AdditionalInfoFile = "" ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 Looking for randomclass.txt... Loading sequence... Loaded... Getting seq... Got NC_003413 2065 CDS features found CodonUsage sphere 0.038261887 0.016994357 0.04284041 0.017900055 0.016016202 0.0076423716 0.0057602436 0.014970767 0.028061133 0.010906337 0.021238202 0.010307713 0.040897902 0.013683813 0.01900932 0.032808717 0.009600406 0.008109884 0.007982224 0.0070558237 0.020001277 0.009250202 0.0030500481 0.010721747 0.0012403759 0.0011247915 7.452606E-4 0.001155844 0.017875904 0.017109942 0.0082962 0.024369331 0.048652407 0.016078308 0.040563222 0.027767858 0.024883423 0.013799397 0.0059362077 0.021305483 0.037275106 0.007723453 0.01413925 0.012493466 0.019276718 0.0106924195 0.013913256 0.03555169 5.175421E-6 0.01849523 1.3801123E-5 0.021557353 0.010305988 0.0062967623 0.0025273305 0.009127717 5.865477E-5 0.0022582086 0.0124330865 0.0037332035 0.019659698 0.018377919 0.014054718 0.026054794 0.4 255 0 0 aaa:0.038 aac:0.017 aag:0.043 aat:0.018 aca:0.016 acc:0.008 acg:0.006 act:0.015 aga:0.028 agc:0.011 agg:0.021 agt:0.010 ata:0.041 atc:0.014 atg:0.019 att:0.033 caa:0.010 cac:0.008 cag:0.008 cat:0.007 cca:0.020 ccc:0.009 ccg:0.003 cct:0.011 cga:0.001 cgc:0.001 cgg:0.001 cgt:0.001 cta:0.018 ctc:0.017 ctg:0.008 ctt:0.024 gaa:0.049 gac:0.016 gag:0.041 gat:0.028 gca:0.025 gcc:0.014 gcg:0.006 gct:0.021 gga:0.037 ggc:0.008 ggg:0.014 ggt:0.012 gta:0.019 gtc:0.011 gtg:0.014 gtt:0.036 taa:0.000 tac:0.018 tag:0.000 tat:0.022 tca:0.010 tcc:0.006 tcg:0.003 tct:0.009 tga:0.000 tgc:0.002 tgg:0.012 tgt:0.004 tta:0.020 ttc:0.018 ttg:0.014 ttt:0.026 Number of points = 2065 Iteration 0 First 1032 genes (50%) aaa:0.042 aac:0.017 aag:0.046 aat:0.019 aca:0.017 acc:0.007 acg:0.005 act:0.015 aga:0.031 agc:0.010 agg:0.020 agt:0.011 ata:0.042 atc:0.012 atg:0.019 att:0.033 caa:0.011 cac:0.008 cag:0.008 cat:0.007 cca:0.022 ccc:0.009 ccg:0.002 cct:0.010 cga:0.001 cgc:0.001 cgg:0.000 cgt:0.001 cta:0.018 ctc:0.015 ctg:0.007 ctt:0.024 gaa:0.056 gac:0.017 gag:0.042 gat:0.030 gca:0.026 gcc:0.013 gcg:0.005 gct:0.021 gga:0.039 ggc:0.006 ggg:0.012 ggt:0.011 gta:0.020 gtc:0.009 gtg:0.012 gtt:0.035 taa:0.000 tac:0.018 tag:0.000 tat:0.022 tca:0.010 tcc:0.005 tcg:0.002 tct:0.008 tga:0.000 tgc:0.002 tgg:0.012 tgt:0.004 tta:0.020 ttc:0.017 ttg:0.013 ttt:0.025 CodonUsageIt0 sphere 0.04151922 0.017212618 0.045737803 0.018864233 0.01675494 0.0067026396 0.004735957 0.015086743 0.03145697 0.010244658 0.020223996 0.010509978 0.041867454 0.011577889 0.018930562 0.03283995 0.0107719805 0.008148632 0.00793306 0.0073924707 0.021693204 0.008646106 0.0021457733 0.0104602305 7.627942E-4 5.538549E-4 4.046126E-4 7.826932E-4 0.018161135 0.014920918 0.006573296 0.023908624 0.055999044 0.01698378 0.042252168 0.030193385 0.026150575 0.0126756495 0.0047260076 0.021480948 0.03869025 0.0060393405 0.012274354 0.01117991 0.01983265 0.00935252 0.012138378 0.035320688 0.0 0.017889183 0.0 0.022482531 0.009893109 0.0051870006 0.0017710092 0.00837747 0.0 0.001916935 0.012121795 0.0040162774 0.019524215 0.016589116 0.012765195 0.02465152 