AdditionalInfoFile = "" ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 Looking for randomclass.txt... Loading sequence... Loaded... Getting seq... Got NC_000868 1769 CDS features found CodonUsage sphere 0.024586884 0.020451978 0.053677093 0.013001294 0.008105237 0.010966569 0.011950269 0.011112441 0.016937964 0.014039229 0.03686069 0.007471256 0.04855662 0.015393218 0.020773644 0.021200038 0.007351566 0.0093601085 0.00936385 0.0057114433 0.016971625 0.009937986 0.0064931666 0.00924416 8.771011E-4 0.0011651044 6.41462E-4 0.0010098818 0.01863045 0.020790476 0.010641163 0.021368353 0.03574234 0.018555645 0.052923422 0.027594088 0.016870638 0.019387862 0.010366251 0.020257482 0.030255314 0.010960959 0.016135668 0.015475505 0.013646496 0.015000486 0.013556729 0.039276924 1.122091E-5 0.02429327 1.3091061E-5 0.014069151 0.008989819 0.007226266 0.005266347 0.0068858983 1.3091061E-5 0.0030651786 0.011821228 0.002491042 0.016857548 0.027192004 0.014749886 0.01640684 0.4 255 0 0 aaa:0.025 aac:0.020 aag:0.054 aat:0.013 aca:0.008 acc:0.011 acg:0.012 act:0.011 aga:0.017 agc:0.014 agg:0.037 agt:0.007 ata:0.049 atc:0.015 atg:0.021 att:0.021 caa:0.007 cac:0.009 cag:0.009 cat:0.006 cca:0.017 ccc:0.010 ccg:0.006 cct:0.009 cga:0.001 cgc:0.001 cgg:0.001 cgt:0.001 cta:0.019 ctc:0.021 ctg:0.011 ctt:0.021 gaa:0.036 gac:0.019 gag:0.053 gat:0.028 gca:0.017 gcc:0.019 gcg:0.010 gct:0.020 gga:0.030 ggc:0.011 ggg:0.016 ggt:0.015 gta:0.014 gtc:0.015 gtg:0.014 gtt:0.039 taa:0.000 tac:0.024 tag:0.000 tat:0.014 tca:0.009 tcc:0.007 tcg:0.005 tct:0.007 tga:0.000 tgc:0.003 tgg:0.012 tgt:0.002 tta:0.017 ttc:0.027 ttg:0.015 ttt:0.016 Number of points = 1769 Iteration 0 First 884 genes (50%) aaa:0.019 aac:0.022 aag:0.062 aat:0.010 aca:0.007 acc:0.012 acg:0.013 act:0.011 aga:0.015 agc:0.015 agg:0.041 agt:0.006 ata:0.051 atc:0.013 atg:0.022 att:0.017 caa:0.007 cac:0.011 cag:0.011 cat:0.005 cca:0.019 ccc:0.010 ccg:0.007 cct:0.008 cga:0.000 cgc:0.001 cgg:0.000 cgt:0.001 cta:0.018 ctc:0.021 ctg:0.010 ctt:0.020 gaa:0.035 gac:0.021 gag:0.062 gat:0.028 gca:0.017 gcc:0.022 gcg:0.011 gct:0.022 gga:0.032 ggc:0.011 ggg:0.015 ggt:0.016 gta:0.012 gtc:0.016 gtg:0.012 gtt:0.041 taa:0.000 tac:0.026 tag:0.000 tat:0.011 tca:0.007 tcc:0.006 tcg:0.004 tct:0.005 tga:0.000 tgc:0.003 tgg:0.012 tgt:0.003 tta:0.014 ttc:0.028 ttg:0.014 ttt:0.012 CodonUsageIt0 sphere 0.019156994 0.021623198 0.061788596 0.0098121185 0.0068013826 0.011733791 0.012552345 0.010546359 0.015000984 0.015292572 0.04124041 0.0061233523 0.05148464 0.013093364 0.021970997 0.016659172 0.00731781 0.011266546 0.011192772 0.005343442 0.018721368 0.010307468 0.0066538323 0.008396335 2.6348332E-4 7.7639753E-4 2.1078666E-4 5.5858464E-4 0.018292768 0.020583317 0.009966696 0.019575054 0.0347798 0.020945167 0.06152511 0.027792221 0.017203704 0.021566989 0.010816868 0.021686433 0.032057136 0.0106377 0.015282032 0.015601725 0.012095641 0.015703605 0.012334532 0.04093828 0.0 0.026148085 0.0 0.010925775 0.007131615 0.005505045 0.004187628 0.004809449 0.0 0.003351508 0.011751356 0.002634833 0.014210533 0.02838945 0.013553582 0.012127259 0.2 0 255 0 