AdditionalInfoFile = "" ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 Looking for randomclass.txt... Loading sequence... Loaded... Getting seq... Got NC_000912 689 CDS features found CodonUsage sphere 0.046537302 0.03712362 0.039344262 0.02518819 0.010438274 0.021993142 0.0079416195 0.019417029 0.0040481766 0.010685012 0.0028437604 0.021148378 0.005486785 0.014519907 0.013098026 0.046365842 0.038156573 0.011927066 0.015703412 0.006206089 0.010944296 0.009100034 0.006666109 0.008301271 0.0025050184 0.010789562 0.005018401 0.009785881 0.01070174 0.012299264 0.009576782 0.01015808 0.042162932 0.019270658 0.01473737 0.030511877 0.013834058 0.016552359 0.011140849 0.025317833 0.006440281 0.011885246 0.008987119 0.02803195 0.0138424225 0.0110864835 0.018865004 0.02129893 4.182001E-6 0.018011877 0.0 0.014331716 0.008748746 0.009631148 0.006461191 0.008200903 0.006072265 0.0021160922 0.0058338908 0.0054031448 0.039478086 0.012776012 0.021625126 0.043321345 0.4 255 0 0 aaa:0.047 aac:0.037 aag:0.039 aat:0.025 aca:0.010 acc:0.022 acg:0.008 act:0.019 aga:0.004 agc:0.011 agg:0.003 agt:0.021 ata:0.005 atc:0.015 atg:0.013 att:0.046 caa:0.038 cac:0.012 cag:0.016 cat:0.006 cca:0.011 ccc:0.009 ccg:0.007 cct:0.008 cga:0.003 cgc:0.011 cgg:0.005 cgt:0.010 cta:0.011 ctc:0.012 ctg:0.010 ctt:0.010 gaa:0.042 gac:0.019 gag:0.015 gat:0.031 gca:0.014 gcc:0.017 gcg:0.011 gct:0.025 gga:0.006 ggc:0.012 ggg:0.009 ggt:0.028 gta:0.014 gtc:0.011 gtg:0.019 gtt:0.021 taa:0.000 tac:0.018 tag:0.000 tat:0.014 tca:0.009 tcc:0.010 tcg:0.006 tct:0.008 tga:0.006 tgc:0.002 tgg:0.006 tgt:0.005 tta:0.039 ttc:0.013 ttg:0.022 ttt:0.043 Number of points = 689 Iteration 0 First 344 genes (50%) aaa:0.051 aac:0.039 aag:0.042 aat:0.027 aca:0.011 acc:0.020 acg:0.006 act:0.021 aga:0.004 agc:0.011 agg:0.002 agt:0.022 ata:0.004 atc:0.013 atg:0.013 att:0.047 caa:0.041 cac:0.013 cag:0.014 cat:0.007 cca:0.012 ccc:0.008 ccg:0.006 cct:0.009 cga:0.002 cgc:0.011 cgg:0.004 cgt:0.011 cta:0.010 ctc:0.010 ctg:0.008 ctt:0.009 gaa:0.047 gac:0.020 gag:0.014 gat:0.033 gca:0.015 gcc:0.015 gcg:0.009 gct:0.028 gga:0.006 ggc:0.010 ggg:0.006 ggt:0.030 gta:0.015 gtc:0.010 gtg:0.017 gtt:0.022 taa:0.000 tac:0.019 tag:0.000 tat:0.015 tca:0.008 tcc:0.008 tcg:0.005 tct:0.008 tga:0.006 tgc:0.002 tgg:0.005 tgt:0.005 tta:0.041 ttc:0.011 ttg:0.020 ttt:0.043 CodonUsageIt0 sphere 0.05076413 0.03922536 0.041691598 0.026772864 0.010649309 0.020287862 0.0064930865 0.021144982 0.003687232 0.010536104 0.0023368641 0.021735264 0.004172394 0.012743592 0.012557613 0.046955608 0.04095577 0.012978087 0.014490175 0.0066871513 0.012032021 0.00777068 0.0058623757 0.009161478 0.0019972508 0.0107948575 0.004083448 0.01062505 0.0103016095 0.010398641 0.007762594 0.009476833 0.04731139 0.020021023 0.014118218 0.03326595 0.014781273 0.014579122 0.009048274 0.028115146 0.0057734293 0.010236921 0.006007924 0.029667664 0.014740842 0.009759845 0.01737689 0.022454921 0.0 0.01931754 0.0 0.01456295 0.008223498 0.007924315 0.00456861 0.008077949 0.005749171 0.0018517021 0.0052397507 0.0051265466 0.040947683 0.011166815 0.01976227 0.04309048 0.2 0 255 0 Iteration 