0.2 0 255 0 Iteration 1 First 516 genes (25%) aaa:0.045 aac:0.017 aag:0.049 aat:0.018 aca:0.017 acc:0.006 acg:0.004 act:0.014 aga:0.033 agc:0.010 agg:0.019 agt:0.010 ata:0.043 atc:0.011 atg:0.019 att:0.034 caa:0.011 cac:0.008 cag:0.008 cat:0.007 cca:0.022 ccc:0.008 ccg:0.002 cct:0.009 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.019 ctc:0.014 ctg:0.006 ctt:0.024 gaa:0.062 gac:0.017 gag:0.044 gat:0.031 gca:0.028 gcc:0.013 gcg:0.004 gct:0.022 gga:0.040 ggc:0.005 ggg:0.011 ggt:0.010 gta:0.020 gtc:0.009 gtg:0.012 gtt:0.036 taa:0.000 tac:0.017 tag:0.000 tat:0.021 tca:0.009 tcc:0.004 tcg:0.001 tct:0.007 tga:0.000 tgc:0.001 tgg:0.011 tgt:0.003 tta:0.020 ttc:0.015 ttg:0.012 ttt:0.023 CodonUsageIt1 sphere 0.044860438 0.016722616 0.04871472 0.018268991 0.017352045 0.0060456297 0.0042039664 0.013932923 0.03330536 0.010171888 0.019131543 0.0104127815 0.043096483 0.0112442495 0.019139314 0.033522937 0.011376352 0.007739649 0.007716337 0.0070092008 0.021579323 0.007871752 0.0017328733 0.009270484 4.895561E-4 3.0305856E-4 2.3312197E-4 4.895561E-4 0.019279188 0.014368084 0.0060456297 0.024462266 0.06176178 0.016784782 0.044223238 0.030935286 0.028083427 0.012666293 0.0042039664 0.021594865 0.039514173 0.0052607856 0.010995586 0.010335074 0.020040719 0.008835322 0.011694952 0.036087282 0.0 0.016839176 0.0 0.021486076 0.009076215 0.004118488 0.0013831904 0.007257864 0.0 0.0012433172 0.011182084 0.002991732 0.020328235 0.01549484 0.012013552 0.023475382 0.2 0 255 0 Iteration 2 First 247 genes (12%) aaa:0.048 aac:0.016 aag:0.052 aat:0.018 aca:0.016 acc:0.005 acg:0.004 act:0.013 aga:0.035 agc:0.010 agg:0.019 agt:0.010 ata:0.044 atc:0.011 atg:0.019 att:0.034 caa:0.012 cac:0.008 cag:0.008 cat:0.007 cca:0.022 ccc:0.007 ccg:0.001 cct:0.009 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.021 ctc:0.015 ctg:0.006 ctt:0.025 gaa:0.068 gac:0.016 gag:0.047 gat:0.031 gca:0.030 gcc:0.013 gcg:0.003 gct:0.022 gga:0.040 ggc:0.005 ggg:0.010 ggt:0.009 gta:0.020 gtc:0.009 gtg:0.011 gtt:0.035 taa:0.000 tac:0.016 tag:0.000 tat:0.021 tca:0.009 tcc:0.003 tcg:0.001 tct:0.006 tga:0.000 tgc:0.001 tgg:0.011 tgt:0.002 tta:0.021 ttc:0.014 ttg:0.011 ttt:0.022 CodonUsageIt2 sphere 0.047838844 0.01595874 0.051744435 0.01797694 0.016313793 0.0052697477 0.003531852 0.012819315 0.034739222 0.010277877 0.019285034 0.010091006 0.043578196 0.010670304 0.019247659 0.03401043 0.011866275 0.007699064 0.007717751 0.006596528 0.021938594 0.007082391 0.0013641545 0.008502607 2.0555753E-4 1.4949638E-4 1.8687049E-4 3.9242802E-4 0.02057444 0.014538524 0.0062788483 0.024592156 0.068076916 0.016126923 0.04722217 0.030852316 0.029637659 0.012856689 0.003494478 0.02216284 0.039597854 0.004765197 0.009904135 0.009362211 0.020013828 0.008558668 0.010801114 0.035225086 0.0 0.015883991 0.0 0.021097677 0.008558668 0.003176798 9.717265E-4 0.006353596 0.0 8.7829126E-4 0.010520808 0.0024666903 0.02070525 0.014220843 0.011417787 0.022050716 0.2 0 255 0 Iteration 3 First 123 genes (6%) aaa:0.048 aac:0.015 aag:0.054 aat:0.016 aca:0.016 acc:0.005 acg:0.003 act:0.012 aga:0.037 agc:0.010 agg:0.019 agt:0.010 