Iteration 1 First 442 genes (25%) aaa:0.017 aac:0.022 aag:0.069 aat:0.008 aca:0.007 acc:0.012 acg:0.013 act:0.010 aga:0.014 agc:0.016 agg:0.043 agt:0.005 ata:0.052 atc:0.013 atg:0.022 att:0.015 caa:0.007 cac:0.012 cag:0.012 cat:0.005 cca:0.020 ccc:0.010 ccg:0.006 cct:0.008 cga:0.000 cgc:0.001 cgg:0.000 cgt:0.000 cta:0.018 ctc:0.020 ctg:0.010 ctt:0.019 gaa:0.035 gac:0.024 gag:0.068 gat:0.028 gca:0.018 gcc:0.023 gcg:0.011 gct:0.022 gga:0.032 ggc:0.011 ggg:0.014 ggt:0.016 gta:0.011 gtc:0.016 gtg:0.012 gtt:0.042 taa:0.000 tac:0.027 tag:0.000 tat:0.009 tca:0.006 tcc:0.004 tcg:0.003 tct:0.004 tga:0.000 tgc:0.003 tgg:0.012 tgt:0.002 tta:0.013 ttc:0.028 ttg:0.013 ttt:0.010 CodonUsageIt1 sphere 0.016773852 0.022185696 0.06862421 0.007931153 0.0066535557 0.011792656 0.012625247 0.0103356205 0.014355029 0.0157044 0.043330655 0.005174988 0.05206569 0.012811863 0.022415377 0.015201976 0.007148804 0.012395567 0.012316614 0.0046294965 0.019608969 0.0096752895 0.00632339 0.0077947807 9.330769E-5 5.7420117E-4 7.895266E-5 4.3782836E-4 0.018001206 0.020341076 0.009653756 0.018891217 0.034523845 0.02350636 0.06799977 0.027597543 0.017577732 0.022659414 0.010952887 0.022415377 0.032435186 0.010507881 0.014283254 0.015539318 0.01134765 0.016300134 0.011749591 0.041643936 0.0 0.026944388 0.0 0.009266171 0.0059286267 0.0040696505 0.0033231892 0.0036748874 0.0 0.00251213 0.011850076 0.002232207 0.0129482355 0.02789182 0.012546295 0.009826017 0.2 0 255 0 Iteration 2 First 212 genes (12%) aaa:0.014 aac:0.023 aag:0.075 aat:0.007 aca:0.007 acc:0.012 acg:0.013 act:0.010 aga:0.013 agc:0.016 agg:0.043 agt:0.004 ata:0.052 atc:0.013 atg:0.023 att:0.014 caa:0.006 cac:0.013 cag:0.014 cat:0.004 cca:0.022 ccc:0.010 ccg:0.006 cct:0.007 cga:0.000 cgc:0.001 cgg:0.000 cgt:0.000 cta:0.018 ctc:0.021 ctg:0.009 ctt:0.018 gaa:0.033 gac:0.026 gag:0.071 gat:0.027 gca:0.019 gcc:0.023 gcg:0.010 gct:0.023 gga:0.034 ggc:0.010 ggg:0.013 ggt:0.016 gta:0.011 gtc:0.017 gtg:0.011 gtt:0.043 taa:0.000 tac:0.028 tag:0.000 tat:0.008 tca:0.006 tcc:0.003 tcg:0.003 tct:0.002 tga:0.000 tgc:0.002 tgg:0.013 tgt:0.002 tta:0.011 ttc:0.029 ttg:0.012 ttt:0.008 CodonUsageIt2 sphere 0.013835123 0.02258727 0.07457838 0.0065641096 0.0067155887 0.011950046 0.012875753 0.009762009 0.0134311775 0.016006328 0.043457773 0.004022621 0.05163766 0.012926246 0.023344666 0.014272731 0.0062611504 0.013178712 0.014020264 0.0036355068 0.021543743 0.009644192 0.005991854 0.0072373515 3.36621E-5 5.5542466E-4 3.36621E-5 2.692968E-4 0.018295351 0.02102198 0.008684821 0.017723095 0.032584913 0.026256438 0.070606254 0.026559398 0.019456694 0.022957552 0.010485744 0.023327835 0.03383041 0.009762009 0.012741105 0.01635978 0.011243141 0.01684788 0.011125324 0.043222137 0.0 0.027788064 0.0 0.008247214 0.0055374154 0.0031978996 0.0025414885 0.002373178 0.0 0.0024573333 0.012623288 0.0019355707 0.011495607 0.028646447 0.011731242 0.007961087 0.2 0 255 0 Iteration 3 First 106 genes (6%) aaa:0.011 aac:0.023 aag:0.080 aat:0.006 aca:0.007 acc:0.012 acg:0.012 act:0.009 aga:0.014 agc:0.016 agg:0.043 agt:0.003 ata:0.050 atc:0.015 atg:0.023 att:0.013 caa:0.006 