1 First 172 genes (25%) aaa:0.054 aac:0.039 aag:0.042 aat:0.030 aca:0.012 acc:0.020 acg:0.005 act:0.025 aga:0.004 agc:0.011 agg:0.002 agt:0.023 ata:0.004 atc:0.012 atg:0.011 att:0.044 caa:0.043 cac:0.011 cag:0.012 cat:0.006 cca:0.013 ccc:0.006 ccg:0.005 cct:0.010 cga:0.002 cgc:0.009 cgg:0.003 cgt:0.010 cta:0.010 ctc:0.009 ctg:0.006 ctt:0.010 gaa:0.050 gac:0.020 gag:0.013 gat:0.036 gca:0.016 gcc:0.013 gcg:0.008 gct:0.031 gga:0.006 ggc:0.010 ggg:0.005 ggt:0.032 gta:0.015 gtc:0.008 gtg:0.016 gtt:0.025 taa:0.000 tac:0.020 tag:0.000 tat:0.015 tca:0.009 tcc:0.007 tcg:0.004 tct:0.009 tga:0.006 tgc:0.001 tgg:0.005 tgt:0.004 tta:0.040 ttc:0.011 ttg:0.017 ttt:0.041 CodonUsageIt1 sphere 0.05429656 0.039457034 0.041741304 0.029596884 0.011947216 0.020443378 0.005373782 0.024995482 0.0035825213 0.010994067 0.0020213309 0.023401422 0.0036482555 0.011519942 0.011404907 0.04446928 0.04305599 0.011125536 0.012243019 0.0060968595 0.012966097 0.0063269297 0.0050451104 0.009745115 0.0018734286 0.009416443 0.003122381 0.0099587515 0.0101723885 0.008611198 0.006047559 0.010090221 0.050204597 0.019950371 0.012604559 0.035562277 0.016006311 0.013031832 0.008101757 0.031355277 0.006063992 0.009942318 0.004700005 0.032226257 0.015398268 0.008282526 0.015957009 0.024781844 0.0 0.019933937 0.0 0.014675191 0.00916994 0.0073951124 0.0042398646 0.00921924 0.0056531527 0.0013968546 0.004847907 0.004223431 0.040443048 0.011059802 0.01738673 0.041396197 0.2 0 255 0 Iteration 2 First 82 genes (12%) aaa:0.060 aac:0.039 aag:0.043 aat:0.033 aca:0.013 acc:0.020 acg:0.005 act:0.028 aga:0.004 agc:0.011 agg:0.001 agt:0.025 ata:0.003 atc:0.011 atg:0.009 att:0.042 caa:0.045 cac:0.009 cag:0.010 cat:0.005 cca:0.014 ccc:0.005 ccg:0.004 cct:0.010 cga:0.002 cgc:0.008 cgg:0.003 cgt:0.009 cta:0.010 ctc:0.007 ctg:0.005 ctt:0.011 gaa:0.056 gac:0.019 gag:0.011 gat:0.036 gca:0.017 gcc:0.011 gcg:0.006 gct:0.033 gga:0.006 ggc:0.010 ggg:0.004 ggt:0.034 gta:0.016 gtc:0.007 gtg:0.013 gtt:0.029 taa:0.000 tac:0.020 tag:0.000 tat:0.014 tca:0.011 tcc:0.007 tcg:0.004 tct:0.012 tga:0.006 tgc:0.001 tgg:0.005 tgt:0.003 tta:0.038 ttc:0.012 ttg:0.015 ttt:0.041 CodonUsageIt2 sphere 0.060350902 0.038930383 0.04262965 0.032764938 0.013493517 0.019729424 0.004826663 0.028008737 0.0044038896 0.011450113 0.0014797068 0.025436865 0.0034526493 0.010956877 0.008983934 0.042488728 0.04477875 0.009124859 0.010040868 0.0050732805 0.013916291 0.004580045 0.0042277337 0.010252255 0.001832018 0.007927001 0.0028184892 0.009301014 0.009618095 0.007328072 0.0047914316 0.010604566 0.05555947 0.018566798 0.011379651 0.03558343 0.016946167 0.010534104 0.006341601 0.032624014 0.006271139 0.010463641 0.003945885 0.03382187 0.015889233 0.0069052987 0.0130002815 0.02903044 0.0 0.019623732 0.0 0.014268602 0.010534104 0.006693912 0.003664036 0.011696731 0.005777903 0.0011626268 0.004826663 0.0032060316 0.038296223 0.011591037 0.015184611 0.04100902 0.2 0 255 0 Iteration 3 First 41 genes (6%) aaa:0.073 aac:0.039 aag:0.040 aat:0.039 aca:0.014 acc:0.018 acg:0.004 act:0.031 aga:0.006 agc:0.014 agg:0.001 agt:0.031 ata:0.004 atc:0.011 atg:0.008 att:0.041 