ata:0.045 atc:0.010 atg:0.020 att:0.034 caa:0.012 cac:0.008 cag:0.008 cat:0.006 cca:0.021 ccc:0.006 ccg:0.001 cct:0.007 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.021 ctc:0.015 ctg:0.007 ctt:0.025 gaa:0.075 gac:0.016 gag:0.052 gat:0.032 gca:0.031 gcc:0.013 gcg:0.003 gct:0.022 gga:0.038 ggc:0.004 ggg:0.008 ggt:0.008 gta:0.022 gtc:0.008 gtg:0.011 gtt:0.036 taa:0.000 tac:0.014 tag:0.000 tat:0.019 tca:0.008 tcc:0.002 tcg:0.001 tct:0.006 tga:0.000 tgc:0.000 tgg:0.010 tgt:0.002 tta:0.022 ttc:0.014 ttg:0.011 ttt:0.021 CodonUsageIt3 sphere 0.048469387 0.014622813 0.054209184 0.016353862 0.01644497 0.0051020407 0.002869898 0.012345117 0.036898687 0.010112974 0.019269316 0.01029519 0.04477952 0.00961188 0.020180393 0.034211006 0.012481779 0.0080174925 0.008199709 0.005512026 0.020772595 0.005876458 0.0010477406 0.007197522 9.1107875E-5 1.3666181E-4 1.8221575E-4 2.7332362E-4 0.021045918 0.014622813 0.0069241985 0.025282435 0.07461735 0.015625 0.051521502 0.032206632 0.030612245 0.012663994 0.0033254374 0.021820335 0.037809767 0.0040543005 0.007880831 0.007789723 0.021501457 0.00833637 0.010796282 0.036260933 0.0 0.014395044 0.0 0.018950438 0.008063046 0.002186589 7.28863E-4 0.006468659 0.0 4.5553935E-4 0.010021866 0.0015943878 0.021820335 0.013711735 0.010750729 0.02059038 0.2 0 255 0 Iteration 4 First 61 genes (3%) aaa:0.049 aac:0.015 aag:0.056 aat:0.015 aca:0.018 acc:0.004 acg:0.003 act:0.010 aga:0.035 agc:0.011 agg:0.018 agt:0.010 ata:0.045 atc:0.010 atg:0.020 att:0.032 caa:0.013 cac:0.009 cag:0.007 cat:0.005 cca:0.020 ccc:0.006 ccg:0.001 cct:0.005 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.020 ctc:0.015 ctg:0.006 ctt:0.027 gaa:0.078 gac:0.016 gag:0.057 gat:0.032 gca:0.035 gcc:0.013 gcg:0.003 gct:0.023 gga:0.036 ggc:0.002 ggg:0.007 ggt:0.008 gta:0.023 gtc:0.007 gtg:0.011 gtt:0.036 taa:0.000 tac:0.015 tag:0.000 tat:0.019 tca:0.007 tcc:0.002 tcg:0.001 tct:0.004 tga:0.000 tgc:0.001 tgg:0.009 tgt:0.002 tta:0.023 ttc:0.016 ttg:0.010 ttt:0.020 CodonUsageIt4 sphere 0.049319904 0.014536393 0.055965114 0.015470875 0.01806666 0.003841761 0.0028034472 0.010486969 0.035095006 0.0111099575 0.017755166 0.009863981 0.044647492 0.010279306 0.020247119 0.0317724 0.013082754 0.008514173 0.007060534 0.0045685805 0.019935625 0.0057107257 8.30651E-4 0.004880075 0.0 1.0383138E-4 0.0 3.1149414E-4 0.019935625 0.014847887 0.0061260513 0.026788495 0.07797737 0.016093863 0.057003427 0.03239539 0.035095006 0.013290416 0.0025957844 0.022739071 0.03613332 0.0023881218 0.006541377 0.007683522 0.022842903 0.007475859 0.011213789 0.035925657 0.0 0.015470875 0.0 0.019208806 0.0072681964 0.0015574706 7.268196E-4 0.004153255 0.0 6.229883E-4 0.009448655 0.0015574706 0.02263524 0.015678538 0.009863981 0.020454781 0.2 0 255 0 Iteration 5 First 20 genes (1%) aaa:0.051 aac:0.011 aag:0.061 aat:0.012 aca:0.016 acc:0.003 acg:0.004 act:0.006 aga:0.033 agc:0.011 agg:0.020 agt:0.009 ata:0.045 atc:0.009 atg:0.018 att:0.033 caa:0.015 cac:0.011 cag:0.006 cat:0.003 cca:0.022 ccc:0.003 ccg:0.000 cct:0.004 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.017 ctc:0.014 ctg:0.005 