cac:0.014 cag:0.016 cat:0.003 cca:0.024 ccc:0.009 ccg:0.006 cct:0.006 cga:0.000 cgc:0.001 cgg:0.000 cgt:0.000 cta:0.017 ctc:0.022 ctg:0.008 ctt:0.017 gaa:0.031 gac:0.029 gag:0.076 gat:0.025 gca:0.021 gcc:0.022 gcg:0.010 gct:0.024 gga:0.034 ggc:0.009 ggg:0.010 ggt:0.018 gta:0.011 gtc:0.018 gtg:0.010 gtt:0.043 taa:0.000 tac:0.027 tag:0.000 tat:0.007 tca:0.005 tcc:0.002 tcg:0.002 tct:0.002 tga:0.000 tgc:0.003 tgg:0.014 tgt:0.002 tta:0.011 ttc:0.029 ttg:0.010 ttt:0.007 CodonUsageIt3 sphere 0.010604135 0.02341607 0.080484375 0.005619857 0.006589951 0.012377066 0.012377066 0.00939988 0.013581321 0.016023282 0.043420084 0.0034455075 0.050010037 0.01508664 0.023282263 0.013380611 0.005954372 0.014116545 0.01619054 0.002910283 0.023549877 0.008663946 0.005720211 0.00612163 0.0 5.68676E-4 6.6903056E-5 2.341607E-4 0.01726099 0.022345621 0.0084632365 0.016525054 0.030942664 0.029236635 0.076068774 0.024754131 0.021107914 0.022412524 0.009667492 0.023917843 0.03391985 0.009299525 0.010403425 0.017528601 0.011273165 0.017829664 0.010403425 0.042851407 0.0 0.027162641 0.0 0.006824112 0.0049842778 0.002274704 0.0018063826 0.0019736402 0.0 0.0026092192 0.013949287 0.0020070917 0.010604135 0.02910283 0.010436877 0.0068575633 0.2 0 255 0 Iteration 4 First 53 genes (3%) aaa:0.008 aac:0.024 aag:0.086 aat:0.004 aca:0.007 acc:0.014 acg:0.011 act:0.008 aga:0.013 agc:0.018 agg:0.043 agt:0.003 ata:0.045 atc:0.018 atg:0.025 att:0.015 caa:0.006 cac:0.014 cag:0.018 cat:0.001 cca:0.027 ccc:0.008 ccg:0.005 cct:0.006 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.016 ctc:0.025 ctg:0.008 ctt:0.016 gaa:0.027 gac:0.030 gag:0.079 gat:0.023 gca:0.023 gcc:0.023 gcg:0.009 gct:0.026 gga:0.036 ggc:0.008 ggg:0.010 ggt:0.020 gta:0.011 gtc:0.019 gtg:0.009 gtt:0.045 taa:0.000 tac:0.027 tag:0.000 tat:0.005 tca:0.005 tcc:0.002 tcg:0.001 tct:0.001 tga:0.000 tgc:0.002 tgg:0.012 tgt:0.002 tta:0.009 ttc:0.028 ttg:0.008 ttt:0.005 CodonUsageIt4 sphere 0.007853587 0.023630882 0.08624921 0.0043475213 0.0070822523 0.014234626 0.011149288 0.007993829 0.012691957 0.018091299 0.04333497 0.003155459 0.04536849 0.017951054 0.024963187 0.014865718 0.0056798263 0.014234626 0.018441904 0.0013323049 0.026856462 0.008344436 0.004698128 0.006030433 0.0 2.8048523E-4 7.012131E-5 2.1036393E-4 0.015566931 0.0246827 0.007923708 0.015847417 0.026856462 0.029661315 0.0789566 0.02299979 0.02299979 0.022929668 0.008765164 0.025734521 0.03646308 0.007923708 0.010307833 0.019984573 0.01128953 0.019213239 0.00911577 0.045228247 0.0 0.026646098 0.0 0.0054694624 0.0053993408 0.0018932754 0.0012621835 0.0014024262 0.0 0.0021036393 0.01234135 0.0017530328 0.008835285 0.02783816 0.008134072 0.0053292196 0.2 0 255 0 Iteration 5 First 17 genes (1%) aaa:0.004 aac:0.026 aag:0.092 aat:0.002 aca:0.008 acc:0.019 acg:0.009 act:0.008 aga:0.012 agc:0.017 agg:0.041 agt:0.003 ata:0.037 atc:0.029 atg:0.026 att:0.019 caa:0.003 cac:0.017 cag:0.029 cat:0.001 cca:0.032 ccc:0.006 ccg:0.004 cct:0.004 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.001 cta:0.013 ctc:0.028 ctg:0.004 ctt:0.013 gaa:0.018 gac:0.038 gag:0.079 gat:0.017 