caa:0.042 cac:0.007 cag:0.008 cat:0.005 cca:0.011 ccc:0.003 ccg:0.004 cct:0.011 cga:0.002 cgc:0.007 cgg:0.002 cgt:0.008 cta:0.009 ctc:0.005 ctg:0.003 ctt:0.012 gaa:0.050 gac:0.017 gag:0.007 gat:0.039 gca:0.017 gcc:0.010 gcg:0.005 gct:0.034 gga:0.009 ggc:0.012 ggg:0.003 ggt:0.039 gta:0.013 gtc:0.006 gtg:0.009 gtt:0.028 taa:0.000 tac:0.018 tag:0.000 tat:0.016 tca:0.013 tcc:0.007 tcg:0.003 tct:0.016 tga:0.005 tgc:0.001 tgg:0.003 tgt:0.003 tta:0.036 ttc:0.013 ttg:0.014 ttt:0.042 CodonUsageIt3 sphere 0.07252566 0.038510527 0.040158838 0.03933468 0.014310332 0.01820634 0.0042706225 0.031467747 0.005544317 0.013860793 0.0011987713 0.030943284 0.003671237 0.011238481 0.0076421667 0.041357607 0.041956995 0.007042781 0.00794186 0.0050198548 0.010639095 0.0030718513 0.0035213905 0.010564172 0.0020229265 0.0067430884 0.0020978497 0.0075672437 0.008691092 0.005469394 0.0030718513 0.012362328 0.04959916 0.017382184 0.006892935 0.038960066 0.017382184 0.0099647865 0.0050198548 0.034090057 0.008990784 0.011837866 0.002996928 0.03903499 0.0129617145 0.0057690865 0.008691092 0.028171124 0.0 0.018356185 0.0 0.016183412 0.0127369445 0.0067430884 0.0031467746 0.016108489 0.005094778 6.7430886E-4 0.0033715442 0.0028470817 0.036337756 0.0128118675 0.013710946 0.04210684 0.2 0 255 0 Iteration 4 First 20 genes (3%) aaa:0.079 aac:0.036 aag:0.034 aat:0.045 aca:0.014 acc:0.015 acg:0.003 act:0.030 aga:0.007 agc:0.014 agg:0.001 agt:0.034 ata:0.005 atc:0.011 atg:0.006 att:0.041 caa:0.043 cac:0.004 cag:0.007 cat:0.004 cca:0.009 ccc:0.003 ccg:0.003 cct:0.011 cga:0.002 cgc:0.005 cgg:0.001 cgt:0.007 cta:0.007 ctc:0.004 ctg:0.003 ctt:0.012 gaa:0.048 gac:0.016 gag:0.005 gat:0.043 gca:0.019 gcc:0.010 gcg:0.004 gct:0.033 gga:0.012 ggc:0.013 ggg:0.002 ggt:0.038 gta:0.013 gtc:0.005 gtg:0.006 gtt:0.031 taa:0.000 tac:0.019 tag:0.000 tat:0.017 tca:0.014 tcc:0.007 tcg:0.003 tct:0.020 tga:0.006 tgc:0.001 tgg:0.003 tgt:0.002 tta:0.038 ttc:0.013 ttg:0.013 ttt:0.043 CodonUsageIt4 sphere 0.07908885 0.0360781 0.034380306 0.044567063 0.0141482735 0.014714205 0.0033955858 0.030135823 0.0072156196 0.014289756 9.903791E-4 0.03367289 0.0048104133 0.011460102 0.0062252404 0.041171476 0.042586304 0.004244482 0.006508206 0.0041029993 0.009196378 0.0029711374 0.003254103 0.011318619 0.002122241 0.0050933785 9.903791E-4 0.0072156196 0.0070741368 0.004244482 0.0029711374 0.012308998 0.048387095 0.016129032 0.0049518957 0.04286927 0.019241653 0.009903791 0.0041029993 0.033389926 0.011601585 0.013157895 0.0016977929 0.03820034 0.012733446 0.0045274477 0.006366723 0.031267684 0.0 0.01853424 0.0 0.017260894 0.014006792 0.0070741368 0.003254103 0.019524617 0.006366723 5.6593097E-4 0.0029711374 0.002122241 0.03763441 0.01344086 0.012733446 0.0434352 0.2 0 255 0 Iteration 5 First 6 genes (1%) aaa:0.077 aac:0.023 aag:0.031 aat:0.036 aca:0.011 acc:0.008 acg:0.001 act:0.031 aga:0.009 agc:0.010 agg:0.001 agt:0.033 ata:0.007 atc:0.014 atg:0.009 att:0.041 caa:0.042 cac:0.004 cag:0.007 cat:0.005 cca:0.011 ccc:0.002 ccg:0.001 cct:0.014 cga:0.002 cgc:0.005 cgg:0.000 cgt:0.008 cta:0.008 ctc:0.007 ctg:0.004 ctt:0.017 gaa:0.058 gac:0.017 