ctt:0.028 gaa:0.086 gac:0.015 gag:0.071 gat:0.028 gca:0.039 gcc:0.015 gcg:0.001 gct:0.024 gga:0.042 ggc:0.001 ggg:0.004 ggt:0.008 gta:0.023 gtc:0.008 gtg:0.010 gtt:0.039 taa:0.000 tac:0.013 tag:0.000 tat:0.018 tca:0.004 tcc:0.002 tcg:0.000 tct:0.002 tga:0.000 tgc:0.001 tgg:0.010 tgt:0.001 tta:0.021 ttc:0.016 ttg:0.009 ttt:0.020 CodonUsageIt5 sphere 0.050617777 0.010761259 0.06098047 0.01155839 0.015544041 0.0031885214 0.0035870865 0.0059784777 0.033479474 0.010761259 0.019529693 0.008768434 0.045037862 0.009166999 0.017935432 0.033479474 0.014746911 0.011159824 0.0059784777 0.0031885214 0.021921083 0.0031885214 3.9856517E-4 0.004384217 0.0 0.0 0.0 3.9856517E-4 0.016739737 0.014348346 0.005181347 0.028298127 0.08569151 0.015145476 0.07054603 0.028298127 0.03945795 0.014746911 0.0011956955 0.023515346 0.042247906 0.0011956955 0.003985652 0.007971304 0.022718213 0.007971304 0.009565564 0.03945795 0.0 0.0127540855 0.0 0.018333998 0.003985652 0.0015942607 3.9856517E-4 0.0015942607 0.0 7.9713034E-4 0.010362694 7.9713034E-4 0.020725388 0.015942607 0.009166999 0.019529693 0.2 0 255 0 Iteration 6 First 20 genes (1%) aaa:0.049 aac:0.011 aag:0.063 aat:0.011 aca:0.016 acc:0.003 acg:0.004 act:0.006 aga:0.036 agc:0.010 agg:0.020 agt:0.008 ata:0.042 atc:0.008 atg:0.018 att:0.035 caa:0.013 cac:0.011 cag:0.006 cat:0.004 cca:0.023 ccc:0.004 ccg:0.000 cct:0.004 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.016 ctc:0.012 ctg:0.005 ctt:0.028 gaa:0.086 gac:0.017 gag:0.073 gat:0.031 gca:0.040 gcc:0.014 gcg:0.001 gct:0.024 gga:0.041 ggc:0.001 ggg:0.005 ggt:0.008 gta:0.022 gtc:0.008 gtg:0.010 gtt:0.040 taa:0.000 tac:0.013 tag:0.000 tat:0.018 tca:0.004 tcc:0.002 tcg:0.001 tct:0.001 tga:0.000 tgc:0.001 tgg:0.009 tgt:0.001 tta:0.020 ttc:0.013 ttg:0.010 ttt:0.020 CodonUsageIt6 sphere 0.048644338 0.011164274 0.06299841 0.011164274 0.016347688 0.0031897926 0.0039872406 0.0059808614 0.03628389 0.009968102 0.020334927 0.008373206 0.04186603 0.008373206 0.017942583 0.03508772 0.0127591705 0.010765551 0.005582137 0.0039872406 0.022727273 0.0039872406 3.9872408E-4 0.004385965 0.0 0.0 0.0 3.9872408E-4 0.015948962 0.012360446 0.004784689 0.027910685 0.086124405 0.016746411 0.073365234 0.030701755 0.039872408 0.014354067 7.9744816E-4 0.02352472 0.041467305 0.0011961722 0.004784689 0.007575758 0.022328548 0.007974481 0.009569378 0.039872408 0.0 0.013157895 0.0 0.018341308 0.0035885167 0.0015948963 7.9744816E-4 0.0011961722 0.0 7.9744816E-4 0.009170654 7.9744816E-4 0.019936204 0.013157895 0.009569378 0.019936204 0.2 0 255 0 Iteration 7 First 20 genes (1%) aaa:0.048 aac:0.011 aag:0.065 aat:0.012 aca:0.017 acc:0.003 acg:0.005 act:0.005 aga:0.038 agc:0.010 agg:0.020 agt:0.008 ata:0.040 atc:0.008 atg:0.018 att:0.036 caa:0.013 cac:0.011 cag:0.006 cat:0.004 cca:0.023 ccc:0.004 ccg:0.000 cct:0.005 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.017 ctc:0.012 ctg:0.005 ctt:0.027 gaa:0.086 gac:0.017 gag:0.072 gat:0.030 gca:0.041 gcc:0.014 gcg:0.000 gct:0.025 gga:0.041 ggc:0.001 ggg:0.005 ggt:0.007 gta:0.024 gtc:0.008 gtg:0.010 gtt:0.039 taa:0.000 tac:0.012 tag:0.000 tat:0.019 