gca:0.032 gcc:0.028 gcg:0.006 gct:0.032 gga:0.032 ggc:0.005 ggg:0.003 ggt:0.030 gta:0.011 gtc:0.027 gtg:0.005 gtt:0.051 taa:0.000 tac:0.023 tag:0.000 tat:0.004 tca:0.005 tcc:0.001 tcg:0.000 tct:0.000 tga:0.000 tgc:0.002 tgg:0.010 tgt:0.002 tta:0.006 ttc:0.019 ttg:0.005 ttt:0.002 CodonUsageIt5 sphere 0.0037593986 0.026026605 0.09167149 0.002313476 0.0078079817 0.019086177 0.008675535 0.008097166 0.012145749 0.0167727 0.041353382 0.0026026606 0.037015617 0.028629266 0.02573742 0.019375362 0.0026026606 0.01735107 0.02891845 5.78369E-4 0.031810295 0.0060728746 0.0037593986 0.0043377676 0.0 0.0 0.0 5.78369E-4 0.012724118 0.02834008 0.004048583 0.013013302 0.018218623 0.03788317 0.078947365 0.01735107 0.03152111 0.02834008 0.00578369 0.03152111 0.032099478 0.005205321 0.003470214 0.030075189 0.010699826 0.027472528 0.0054945056 0.050607286 0.0 0.022845576 0.0 0.0043377676 0.0054945056 8.675535E-4 0.0 2.891845E-4 0.0 0.0020242915 0.009543088 0.0020242915 0.00578369 0.019375362 0.005205321 0.002313476 0.2 0 255 0 Iteration 6 First 17 genes (1%) aaa:0.004 aac:0.026 aag:0.090 aat:0.002 aca:0.009 acc:0.019 acg:0.008 act:0.008 aga:0.014 agc:0.018 agg:0.041 agt:0.002 ata:0.033 atc:0.030 atg:0.025 att:0.020 caa:0.003 cac:0.017 cag:0.024 cat:0.000 cca:0.036 ccc:0.005 ccg:0.002 cct:0.005 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.013 ctc:0.028 ctg:0.003 ctt:0.013 gaa:0.019 gac:0.039 gag:0.081 gat:0.016 gca:0.033 gcc:0.025 gcg:0.007 gct:0.031 gga:0.032 ggc:0.005 ggg:0.003 ggt:0.033 gta:0.013 gtc:0.028 gtg:0.007 gtt:0.049 taa:0.000 tac:0.021 tag:0.000 tat:0.004 tca:0.007 tcc:0.001 tcg:0.000 tct:0.001 tga:0.000 tgc:0.002 tgg:0.010 tgt:0.002 tta:0.005 ttc:0.020 ttg:0.003 ttt:0.003 CodonUsageIt6 sphere 0.004192355 0.02564735 0.09001233 0.002219482 0.008877928 0.018988902 0.007891492 0.008138102 0.013810111 0.018495684 0.040690504 0.0024660912 0.033045623 0.029839704 0.02540074 0.01972873 0.0029593094 0.01726264 0.024167694 4.9321825E-4 0.035758324 0.0046855733 0.002219482 0.0046855733 0.0 2.4660912E-4 0.0 4.9321825E-4 0.013070283 0.02836005 0.0034525278 0.013070283 0.019235512 0.03871763 0.08138101 0.015536374 0.03329223 0.024660913 0.0066584465 0.031319357 0.032305796 0.0054254006 0.0027127003 0.032552406 0.012577065 0.02811344 0.0066584465 0.048582 0.0 0.021208385 0.0 0.004192355 0.0069050556 9.864365E-4 2.4660912E-4 9.864365E-4 0.0 0.001972873 0.009864365 0.0024660912 0.0046855733 0.020221949 0.0034525278 0.0027127003 0.2 0 255 0 Iteration 7 First 17 genes (1%) aaa:0.004 aac:0.026 aag:0.090 aat:0.002 aca:0.009 acc:0.019 acg:0.008 act:0.008 aga:0.014 agc:0.018 agg:0.041 agt:0.002 ata:0.033 atc:0.030 atg:0.025 att:0.020 caa:0.003 cac:0.017 cag:0.024 cat:0.000 cca:0.036 ccc:0.005 ccg:0.002 cct:0.005 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.013 ctc:0.028 ctg:0.003 ctt:0.013 gaa:0.019 gac:0.039 gag:0.081 gat:0.016 gca:0.033 gcc:0.025 gcg:0.007 gct:0.031 gga:0.032 ggc:0.005 ggg:0.003 ggt:0.033 gta:0.013 gtc:0.028 gtg:0.007 gtt:0.049 taa:0.000 tac:0.021 tag:0.000 tat:0.004 tca:0.007 tcc:0.001 tcg:0.000 tct:0.001 tga:0.000 tgc:0.002 tgg:0.010 tgt:0.002 