gag:0.005 gat:0.034 gca:0.020 gcc:0.009 gcg:0.003 gct:0.038 gga:0.011 ggc:0.011 ggg:0.000 ggt:0.033 gta:0.017 gtc:0.004 gtg:0.008 gtt:0.034 taa:0.000 tac:0.024 tag:0.000 tat:0.018 tca:0.012 tcc:0.005 tcg:0.002 tct:0.018 tga:0.005 tgc:0.002 tgg:0.002 tgt:0.004 tta:0.048 ttc:0.010 ttg:0.016 ttt:0.061 CodonUsageIt5 sphere 0.07721423 0.022710068 0.031037092 0.035579108 0.010598032 0.0075700227 7.570023E-4 0.031037092 0.009084027 0.0098410295 7.570023E-4 0.0333081 0.0068130204 0.013626041 0.009084027 0.04087812 0.041635126 0.0037850114 0.0068130204 0.0045420136 0.010598032 0.0022710068 7.570023E-4 0.014383043 0.0015140045 0.005299016 0.0 0.0075700227 0.0075700227 0.0068130204 0.0037850114 0.01665405 0.058289174 0.01665405 0.0045420136 0.0340651 0.02043906 0.009084027 0.003028009 0.03785011 0.010598032 0.010598032 0.0 0.0333081 0.01665405 0.0037850114 0.0075700227 0.0340651 0.0 0.024224073 0.0 0.018168055 0.012112036 0.0045420136 0.0022710068 0.018168055 0.005299016 0.0015140045 0.0015140045 0.0037850114 0.047691144 0.0098410295 0.015897047 0.06056018 0.2 0 255 0 Iteration 6 First 6 genes (1%) aaa:0.077 aac:0.023 aag:0.031 aat:0.036 aca:0.011 acc:0.008 acg:0.001 act:0.031 aga:0.009 agc:0.010 agg:0.001 agt:0.033 ata:0.007 atc:0.014 atg:0.009 att:0.041 caa:0.042 cac:0.004 cag:0.007 cat:0.005 cca:0.011 ccc:0.002 ccg:0.001 cct:0.014 cga:0.002 cgc:0.005 cgg:0.000 cgt:0.008 cta:0.008 ctc:0.007 ctg:0.004 ctt:0.017 gaa:0.058 gac:0.017 gag:0.005 gat:0.034 gca:0.020 gcc:0.009 gcg:0.003 gct:0.038 gga:0.011 ggc:0.011 ggg:0.000 ggt:0.033 gta:0.017 gtc:0.004 gtg:0.008 gtt:0.034 taa:0.000 tac:0.024 tag:0.000 tat:0.018 tca:0.012 tcc:0.005 tcg:0.002 tct:0.018 tga:0.005 tgc:0.002 tgg:0.002 tgt:0.004 tta:0.048 ttc:0.010 ttg:0.016 ttt:0.061 CodonUsageIt6 sphere 0.07721423 0.022710068 0.031037092 0.035579108 0.010598032 0.0075700227 7.570023E-4 0.031037092 0.009084027 0.0098410295 7.570023E-4 0.0333081 0.0068130204 0.013626041 0.009084027 0.04087812 0.041635126 0.0037850114 0.0068130204 0.0045420136 0.010598032 0.0022710068 7.570023E-4 0.014383043 0.0015140045 0.005299016 0.0 0.0075700227 0.0075700227 0.0068130204 0.0037850114 0.01665405 0.058289174 0.01665405 0.0045420136 0.0340651 0.02043906 0.009084027 0.003028009 0.03785011 0.010598032 0.010598032 0.0 0.0333081 0.01665405 0.0037850114 0.0075700227 0.0340651 0.0 0.024224073 0.0 0.018168055 0.012112036 0.0045420136 0.0022710068 0.018168055 0.005299016 0.0015140045 0.0015140045 0.0037850114 0.047691144 0.0098410295 0.015897047 0.06056018 0.2 0 255 0 Iteration 7 First 6 genes (1%) aaa:0.077 aac:0.023 aag:0.031 aat:0.036 aca:0.011 acc:0.008 acg:0.001 act:0.031 aga:0.009 agc:0.010 agg:0.001 agt:0.033 ata:0.007 atc:0.014 atg:0.009 att:0.041 caa:0.042 cac:0.004 cag:0.007 cat:0.005 cca:0.011 ccc:0.002 ccg:0.001 cct:0.014 cga:0.002 cgc:0.005 cgg:0.000 cgt:0.008 cta:0.008 ctc:0.007 ctg:0.004 ctt:0.017 gaa:0.058 gac:0.017 gag:0.005 gat:0.034 gca:0.020 gcc:0.009 gcg:0.003 gct:0.038 gga:0.011 ggc:0.011 ggg:0.000 ggt:0.033 gta:0.017 gtc:0.004 gtg:0.008 gtt:0.034 taa:0.000 tac:0.024 tag:0.000 tat:0.018 tca:0.012 tcc:0.005 tcg:0.002 tct:0.018 tga:0.005 