tca:0.003 tcc:0.002 tcg:0.001 tct:0.001 tga:0.000 tgc:0.001 tgg:0.010 tgt:0.001 tta:0.019 ttc:0.012 ttg:0.009 ttt:0.020 CodonUsageIt7 sphere 0.047817048 0.011226611 0.06486487 0.011642411 0.016632017 0.0033264034 0.004989605 0.0054054055 0.037837837 0.00956341 0.01995842 0.007900208 0.04033264 0.008316008 0.017879417 0.035758834 0.012889813 0.011226611 0.0058212057 0.0037422038 0.023284823 0.0037422038 4.1580043E-4 0.004573805 0.0 0.0 0.0 4.1580043E-4 0.016632017 0.011642411 0.004989605 0.027442828 0.08607069 0.017047817 0.07193347 0.02993763 0.04116424 0.013721414 4.1580043E-4 0.024948025 0.04116424 0.0012474012 0.004573805 0.006652807 0.023700623 0.008316008 0.00997921 0.038669437 0.0 0.012058212 0.0 0.01912682 0.0029106028 0.0016632017 8.3160086E-4 0.0012474012 0.0 8.3160086E-4 0.00997921 8.3160086E-4 0.01912682 0.012474013 0.00914761 0.01995842 0.2 0 255 0 Iteration 8 First 20 genes (1%) aaa:0.048 aac:0.011 aag:0.065 aat:0.012 aca:0.017 acc:0.003 acg:0.005 act:0.005 aga:0.038 agc:0.010 agg:0.020 agt:0.008 ata:0.040 atc:0.008 atg:0.018 att:0.036 caa:0.013 cac:0.011 cag:0.006 cat:0.004 cca:0.023 ccc:0.004 ccg:0.000 cct:0.005 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.017 ctc:0.012 ctg:0.005 ctt:0.027 gaa:0.086 gac:0.017 gag:0.072 gat:0.030 gca:0.041 gcc:0.014 gcg:0.000 gct:0.025 gga:0.041 ggc:0.001 ggg:0.005 ggt:0.007 gta:0.024 gtc:0.008 gtg:0.010 gtt:0.039 taa:0.000 tac:0.012 tag:0.000 tat:0.019 tca:0.003 tcc:0.002 tcg:0.001 tct:0.001 tga:0.000 tgc:0.001 tgg:0.010 tgt:0.001 tta:0.019 ttc:0.012 ttg:0.009 ttt:0.020 CodonUsageIt8 sphere 0.047817048 0.011226611 0.06486487 0.011642411 0.016632017 0.0033264034 0.004989605 0.0054054055 0.037837837 0.00956341 0.01995842 0.007900208 0.04033264 0.008316008 0.017879417 0.035758834 0.012889813 0.011226611 0.0058212057 0.0037422038 0.023284823 0.0037422038 4.1580043E-4 0.004573805 0.0 0.0 0.0 4.1580043E-4 0.016632017 0.011642411 0.004989605 0.027442828 0.08607069 0.017047817 0.07193347 0.02993763 0.04116424 0.013721414 4.1580043E-4 0.024948025 0.04116424 0.0012474012 0.004573805 0.006652807 0.023700623 0.008316008 0.00997921 0.038669437 0.0 0.012058212 0.0 0.01912682 0.0029106028 0.0016632017 8.3160086E-4 0.0012474012 0.0 8.3160086E-4 0.00997921 8.3160086E-4 0.01912682 0.012474013 0.00914761 0.01995842 0.2 0 255 0 Iteration 9 First 20 genes (1%) aaa:0.048 aac:0.011 aag:0.065 aat:0.012 aca:0.017 acc:0.003 acg:0.005 act:0.005 aga:0.038 agc:0.010 agg:0.020 agt:0.008 ata:0.040 atc:0.008 atg:0.018 att:0.036 caa:0.013 cac:0.011 cag:0.006 cat:0.004 cca:0.023 ccc:0.004 ccg:0.000 cct:0.005 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.017 ctc:0.012 ctg:0.005 ctt:0.027 gaa:0.086 gac:0.017 gag:0.072 gat:0.030 gca:0.041 gcc:0.014 gcg:0.000 gct:0.025 gga:0.041 ggc:0.001 ggg:0.005 ggt:0.007 gta:0.024 gtc:0.008 gtg:0.010 gtt:0.039 taa:0.000 tac:0.012 tag:0.000 tat:0.019 tca:0.003 tcc:0.002 tcg:0.001 tct:0.001 tga:0.000 tgc:0.001 tgg:0.010 tgt:0.001 tta:0.019 ttc:0.012 ttg:0.009 ttt:0.020 CodonUsageIt9 sphere 0.047817048 0.011226611 0.06486487 0.011642411 0.016632017 0.0033264034 0.004989605 0.0054054055 