tta:0.005 ttc:0.020 ttg:0.003 ttt:0.003 CodonUsageIt7 sphere 0.004192355 0.02564735 0.09001233 0.002219482 0.008877928 0.018988902 0.007891492 0.008138102 0.013810111 0.018495684 0.040690504 0.0024660912 0.033045623 0.029839704 0.02540074 0.01972873 0.0029593094 0.01726264 0.024167694 4.9321825E-4 0.035758324 0.0046855733 0.002219482 0.0046855733 0.0 2.4660912E-4 0.0 4.9321825E-4 0.013070283 0.02836005 0.0034525278 0.013070283 0.019235512 0.03871763 0.08138101 0.015536374 0.03329223 0.024660913 0.0066584465 0.031319357 0.032305796 0.0054254006 0.0027127003 0.032552406 0.012577065 0.02811344 0.0066584465 0.048582 0.0 0.021208385 0.0 0.004192355 0.0069050556 9.864365E-4 2.4660912E-4 9.864365E-4 0.0 0.001972873 0.009864365 0.0024660912 0.0046855733 0.020221949 0.0034525278 0.0027127003 0.2 0 255 0 Iteration 8 First 17 genes (1%) aaa:0.004 aac:0.026 aag:0.090 aat:0.002 aca:0.009 acc:0.019 acg:0.008 act:0.008 aga:0.014 agc:0.018 agg:0.041 agt:0.002 ata:0.033 atc:0.030 atg:0.025 att:0.020 caa:0.003 cac:0.017 cag:0.024 cat:0.000 cca:0.036 ccc:0.005 ccg:0.002 cct:0.005 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.013 ctc:0.028 ctg:0.003 ctt:0.013 gaa:0.019 gac:0.039 gag:0.081 gat:0.016 gca:0.033 gcc:0.025 gcg:0.007 gct:0.031 gga:0.032 ggc:0.005 ggg:0.003 ggt:0.033 gta:0.013 gtc:0.028 gtg:0.007 gtt:0.049 taa:0.000 tac:0.021 tag:0.000 tat:0.004 tca:0.007 tcc:0.001 tcg:0.000 tct:0.001 tga:0.000 tgc:0.002 tgg:0.010 tgt:0.002 tta:0.005 ttc:0.020 ttg:0.003 ttt:0.003 CodonUsageIt8 sphere 0.004192355 0.02564735 0.09001233 0.002219482 0.008877928 0.018988902 0.007891492 0.008138102 0.013810111 0.018495684 0.040690504 0.0024660912 0.033045623 0.029839704 0.02540074 0.01972873 0.0029593094 0.01726264 0.024167694 4.9321825E-4 0.035758324 0.0046855733 0.002219482 0.0046855733 0.0 2.4660912E-4 0.0 4.9321825E-4 0.013070283 0.02836005 0.0034525278 0.013070283 0.019235512 0.03871763 0.08138101 0.015536374 0.03329223 0.024660913 0.0066584465 0.031319357 0.032305796 0.0054254006 0.0027127003 0.032552406 0.012577065 0.02811344 0.0066584465 0.048582 0.0 0.021208385 0.0 0.004192355 0.0069050556 9.864365E-4 2.4660912E-4 9.864365E-4 0.0 0.001972873 0.009864365 0.0024660912 0.0046855733 0.020221949 0.0034525278 0.0027127003 0.2 0 255 0 Iteration 9 First 17 genes (1%) aaa:0.004 aac:0.026 aag:0.090 aat:0.002 aca:0.009 acc:0.019 acg:0.008 act:0.008 aga:0.014 agc:0.018 agg:0.041 agt:0.002 ata:0.033 atc:0.030 atg:0.025 att:0.020 caa:0.003 cac:0.017 cag:0.024 cat:0.000 cca:0.036 ccc:0.005 ccg:0.002 cct:0.005 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.013 ctc:0.028 ctg:0.003 ctt:0.013 gaa:0.019 gac:0.039 gag:0.081 gat:0.016 gca:0.033 gcc:0.025 gcg:0.007 gct:0.031 gga:0.032 ggc:0.005 ggg:0.003 ggt:0.033 gta:0.013 gtc:0.028 gtg:0.007 gtt:0.049 taa:0.000 tac:0.021 tag:0.000 tat:0.004 tca:0.007 tcc:0.001 tcg:0.000 tct:0.001 tga:0.000 tgc:0.002 tgg:0.010 tgt:0.002 tta:0.005 ttc:0.020 ttg:0.003 ttt:0.003 CodonUsageIt9 sphere 0.004192355 0.02564735 0.09001233 0.002219482 0.008877928 0.018988902 0.007891492 0.008138102 0.013810111 0.018495684 0.040690504 0.0024660912 0.033045623 