tgc:0.002 tgg:0.002 tgt:0.004 tta:0.048 ttc:0.010 ttg:0.016 ttt:0.061 CodonUsageIt7 sphere 0.07721423 0.022710068 0.031037092 0.035579108 0.010598032 0.0075700227 7.570023E-4 0.031037092 0.009084027 0.0098410295 7.570023E-4 0.0333081 0.0068130204 0.013626041 0.009084027 0.04087812 0.041635126 0.0037850114 0.0068130204 0.0045420136 0.010598032 0.0022710068 7.570023E-4 0.014383043 0.0015140045 0.005299016 0.0 0.0075700227 0.0075700227 0.0068130204 0.0037850114 0.01665405 0.058289174 0.01665405 0.0045420136 0.0340651 0.02043906 0.009084027 0.003028009 0.03785011 0.010598032 0.010598032 0.0 0.0333081 0.01665405 0.0037850114 0.0075700227 0.0340651 0.0 0.024224073 0.0 0.018168055 0.012112036 0.0045420136 0.0022710068 0.018168055 0.005299016 0.0015140045 0.0015140045 0.0037850114 0.047691144 0.0098410295 0.015897047 0.06056018 0.2 0 255 0 Iteration 8 First 6 genes (1%) aaa:0.077 aac:0.023 aag:0.031 aat:0.036 aca:0.011 acc:0.008 acg:0.001 act:0.031 aga:0.009 agc:0.010 agg:0.001 agt:0.033 ata:0.007 atc:0.014 atg:0.009 att:0.041 caa:0.042 cac:0.004 cag:0.007 cat:0.005 cca:0.011 ccc:0.002 ccg:0.001 cct:0.014 cga:0.002 cgc:0.005 cgg:0.000 cgt:0.008 cta:0.008 ctc:0.007 ctg:0.004 ctt:0.017 gaa:0.058 gac:0.017 gag:0.005 gat:0.034 gca:0.020 gcc:0.009 gcg:0.003 gct:0.038 gga:0.011 ggc:0.011 ggg:0.000 ggt:0.033 gta:0.017 gtc:0.004 gtg:0.008 gtt:0.034 taa:0.000 tac:0.024 tag:0.000 tat:0.018 tca:0.012 tcc:0.005 tcg:0.002 tct:0.018 tga:0.005 tgc:0.002 tgg:0.002 tgt:0.004 tta:0.048 ttc:0.010 ttg:0.016 ttt:0.061 CodonUsageIt8 sphere 0.07721423 0.022710068 0.031037092 0.035579108 0.010598032 0.0075700227 7.570023E-4 0.031037092 0.009084027 0.0098410295 7.570023E-4 0.0333081 0.0068130204 0.013626041 0.009084027 0.04087812 0.041635126 0.0037850114 0.0068130204 0.0045420136 0.010598032 0.0022710068 7.570023E-4 0.014383043 0.0015140045 0.005299016 0.0 0.0075700227 0.0075700227 0.0068130204 0.0037850114 0.01665405 0.058289174 0.01665405 0.0045420136 0.0340651 0.02043906 0.009084027 0.003028009 0.03785011 0.010598032 0.010598032 0.0 0.0333081 0.01665405 0.0037850114 0.0075700227 0.0340651 0.0 0.024224073 0.0 0.018168055 0.012112036 0.0045420136 0.0022710068 0.018168055 0.005299016 0.0015140045 0.0015140045 0.0037850114 0.047691144 0.0098410295 0.015897047 0.06056018 0.2 0 255 0 Iteration 9 First 6 genes (1%) aaa:0.077 aac:0.023 aag:0.031 aat:0.036 aca:0.011 acc:0.008 acg:0.001 act:0.031 aga:0.009 agc:0.010 agg:0.001 agt:0.033 ata:0.007 atc:0.014 atg:0.009 att:0.041 caa:0.042 cac:0.004 cag:0.007 cat:0.005 cca:0.011 ccc:0.002 ccg:0.001 cct:0.014 cga:0.002 cgc:0.005 cgg:0.000 cgt:0.008 cta:0.008 ctc:0.007 ctg:0.004 ctt:0.017 gaa:0.058 gac:0.017 gag:0.005 gat:0.034 gca:0.020 gcc:0.009 gcg:0.003 gct:0.038 gga:0.011 ggc:0.011 ggg:0.000 ggt:0.033 gta:0.017 gtc:0.004 gtg:0.008 gtt:0.034 taa:0.000 tac:0.024 tag:0.000 tat:0.018 tca:0.012 tcc:0.005 tcg:0.002 tct:0.018 tga:0.005 tgc:0.002 tgg:0.002 tgt:0.004 tta:0.048 ttc:0.010 ttg:0.016 ttt:0.061 CodonUsageIt9 sphere 0.07721423 0.022710068 0.031037092 0.035579108 0.010598032 0.0075700227 7.570023E-4 0.031037092 0.009084027 0.0098410295 7.570023E-4 