0.037837837 0.00956341 0.01995842 0.007900208 0.04033264 0.008316008 0.017879417 0.035758834 0.012889813 0.011226611 0.0058212057 0.0037422038 0.023284823 0.0037422038 4.1580043E-4 0.004573805 0.0 0.0 0.0 4.1580043E-4 0.016632017 0.011642411 0.004989605 0.027442828 0.08607069 0.017047817 0.07193347 0.02993763 0.04116424 0.013721414 4.1580043E-4 0.024948025 0.04116424 0.0012474012 0.004573805 0.006652807 0.023700623 0.008316008 0.00997921 0.038669437 0.0 0.012058212 0.0 0.01912682 0.0029106028 0.0016632017 8.3160086E-4 0.0012474012 0.0 8.3160086E-4 0.00997921 8.3160086E-4 0.01912682 0.012474013 0.00914761 0.01995842 0.2 0 255 0 Iteration 10 First 20 genes (1%) aaa:0.048 aac:0.011 aag:0.065 aat:0.012 aca:0.017 acc:0.003 acg:0.005 act:0.005 aga:0.038 agc:0.010 agg:0.020 agt:0.008 ata:0.040 atc:0.008 atg:0.018 att:0.036 caa:0.013 cac:0.011 cag:0.006 cat:0.004 cca:0.023 ccc:0.004 ccg:0.000 cct:0.005 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.017 ctc:0.012 ctg:0.005 ctt:0.027 gaa:0.086 gac:0.017 gag:0.072 gat:0.030 gca:0.041 gcc:0.014 gcg:0.000 gct:0.025 gga:0.041 ggc:0.001 ggg:0.005 ggt:0.007 gta:0.024 gtc:0.008 gtg:0.010 gtt:0.039 taa:0.000 tac:0.012 tag:0.000 tat:0.019 tca:0.003 tcc:0.002 tcg:0.001 tct:0.001 tga:0.000 tgc:0.001 tgg:0.010 tgt:0.001 tta:0.019 ttc:0.012 ttg:0.009 ttt:0.020 CodonUsageIt10 sphere 0.047817048 0.011226611 0.06486487 0.011642411 0.016632017 0.0033264034 0.004989605 0.0054054055 0.037837837 0.00956341 0.01995842 0.007900208 0.04033264 0.008316008 0.017879417 0.035758834 0.012889813 0.011226611 0.0058212057 0.0037422038 0.023284823 0.0037422038 4.1580043E-4 0.004573805 0.0 0.0 0.0 4.1580043E-4 0.016632017 0.011642411 0.004989605 0.027442828 0.08607069 0.017047817 0.07193347 0.02993763 0.04116424 0.013721414 4.1580043E-4 0.024948025 0.04116424 0.0012474012 0.004573805 0.006652807 0.023700623 0.008316008 0.00997921 0.038669437 0.0 0.012058212 0.0 0.01912682 0.0029106028 0.0016632017 8.3160086E-4 0.0012474012 0.0 8.3160086E-4 0.00997921 8.3160086E-4 0.01912682 0.012474013 0.00914761 0.01995842 0.2 0 255 0 Iteration 11 First 20 genes (1%) aaa:0.048 aac:0.011 aag:0.065 aat:0.012 aca:0.017 acc:0.003 acg:0.005 act:0.005 aga:0.038 agc:0.010 agg:0.020 agt:0.008 ata:0.040 atc:0.008 atg:0.018 att:0.036 caa:0.013 cac:0.011 cag:0.006 cat:0.004 cca:0.023 ccc:0.004 ccg:0.000 cct:0.005 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.017 ctc:0.012 ctg:0.005 ctt:0.027 gaa:0.086 gac:0.017 gag:0.072 gat:0.030 gca:0.041 gcc:0.014 gcg:0.000 gct:0.025 gga:0.041 ggc:0.001 ggg:0.005 ggt:0.007 gta:0.024 gtc:0.008 gtg:0.010 gtt:0.039 taa:0.000 tac:0.012 tag:0.000 tat:0.019 tca:0.003 tcc:0.002 tcg:0.001 tct:0.001 tga:0.000 tgc:0.001 tgg:0.010 tgt:0.001 tta:0.019 ttc:0.012 ttg:0.009 ttt:0.020 CodonUsageIt11 sphere 0.047817048 0.011226611 0.06486487 0.011642411 0.016632017 0.0033264034 0.004989605 0.0054054055 0.037837837 0.00956341 0.01995842 0.007900208 0.04033264 0.008316008 0.017879417 0.035758834 0.012889813 0.011226611 0.0058212057 0.0037422038 0.023284823 0.0037422038 4.1580043E-4 0.004573805 0.0 0.0 0.0 4.1580043E-4 0.016632017 