0.029839704 0.02540074 0.01972873 0.0029593094 0.01726264 0.024167694 4.9321825E-4 0.035758324 0.0046855733 0.002219482 0.0046855733 0.0 2.4660912E-4 0.0 4.9321825E-4 0.013070283 0.02836005 0.0034525278 0.013070283 0.019235512 0.03871763 0.08138101 0.015536374 0.03329223 0.024660913 0.0066584465 0.031319357 0.032305796 0.0054254006 0.0027127003 0.032552406 0.012577065 0.02811344 0.0066584465 0.048582 0.0 0.021208385 0.0 0.004192355 0.0069050556 9.864365E-4 2.4660912E-4 9.864365E-4 0.0 0.001972873 0.009864365 0.0024660912 0.0046855733 0.020221949 0.0034525278 0.0027127003 0.2 0 255 0 Iteration 10 First 17 genes (1%) aaa:0.004 aac:0.026 aag:0.090 aat:0.002 aca:0.009 acc:0.019 acg:0.008 act:0.008 aga:0.014 agc:0.018 agg:0.041 agt:0.002 ata:0.033 atc:0.030 atg:0.025 att:0.020 caa:0.003 cac:0.017 cag:0.024 cat:0.000 cca:0.036 ccc:0.005 ccg:0.002 cct:0.005 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.013 ctc:0.028 ctg:0.003 ctt:0.013 gaa:0.019 gac:0.039 gag:0.081 gat:0.016 gca:0.033 gcc:0.025 gcg:0.007 gct:0.031 gga:0.032 ggc:0.005 ggg:0.003 ggt:0.033 gta:0.013 gtc:0.028 gtg:0.007 gtt:0.049 taa:0.000 tac:0.021 tag:0.000 tat:0.004 tca:0.007 tcc:0.001 tcg:0.000 tct:0.001 tga:0.000 tgc:0.002 tgg:0.010 tgt:0.002 tta:0.005 ttc:0.020 ttg:0.003 ttt:0.003 CodonUsageIt10 sphere 0.004192355 0.02564735 0.09001233 0.002219482 0.008877928 0.018988902 0.007891492 0.008138102 0.013810111 0.018495684 0.040690504 0.0024660912 0.033045623 0.029839704 0.02540074 0.01972873 0.0029593094 0.01726264 0.024167694 4.9321825E-4 0.035758324 0.0046855733 0.002219482 0.0046855733 0.0 2.4660912E-4 0.0 4.9321825E-4 0.013070283 0.02836005 0.0034525278 0.013070283 0.019235512 0.03871763 0.08138101 0.015536374 0.03329223 0.024660913 0.0066584465 0.031319357 0.032305796 0.0054254006 0.0027127003 0.032552406 0.012577065 0.02811344 0.0066584465 0.048582 0.0 0.021208385 0.0 0.004192355 0.0069050556 9.864365E-4 2.4660912E-4 9.864365E-4 0.0 0.001972873 0.009864365 0.0024660912 0.0046855733 0.020221949 0.0034525278 0.0027127003 0.2 0 255 0 Iteration 11 First 17 genes (1%) aaa:0.004 aac:0.026 aag:0.090 aat:0.002 aca:0.009 acc:0.019 acg:0.008 act:0.008 aga:0.014 agc:0.018 agg:0.041 agt:0.002 ata:0.033 atc:0.030 atg:0.025 att:0.020 caa:0.003 cac:0.017 cag:0.024 cat:0.000 cca:0.036 ccc:0.005 ccg:0.002 cct:0.005 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.013 ctc:0.028 ctg:0.003 ctt:0.013 gaa:0.019 gac:0.039 gag:0.081 gat:0.016 gca:0.033 gcc:0.025 gcg:0.007 gct:0.031 gga:0.032 ggc:0.005 ggg:0.003 ggt:0.033 gta:0.013 gtc:0.028 gtg:0.007 gtt:0.049 taa:0.000 tac:0.021 tag:0.000 tat:0.004 tca:0.007 tcc:0.001 tcg:0.000 tct:0.001 tga:0.000 tgc:0.002 tgg:0.010 tgt:0.002 tta:0.005 ttc:0.020 ttg:0.003 ttt:0.003 CodonUsageIt11 sphere 0.004192355 0.02564735 0.09001233 0.002219482 0.008877928 0.018988902 0.007891492 0.008138102 0.013810111 0.018495684 0.040690504 0.0024660912 0.033045623 0.029839704 0.02540074 0.01972873 0.0029593094 0.01726264 0.024167694 4.9321825E-4 0.035758324 0.0046855733 0.002219482 0.0046855733 0.0 2.4660912E-4 0.0 4.9321825E-4 0.013070283 0.02836005 0.0034525278 