0.0333081 0.0068130204 0.013626041 0.009084027 0.04087812 0.041635126 0.0037850114 0.0068130204 0.0045420136 0.010598032 0.0022710068 7.570023E-4 0.014383043 0.0015140045 0.005299016 0.0 0.0075700227 0.0075700227 0.0068130204 0.0037850114 0.01665405 0.058289174 0.01665405 0.0045420136 0.0340651 0.02043906 0.009084027 0.003028009 0.03785011 0.010598032 0.010598032 0.0 0.0333081 0.01665405 0.0037850114 0.0075700227 0.0340651 0.0 0.024224073 0.0 0.018168055 0.012112036 0.0045420136 0.0022710068 0.018168055 0.005299016 0.0015140045 0.0015140045 0.0037850114 0.047691144 0.0098410295 0.015897047 0.06056018 0.2 0 255 0 Iteration 10 First 6 genes (1%) aaa:0.077 aac:0.023 aag:0.031 aat:0.036 aca:0.011 acc:0.008 acg:0.001 act:0.031 aga:0.009 agc:0.010 agg:0.001 agt:0.033 ata:0.007 atc:0.014 atg:0.009 att:0.041 caa:0.042 cac:0.004 cag:0.007 cat:0.005 cca:0.011 ccc:0.002 ccg:0.001 cct:0.014 cga:0.002 cgc:0.005 cgg:0.000 cgt:0.008 cta:0.008 ctc:0.007 ctg:0.004 ctt:0.017 gaa:0.058 gac:0.017 gag:0.005 gat:0.034 gca:0.020 gcc:0.009 gcg:0.003 gct:0.038 gga:0.011 ggc:0.011 ggg:0.000 ggt:0.033 gta:0.017 gtc:0.004 gtg:0.008 gtt:0.034 taa:0.000 tac:0.024 tag:0.000 tat:0.018 tca:0.012 tcc:0.005 tcg:0.002 tct:0.018 tga:0.005 tgc:0.002 tgg:0.002 tgt:0.004 tta:0.048 ttc:0.010 ttg:0.016 ttt:0.061 CodonUsageIt10 sphere 0.07721423 0.022710068 0.031037092 0.035579108 0.010598032 0.0075700227 7.570023E-4 0.031037092 0.009084027 0.0098410295 7.570023E-4 0.0333081 0.0068130204 0.013626041 0.009084027 0.04087812 0.041635126 0.0037850114 0.0068130204 0.0045420136 0.010598032 0.0022710068 7.570023E-4 0.014383043 0.0015140045 0.005299016 0.0 0.0075700227 0.0075700227 0.0068130204 0.0037850114 0.01665405 0.058289174 0.01665405 0.0045420136 0.0340651 0.02043906 0.009084027 0.003028009 0.03785011 0.010598032 0.010598032 0.0 0.0333081 0.01665405 0.0037850114 0.0075700227 0.0340651 0.0 0.024224073 0.0 0.018168055 0.012112036 0.0045420136 0.0022710068 0.018168055 0.005299016 0.0015140045 0.0015140045 0.0037850114 0.047691144 0.0098410295 0.015897047 0.06056018 0.2 0 255 0 Iteration 11 First 6 genes (1%) aaa:0.077 aac:0.023 aag:0.031 aat:0.036 aca:0.011 acc:0.008 acg:0.001 act:0.031 aga:0.009 agc:0.010 agg:0.001 agt:0.033 ata:0.007 atc:0.014 atg:0.009 att:0.041 caa:0.042 cac:0.004 cag:0.007 cat:0.005 cca:0.011 ccc:0.002 ccg:0.001 cct:0.014 cga:0.002 cgc:0.005 cgg:0.000 cgt:0.008 cta:0.008 ctc:0.007 ctg:0.004 ctt:0.017 gaa:0.058 gac:0.017 gag:0.005 gat:0.034 gca:0.020 gcc:0.009 gcg:0.003 gct:0.038 gga:0.011 ggc:0.011 ggg:0.000 ggt:0.033 gta:0.017 gtc:0.004 gtg:0.008 gtt:0.034 taa:0.000 tac:0.024 tag:0.000 tat:0.018 tca:0.012 tcc:0.005 tcg:0.002 tct:0.018 tga:0.005 tgc:0.002 tgg:0.002 tgt:0.004 tta:0.048 ttc:0.010 ttg:0.016 ttt:0.061 CodonUsageIt11 sphere 0.07721423 0.022710068 0.031037092 0.035579108 0.010598032 0.0075700227 7.570023E-4 0.031037092 0.009084027 0.0098410295 7.570023E-4 0.0333081 0.0068130204 0.013626041 0.009084027 0.04087812 0.041635126 0.0037850114 0.0068130204 0.0045420136 0.010598032 0.0022710068 7.570023E-4 0.014383043 0.0015140045 0.005299016 0.0 0.0075700227 0.0075700227 