0.011642411 0.004989605 0.027442828 0.08607069 0.017047817 0.07193347 0.02993763 0.04116424 0.013721414 4.1580043E-4 0.024948025 0.04116424 0.0012474012 0.004573805 0.006652807 0.023700623 0.008316008 0.00997921 0.038669437 0.0 0.012058212 0.0 0.01912682 0.0029106028 0.0016632017 8.3160086E-4 0.0012474012 0.0 8.3160086E-4 0.00997921 8.3160086E-4 0.01912682 0.012474013 0.00914761 0.01995842 0.2 0 255 0 Iteration 12 First 20 genes (1%) aaa:0.048 aac:0.011 aag:0.065 aat:0.012 aca:0.017 acc:0.003 acg:0.005 act:0.005 aga:0.038 agc:0.010 agg:0.020 agt:0.008 ata:0.040 atc:0.008 atg:0.018 att:0.036 caa:0.013 cac:0.011 cag:0.006 cat:0.004 cca:0.023 ccc:0.004 ccg:0.000 cct:0.005 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.017 ctc:0.012 ctg:0.005 ctt:0.027 gaa:0.086 gac:0.017 gag:0.072 gat:0.030 gca:0.041 gcc:0.014 gcg:0.000 gct:0.025 gga:0.041 ggc:0.001 ggg:0.005 ggt:0.007 gta:0.024 gtc:0.008 gtg:0.010 gtt:0.039 taa:0.000 tac:0.012 tag:0.000 tat:0.019 tca:0.003 tcc:0.002 tcg:0.001 tct:0.001 tga:0.000 tgc:0.001 tgg:0.010 tgt:0.001 tta:0.019 ttc:0.012 ttg:0.009 ttt:0.020 CodonUsageIt12 sphere 0.047817048 0.011226611 0.06486487 0.011642411 0.016632017 0.0033264034 0.004989605 0.0054054055 0.037837837 0.00956341 0.01995842 0.007900208 0.04033264 0.008316008 0.017879417 0.035758834 0.012889813 0.011226611 0.0058212057 0.0037422038 0.023284823 0.0037422038 4.1580043E-4 0.004573805 0.0 0.0 0.0 4.1580043E-4 0.016632017 0.011642411 0.004989605 0.027442828 0.08607069 0.017047817 0.07193347 0.02993763 0.04116424 0.013721414 4.1580043E-4 0.024948025 0.04116424 0.0012474012 0.004573805 0.006652807 0.023700623 0.008316008 0.00997921 0.038669437 0.0 0.012058212 0.0 0.01912682 0.0029106028 0.0016632017 8.3160086E-4 0.0012474012 0.0 8.3160086E-4 0.00997921 8.3160086E-4 0.01912682 0.012474013 0.00914761 0.01995842 0.2 0 255 0 Iteration 13 First 20 genes (1%) aaa:0.048 aac:0.011 aag:0.065 aat:0.012 aca:0.017 acc:0.003 acg:0.005 act:0.005 aga:0.038 agc:0.010 agg:0.020 agt:0.008 ata:0.040 atc:0.008 atg:0.018 att:0.036 caa:0.013 cac:0.011 cag:0.006 cat:0.004 cca:0.023 ccc:0.004 ccg:0.000 cct:0.005 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.017 ctc:0.012 ctg:0.005 ctt:0.027 gaa:0.086 gac:0.017 gag:0.072 gat:0.030 gca:0.041 gcc:0.014 gcg:0.000 gct:0.025 gga:0.041 ggc:0.001 ggg:0.005 ggt:0.007 gta:0.024 gtc:0.008 gtg:0.010 gtt:0.039 taa:0.000 tac:0.012 tag:0.000 tat:0.019 tca:0.003 tcc:0.002 tcg:0.001 tct:0.001 tga:0.000 tgc:0.001 tgg:0.010 tgt:0.001 tta:0.019 ttc:0.012 ttg:0.009 ttt:0.020 CodonUsageIt13 sphere 0.047817048 0.011226611 0.06486487 0.011642411 0.016632017 0.0033264034 0.004989605 0.0054054055 0.037837837 0.00956341 0.01995842 0.007900208 0.04033264 0.008316008 0.017879417 0.035758834 0.012889813 0.011226611 0.0058212057 0.0037422038 0.023284823 0.0037422038 4.1580043E-4 0.004573805 0.0 0.0 0.0 4.1580043E-4 0.016632017 0.011642411 0.004989605 0.027442828 0.08607069 0.017047817 0.07193347 0.02993763 0.04116424 0.013721414 4.1580043E-4 0.024948025 0.04116424 0.0012474012 0.004573805 0.006652807 0.023700623 0.008316008 0.00997921 0.038669437 0.0 