0.013070283 0.019235512 0.03871763 0.08138101 0.015536374 0.03329223 0.024660913 0.0066584465 0.031319357 0.032305796 0.0054254006 0.0027127003 0.032552406 0.012577065 0.02811344 0.0066584465 0.048582 0.0 0.021208385 0.0 0.004192355 0.0069050556 9.864365E-4 2.4660912E-4 9.864365E-4 0.0 0.001972873 0.009864365 0.0024660912 0.0046855733 0.020221949 0.0034525278 0.0027127003 0.2 0 255 0 Iteration 12 First 17 genes (1%) aaa:0.004 aac:0.026 aag:0.090 aat:0.002 aca:0.009 acc:0.019 acg:0.008 act:0.008 aga:0.014 agc:0.018 agg:0.041 agt:0.002 ata:0.033 atc:0.030 atg:0.025 att:0.020 caa:0.003 cac:0.017 cag:0.024 cat:0.000 cca:0.036 ccc:0.005 ccg:0.002 cct:0.005 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.013 ctc:0.028 ctg:0.003 ctt:0.013 gaa:0.019 gac:0.039 gag:0.081 gat:0.016 gca:0.033 gcc:0.025 gcg:0.007 gct:0.031 gga:0.032 ggc:0.005 ggg:0.003 ggt:0.033 gta:0.013 gtc:0.028 gtg:0.007 gtt:0.049 taa:0.000 tac:0.021 tag:0.000 tat:0.004 tca:0.007 tcc:0.001 tcg:0.000 tct:0.001 tga:0.000 tgc:0.002 tgg:0.010 tgt:0.002 tta:0.005 ttc:0.020 ttg:0.003 ttt:0.003 CodonUsageIt12 sphere 0.004192355 0.02564735 0.09001233 0.002219482 0.008877928 0.018988902 0.007891492 0.008138102 0.013810111 0.018495684 0.040690504 0.0024660912 0.033045623 0.029839704 0.02540074 0.01972873 0.0029593094 0.01726264 0.024167694 4.9321825E-4 0.035758324 0.0046855733 0.002219482 0.0046855733 0.0 2.4660912E-4 0.0 4.9321825E-4 0.013070283 0.02836005 0.0034525278 0.013070283 0.019235512 0.03871763 0.08138101 0.015536374 0.03329223 0.024660913 0.0066584465 0.031319357 0.032305796 0.0054254006 0.0027127003 0.032552406 0.012577065 0.02811344 0.0066584465 0.048582 0.0 0.021208385 0.0 0.004192355 0.0069050556 9.864365E-4 2.4660912E-4 9.864365E-4 0.0 0.001972873 0.009864365 0.0024660912 0.0046855733 0.020221949 0.0034525278 0.0027127003 0.2 0 255 0 Iteration 13 First 17 genes (1%) aaa:0.004 aac:0.026 aag:0.090 aat:0.002 aca:0.009 acc:0.019 acg:0.008 act:0.008 aga:0.014 agc:0.018 agg:0.041 agt:0.002 ata:0.033 atc:0.030 atg:0.025 att:0.020 caa:0.003 cac:0.017 cag:0.024 cat:0.000 cca:0.036 ccc:0.005 ccg:0.002 cct:0.005 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.013 ctc:0.028 ctg:0.003 ctt:0.013 gaa:0.019 gac:0.039 gag:0.081 gat:0.016 gca:0.033 gcc:0.025 gcg:0.007 gct:0.031 gga:0.032 ggc:0.005 ggg:0.003 ggt:0.033 gta:0.013 gtc:0.028 gtg:0.007 gtt:0.049 taa:0.000 tac:0.021 tag:0.000 tat:0.004 tca:0.007 tcc:0.001 tcg:0.000 tct:0.001 tga:0.000 tgc:0.002 tgg:0.010 tgt:0.002 tta:0.005 ttc:0.020 ttg:0.003 ttt:0.003 CodonUsageIt13 sphere 0.004192355 0.02564735 0.09001233 0.002219482 0.008877928 0.018988902 0.007891492 0.008138102 0.013810111 0.018495684 0.040690504 0.0024660912 0.033045623 0.029839704 0.02540074 0.01972873 0.0029593094 0.01726264 0.024167694 4.9321825E-4 0.035758324 0.0046855733 0.002219482 0.0046855733 0.0 2.4660912E-4 0.0 4.9321825E-4 0.013070283 0.02836005 0.0034525278 0.013070283 0.019235512 0.03871763 0.08138101 0.015536374 0.03329223 0.024660913 0.0066584465 0.031319357 0.032305796 0.0054254006 0.0027127003 0.032552406 0.012577065 0.02811344 0.0066584465 0.048582 0.0 