0.0068130204 0.0037850114 0.01665405 0.058289174 0.01665405 0.0045420136 0.0340651 0.02043906 0.009084027 0.003028009 0.03785011 0.010598032 0.010598032 0.0 0.0333081 0.01665405 0.0037850114 0.0075700227 0.0340651 0.0 0.024224073 0.0 0.018168055 0.012112036 0.0045420136 0.0022710068 0.018168055 0.005299016 0.0015140045 0.0015140045 0.0037850114 0.047691144 0.0098410295 0.015897047 0.06056018 0.2 0 255 0 Iteration 12 First 6 genes (1%) aaa:0.077 aac:0.023 aag:0.031 aat:0.036 aca:0.011 acc:0.008 acg:0.001 act:0.031 aga:0.009 agc:0.010 agg:0.001 agt:0.033 ata:0.007 atc:0.014 atg:0.009 att:0.041 caa:0.042 cac:0.004 cag:0.007 cat:0.005 cca:0.011 ccc:0.002 ccg:0.001 cct:0.014 cga:0.002 cgc:0.005 cgg:0.000 cgt:0.008 cta:0.008 ctc:0.007 ctg:0.004 ctt:0.017 gaa:0.058 gac:0.017 gag:0.005 gat:0.034 gca:0.020 gcc:0.009 gcg:0.003 gct:0.038 gga:0.011 ggc:0.011 ggg:0.000 ggt:0.033 gta:0.017 gtc:0.004 gtg:0.008 gtt:0.034 taa:0.000 tac:0.024 tag:0.000 tat:0.018 tca:0.012 tcc:0.005 tcg:0.002 tct:0.018 tga:0.005 tgc:0.002 tgg:0.002 tgt:0.004 tta:0.048 ttc:0.010 ttg:0.016 ttt:0.061 CodonUsageIt12 sphere 0.07721423 0.022710068 0.031037092 0.035579108 0.010598032 0.0075700227 7.570023E-4 0.031037092 0.009084027 0.0098410295 7.570023E-4 0.0333081 0.0068130204 0.013626041 0.009084027 0.04087812 0.041635126 0.0037850114 0.0068130204 0.0045420136 0.010598032 0.0022710068 7.570023E-4 0.014383043 0.0015140045 0.005299016 0.0 0.0075700227 0.0075700227 0.0068130204 0.0037850114 0.01665405 0.058289174 0.01665405 0.0045420136 0.0340651 0.02043906 0.009084027 0.003028009 0.03785011 0.010598032 0.010598032 0.0 0.0333081 0.01665405 0.0037850114 0.0075700227 0.0340651 0.0 0.024224073 0.0 0.018168055 0.012112036 0.0045420136 0.0022710068 0.018168055 0.005299016 0.0015140045 0.0015140045 0.0037850114 0.047691144 0.0098410295 0.015897047 0.06056018 0.2 0 255 0 Iteration 13 First 6 genes (1%) aaa:0.077 aac:0.023 aag:0.031 aat:0.036 aca:0.011 acc:0.008 acg:0.001 act:0.031 aga:0.009 agc:0.010 agg:0.001 agt:0.033 ata:0.007 atc:0.014 atg:0.009 att:0.041 caa:0.042 cac:0.004 cag:0.007 cat:0.005 cca:0.011 ccc:0.002 ccg:0.001 cct:0.014 cga:0.002 cgc:0.005 cgg:0.000 cgt:0.008 cta:0.008 ctc:0.007 ctg:0.004 ctt:0.017 gaa:0.058 gac:0.017 gag:0.005 gat:0.034 gca:0.020 gcc:0.009 gcg:0.003 gct:0.038 gga:0.011 ggc:0.011 ggg:0.000 ggt:0.033 gta:0.017 gtc:0.004 gtg:0.008 gtt:0.034 taa:0.000 tac:0.024 tag:0.000 tat:0.018 tca:0.012 tcc:0.005 tcg:0.002 tct:0.018 tga:0.005 tgc:0.002 tgg:0.002 tgt:0.004 tta:0.048 ttc:0.010 ttg:0.016 ttt:0.061 CodonUsageIt13 sphere 0.07721423 0.022710068 0.031037092 0.035579108 0.010598032 0.0075700227 7.570023E-4 0.031037092 0.009084027 0.0098410295 7.570023E-4 0.0333081 0.0068130204 0.013626041 0.009084027 0.04087812 0.041635126 0.0037850114 0.0068130204 0.0045420136 0.010598032 0.0022710068 7.570023E-4 0.014383043 0.0015140045 0.005299016 0.0 0.0075700227 0.0075700227 0.0068130204 0.0037850114 0.01665405 0.058289174 0.01665405 0.0045420136 0.0340651 0.02043906 0.009084027 0.003028009 0.03785011 0.010598032 0.010598032 0.0 0.0333081 0.01665405 0.0037850114 0.0075700227 0.0340651 0.0 