003 ggg:0.000 ggt:0.014 gta:0.015 gtc:0.001 gtg:0.000 gtt:0.065 taa:0.000 tac:0.004 tag:0.000 tat:0.017 tca:0.022 tcc:0.001 tcg:0.001 tct:0.019 tga:0.011 tgc:0.000 tgg:0.002 tgt:0.002 tta:0.035 ttc:0.009 ttg:0.005 ttt:0.043 CodonUsageIt13 sphere 0.06198547 0.012106538 0.017917676 0.03970944 0.021791767 0.005811138 4.842615E-4 0.03970944 0.00968523 0.0053268764 9.68523E-4 0.0188862 0.008716707 0.0072639226 0.0024213076 0.03970944 0.05762712 9.68523E-4 0.004842615 0.009200969 0.024213076 0.0014527845 9.68523E-4 0.03292978 9.68523E-4 9.68523E-4 4.842615E-4 0.0024213076 0.0072639226 0.0024213076 0.0 0.014043584 0.13753027 0.0072639226 0.0111380145 0.06585956 0.018401938 0.0 4.842615E-4 0.027602905 0.0072639226 0.002905569 4.842615E-4 0.014043584 0.015012107 9.68523E-4 0.0 0.065375306 0.0 0.003874092 0.0 0.017433414 0.021791767 0.0014527845 0.0014527845 0.01937046 0.0111380145 4.842615E-4 0.001937046 0.001937046 0.03486683 0.008716707 0.004842615 0.043099273 0.2 0 255 0 Iteration 14 First 4 genes (1%) aaa:0.062 aac:0.012 aag:0.018 aat:0.040 aca:0.022 acc:0.006 acg:0.000 act:0.040 aga:0.010 agc:0.005 agg:0.001 agt:0.019 ata:0.009 atc:0.007 atg:0.002 att:0.040 caa:0.058 cac:0.001 cag:0.005 cat:0.009 cca:0.024 ccc:0.001 ccg:0.001 cct:0.033 cga:0.001 cgc:0.001 cgg:0.000 cgt:0.002 cta:0.007 ctc:0.002 ctg:0.000 ctt:0.014 gaa:0.138 gac:0.007 gag:0.011 gat:0.066 gca:0.018 gcc:0.000 gcg:0.000 gct:0.028 gga:0.007 ggc:0.003 ggg:0.000 ggt:0.014 gta:0.015 gtc:0.001 gtg:0.000 gtt:0.065 taa:0.000 tac:0.004 tag:0.000 tat:0.017 tca:0.022 tcc:0.001 tcg:0.001 tct:0.019 tga:0.011 tgc:0.000 tgg:0.002 tgt:0.002 tta:0.035 ttc:0.009 ttg:0.005 ttt:0.043 CodonUsageIt14 sphere 0.06198547 0.012106538 0.017917676 0.03970944 0.021791767 0.005811138 4.842615E-4 0.03970944 0.00968523 0.0053268764 9.68523E-4 0.0188862 0.008716707 0.0072639226 0.0024213076 0.03970944 0.05762712 9.68523E-4 0.004842615 0.009200969 0.024213076 0.0014527845 9.68523E-4 0.03292978 9.68523E-4 9.68523E-4 4.842615E-4 0.0024213076 0.0072639226 0.0024213076 0.0 0.014043584 0.13753027 0.0072639226 0.0111380145 0.06585956 0.018401938 0.0 4.842615E-4 0.027602905 0.0072639226 0.002905569 4.842615E-4 0.014043584 0.015012107 9.68523E-4 0.0 0.065375306 0.0 0.003874092 0.0 0.017433414 0.021791767 0.0014527845 0.0014527845 0.01937046 0.0111380145 4.842615E-4 0.001937046 0.001937046 0.03486683 0.008716707 0.004842615 0.043099273 0.2 0 255 0 aaa:1.000 aac:0.305 aag:0.289 aat:1.000 aca:0.549 acc:0.146 acg:0.012 act:1.000 aga:1.000 agc:0.244 agg:0.100 agt:0.867 ata:0.220 atc:0.183 atg:1.000 att:1.000 caa:1.000 cac:0.105 cag:0.084 cat:1.000 cca:0.735 ccc:0.044 ccg:0.029 cct:1.000 cga:0.100 cgc:0.100 cgg:0.050 cgt:0.250 cta:0.208 ctc:0.069 ctg:0.000 ctt:0.403 gaa:1.000 gac:0.110 gag:0.081 gat:1.000 gca:0.667 gcc:0.000 gcg:0.018 gct:1.000 gga:0.517 ggc:0.207 ggg:0.034 ggt:1.000 gta:0.230 gtc:0.015 gtg:0.000 gtt:1.000 taa:0.000 tac:0.222 tag:0.000 tat:1.000 tca:1.000 tcc:0.067 tcg:0.067 tct:0.889 tga:1.000 tgc:0.250 tgg:1.000 tgt:1.000 tta:1.000 ttc:0.202 ttg:0.139 ttt:1.000 ttt:1.000 ttc:0.202 ttg:0.139 tta:1.000 tct:0.889 tcc:0.067 tcg:0.067 tca:1.000 tgt:1.000 tgc:0.250 tgg:1.000 tga:1.000 tat:1.000 tac:0.222 tag:0.000 taa:0.000 ctt:0.403 ctc:0.069 ctg:0.000 cta:0.208 cct:1.000 ccc:0.044 ccg:0.029 cca:0.735 cgt:0.250 cgc:0.100 cgg:0.050 cga:0.100 cat:1.000 cac:0.105 cag:0.084 caa:1.000 gtt:1.000 gtc:0.015 gtg:0.000 gta:0.230 gct:1.000 gcc:0.000 gcg:0.018 gca:0.667 ggt:1.000 ggc:0.207 ggg:0.034 gga:0.517 gat:1.000 gac:0.110 gag:0.081 gaa:1.000 att:1.000 atc:0.183 atg:1.000 ata:0.220 act:1.000 acc:0.146 acg:0.012 aca:0.549 agt:0.867 agc:0.244 agg:0.100 aga:1.000 aat:1.000 aac:0.305 aag:0.289 aaa:1.000 // 0 - CAICLASS // 1 - STRAND // 2 - GC_CONT // 3 - GC_CONT3 // 4 - GC_SKEW // 5 - AT_SKEW // 6 - GENELENGTH // 7 - CAIEXT --- -0.34579918 -0.7099523 -0.94410133 0.2286857 -0.072095506 0.10741533 NaN