0.021208385 0.0 0.004192355 0.0069050556 9.864365E-4 2.4660912E-4 9.864365E-4 0.0 0.001972873 0.009864365 0.0024660912 0.0046855733 0.020221949 0.0034525278 0.0027127003 0.2 0 255 0 Iteration 14 First 17 genes (1%) aaa:0.004 aac:0.026 aag:0.090 aat:0.002 aca:0.009 acc:0.019 acg:0.008 act:0.008 aga:0.014 agc:0.018 agg:0.041 agt:0.002 ata:0.033 atc:0.030 atg:0.025 att:0.020 caa:0.003 cac:0.017 cag:0.024 cat:0.000 cca:0.036 ccc:0.005 ccg:0.002 cct:0.005 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.013 ctc:0.028 ctg:0.003 ctt:0.013 gaa:0.019 gac:0.039 gag:0.081 gat:0.016 gca:0.033 gcc:0.025 gcg:0.007 gct:0.031 gga:0.032 ggc:0.005 ggg:0.003 ggt:0.033 gta:0.013 gtc:0.028 gtg:0.007 gtt:0.049 taa:0.000 tac:0.021 tag:0.000 tat:0.004 tca:0.007 tcc:0.001 tcg:0.000 tct:0.001 tga:0.000 tgc:0.002 tgg:0.010 tgt:0.002 tta:0.005 ttc:0.020 ttg:0.003 ttt:0.003 CodonUsageIt14 sphere 0.004192355 0.02564735 0.09001233 0.002219482 0.008877928 0.018988902 0.007891492 0.008138102 0.013810111 0.018495684 0.040690504 0.0024660912 0.033045623 0.029839704 0.02540074 0.01972873 0.0029593094 0.01726264 0.024167694 4.9321825E-4 0.035758324 0.0046855733 0.002219482 0.0046855733 0.0 2.4660912E-4 0.0 4.9321825E-4 0.013070283 0.02836005 0.0034525278 0.013070283 0.019235512 0.03871763 0.08138101 0.015536374 0.03329223 0.024660913 0.0066584465 0.031319357 0.032305796 0.0054254006 0.0027127003 0.032552406 0.012577065 0.02811344 0.0066584465 0.048582 0.0 0.021208385 0.0 0.004192355 0.0069050556 9.864365E-4 2.4660912E-4 9.864365E-4 0.0 0.001972873 0.009864365 0.0024660912 0.0046855733 0.020221949 0.0034525278 0.0027127003 0.2 0 255 0 aaa:0.047 aac:1.000 aag:1.000 aat:0.087 aca:0.468 acc:1.000 acg:0.416 act:0.429 aga:0.339 agc:1.000 agg:1.000 agt:0.133 ata:1.000 atc:0.903 atg:1.000 att:0.597 caa:0.122 cac:1.000 cag:1.000 cat:0.029 cca:1.000 ccc:0.131 ccg:0.062 cct:0.131 cga:0.000 cgc:0.006 cgg:0.000 cgt:0.012 cta:0.461 ctc:1.000 ctg:0.122 ctt:0.461 gaa:0.236 gac:1.000 gag:1.000 gat:0.401 gca:1.000 gcc:0.741 gcg:0.200 gct:0.941 gga:0.992 ggc:0.167 ggg:0.083 ggt:1.000 gta:0.259 gtc:0.579 gtg:0.137 gtt:1.000 taa:0.000 tac:1.000 tag:0.000 tat:0.198 tca:0.373 tcc:0.053 tcg:0.013 tct:0.053 tga:0.000 tgc:0.800 tgg:1.000 tgt:1.000 tta:0.165 ttc:1.000 ttg:0.122 ttt:0.134 ttt:0.134 ttc:1.000 ttg:0.122 tta:0.165 tct:0.053 tcc:0.053 tcg:0.013 tca:0.373 tgt:1.000 tgc:0.800 tgg:1.000 tga:0.000 tat:0.198 tac:1.000 tag:0.000 taa:0.000 ctt:0.461 ctc:1.000 ctg:0.122 cta:0.461 cct:0.131 ccc:0.131 ccg:0.062 cca:1.000 cgt:0.012 cgc:0.006 cgg:0.000 cga:0.000 cat:0.029 cac:1.000 cag:1.000 caa:0.122 gtt:1.000 gtc:0.579 gtg:0.137 gta:0.259 gct:0.941 gcc:0.741 gcg:0.200 gca:1.000 ggt:1.000 ggc:0.167 ggg:0.083 gga:0.992 gat:0.401 gac:1.000 gag:1.000 gaa:0.236 att:0.597 atc:0.903 atg:1.000 ata:1.000 act:0.429 acc:1.000 acg:0.416 aca:0.468 agt:0.133 agc:1.000 agg:1.000 aga:0.339 aat:0.087 aac:1.000 aag:1.000 aaa:0.047 // 0 - CAICLASS // 1 - STRAND // 2 - GC_CONT // 3 - GC_CONT3 // 4 - GC_SKEW // 5 - AT_SKEW // 6 - GENELENGTH // 7 - CAIEXT --- -0.029670516 0.60284525 0.56198955 0.2168083 0.40407044 0.05620865 NaN