0.012058212 0.0 0.01912682 0.0029106028 0.0016632017 8.3160086E-4 0.0012474012 0.0 8.3160086E-4 0.00997921 8.3160086E-4 0.01912682 0.012474013 0.00914761 0.01995842 0.2 0 255 0 Iteration 14 First 20 genes (1%) aaa:0.048 aac:0.011 aag:0.065 aat:0.012 aca:0.017 acc:0.003 acg:0.005 act:0.005 aga:0.038 agc:0.010 agg:0.020 agt:0.008 ata:0.040 atc:0.008 atg:0.018 att:0.036 caa:0.013 cac:0.011 cag:0.006 cat:0.004 cca:0.023 ccc:0.004 ccg:0.000 cct:0.005 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.000 cta:0.017 ctc:0.012 ctg:0.005 ctt:0.027 gaa:0.086 gac:0.017 gag:0.072 gat:0.030 gca:0.041 gcc:0.014 gcg:0.000 gct:0.025 gga:0.041 ggc:0.001 ggg:0.005 ggt:0.007 gta:0.024 gtc:0.008 gtg:0.010 gtt:0.039 taa:0.000 tac:0.012 tag:0.000 tat:0.019 tca:0.003 tcc:0.002 tcg:0.001 tct:0.001 tga:0.000 tgc:0.001 tgg:0.010 tgt:0.001 tta:0.019 ttc:0.012 ttg:0.009 ttt:0.020 CodonUsageIt14 sphere 0.047817048 0.011226611 0.06486487 0.011642411 0.016632017 0.0033264034 0.004989605 0.0054054055 0.037837837 0.00956341 0.01995842 0.007900208 0.04033264 0.008316008 0.017879417 0.035758834 0.012889813 0.011226611 0.0058212057 0.0037422038 0.023284823 0.0037422038 4.1580043E-4 0.004573805 0.0 0.0 0.0 4.1580043E-4 0.016632017 0.011642411 0.004989605 0.027442828 0.08607069 0.017047817 0.07193347 0.02993763 0.04116424 0.013721414 4.1580043E-4 0.024948025 0.04116424 0.0012474012 0.004573805 0.006652807 0.023700623 0.008316008 0.00997921 0.038669437 0.0 0.012058212 0.0 0.01912682 0.0029106028 0.0016632017 8.3160086E-4 0.0012474012 0.0 8.3160086E-4 0.00997921 8.3160086E-4 0.01912682 0.012474013 0.00914761 0.01995842 0.2 0 255 0 aaa:0.737 aac:0.964 aag:1.000 aat:1.000 aca:1.000 acc:0.200 acg:0.300 act:0.325 aga:1.000 agc:1.000 agg:0.527 agt:0.826 ata:1.000 atc:0.206 atg:1.000 att:0.887 caa:1.000 cac:1.000 cag:0.452 cat:0.333 cca:1.000 ccc:0.161 ccg:0.018 cct:0.196 cga:0.000 cgc:0.000 cgg:0.000 cgt:0.011 cta:0.606 ctc:0.424 ctg:0.182 ctt:1.000 gaa:1.000 gac:0.569 gag:0.836 gat:1.000 gca:1.000 gcc:0.333 gcg:0.010 gct:0.606 gga:1.000 ggc:0.030 ggg:0.111 ggt:0.162 gta:0.613 gtc:0.215 gtg:0.258 gtt:1.000 taa:0.000 tac:0.630 tag:0.000 tat:1.000 tca:0.304 tcc:0.174 tcg:0.087 tct:0.130 tga:0.000 tgc:1.000 tgg:1.000 tgt:1.000 tta:0.697 ttc:0.625 ttg:0.333 ttt:1.000 ttt:1.000 ttc:0.625 ttg:0.333 tta:0.697 tct:0.130 tcc:0.174 tcg:0.087 tca:0.304 tgt:1.000 tgc:1.000 tgg:1.000 tga:0.000 tat:1.000 tac:0.630 tag:0.000 taa:0.000 ctt:1.000 ctc:0.424 ctg:0.182 cta:0.606 cct:0.196 ccc:0.161 ccg:0.018 cca:1.000 cgt:0.011 cgc:0.000 cgg:0.000 cga:0.000 cat:0.333 cac:1.000 cag:0.452 caa:1.000 gtt:1.000 gtc:0.215 gtg:0.258 gta:0.613 gct:0.606 gcc:0.333 gcg:0.010 gca:1.000 ggt:0.162 ggc:0.030 ggg:0.111 gga:1.000 gat:1.000 gac:0.569 gag:0.836 gaa:1.000 att:0.887 atc:0.206 atg:1.000 ata:1.000 act:0.325 acc:0.200 acg:0.300 aca:1.000 agt:0.826 agc:1.000 agg:0.527 aga:1.000 aat:1.000 aac:0.964 aag:1.000 aaa:0.737 // 0 - CAICLASS // 1 - STRAND // 2 - GC_CONT // 3 - GC_CONT3 // 4 - GC_SKEW // 5 - AT_SKEW // 6 - GENELENGTH // 7 - CAIEXT --- -0.12416325 -0.45037964 -0.4711529 0.3689498 0.515453 0.030054213 NaN