0.024224073 0.0 0.018168055 0.012112036 0.0045420136 0.0022710068 0.018168055 0.005299016 0.0015140045 0.0015140045 0.0037850114 0.047691144 0.0098410295 0.015897047 0.06056018 0.2 0 255 0 Iteration 14 First 6 genes (1%) aaa:0.077 aac:0.023 aag:0.031 aat:0.036 aca:0.011 acc:0.008 acg:0.001 act:0.031 aga:0.009 agc:0.010 agg:0.001 agt:0.033 ata:0.007 atc:0.014 atg:0.009 att:0.041 caa:0.042 cac:0.004 cag:0.007 cat:0.005 cca:0.011 ccc:0.002 ccg:0.001 cct:0.014 cga:0.002 cgc:0.005 cgg:0.000 cgt:0.008 cta:0.008 ctc:0.007 ctg:0.004 ctt:0.017 gaa:0.058 gac:0.017 gag:0.005 gat:0.034 gca:0.020 gcc:0.009 gcg:0.003 gct:0.038 gga:0.011 ggc:0.011 ggg:0.000 ggt:0.033 gta:0.017 gtc:0.004 gtg:0.008 gtt:0.034 taa:0.000 tac:0.024 tag:0.000 tat:0.018 tca:0.012 tcc:0.005 tcg:0.002 tct:0.018 tga:0.005 tgc:0.002 tgg:0.002 tgt:0.004 tta:0.048 ttc:0.010 ttg:0.016 ttt:0.061 CodonUsageIt14 sphere 0.07721423 0.022710068 0.031037092 0.035579108 0.010598032 0.0075700227 7.570023E-4 0.031037092 0.009084027 0.0098410295 7.570023E-4 0.0333081 0.0068130204 0.013626041 0.009084027 0.04087812 0.041635126 0.0037850114 0.0068130204 0.0045420136 0.010598032 0.0022710068 7.570023E-4 0.014383043 0.0015140045 0.005299016 0.0 0.0075700227 0.0075700227 0.0068130204 0.0037850114 0.01665405 0.058289174 0.01665405 0.0045420136 0.0340651 0.02043906 0.009084027 0.003028009 0.03785011 0.010598032 0.010598032 0.0 0.0333081 0.01665405 0.0037850114 0.0075700227 0.0340651 0.0 0.024224073 0.0 0.018168055 0.012112036 0.0045420136 0.0022710068 0.018168055 0.005299016 0.0015140045 0.0015140045 0.0037850114 0.047691144 0.0098410295 0.015897047 0.06056018 0.2 0 255 0 aaa:1.000 aac:0.638 aag:0.402 aat:1.000 aca:0.341 acc:0.244 acg:0.024 act:1.000 aga:1.000 agc:0.295 agg:0.083 agt:1.000 ata:0.167 atc:0.333 atg:1.000 att:1.000 caa:1.000 cac:0.833 cag:0.164 cat:1.000 cca:0.737 ccc:0.158 ccg:0.053 cct:1.000 cga:0.167 cgc:0.583 cgg:0.000 cgt:0.833 cta:0.159 ctc:0.143 ctg:0.079 ctt:0.349 gaa:1.000 gac:0.489 gag:0.078 gat:1.000 gca:0.540 gcc:0.240 gcg:0.080 gct:1.000 gga:0.318 ggc:0.318 ggg:0.000 ggt:1.000 gta:0.489 gtc:0.111 gtg:0.222 gtt:1.000 taa:0.000 tac:1.000 tag:0.000 tat:0.750 tca:0.364 tcc:0.136 tcg:0.068 tct:0.545 tga:1.000 tgc:0.400 tgg:1.000 tgt:1.000 tta:1.000 ttc:0.162 ttg:0.333 ttt:1.000 ttt:1.000 ttc:0.162 ttg:0.333 tta:1.000 tct:0.545 tcc:0.136 tcg:0.068 tca:0.364 tgt:1.000 tgc:0.400 tgg:1.000 tga:1.000 tat:0.750 tac:1.000 tag:0.000 taa:0.000 ctt:0.349 ctc:0.143 ctg:0.079 cta:0.159 cct:1.000 ccc:0.158 ccg:0.053 cca:0.737 cgt:0.833 cgc:0.583 cgg:0.000 cga:0.167 cat:1.000 cac:0.833 cag:0.164 caa:1.000 gtt:1.000 gtc:0.111 gtg:0.222 gta:0.489 gct:1.000 gcc:0.240 gcg:0.080 gca:0.540 ggt:1.000 ggc:0.318 ggg:0.000 gga:0.318 gat:1.000 gac:0.489 gag:0.078 gaa:1.000 att:1.000 atc:0.333 atg:1.000 ata:0.167 act:1.000 acc:0.244 acg:0.024 aca:0.341 agt:1.000 agc:0.295 agg:0.083 aga:1.000 aat:1.000 aac:0.638 aag:0.402 aaa:1.000 // 0 - CAICLASS // 1 - STRAND // 2 - GC_CONT // 3 - GC_CONT3 // 4 - GC_SKEW // 5 - AT_SKEW // 6 - GENELENGTH // 7 - CAIEXT --- -0.054937128 -0.82508403 -0.8807965 0.16065934 0.14625527 -0.10564066 NaN