AdditionalInfoFile = "" ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 Looking for randomclass.txt... Loading sequence... Loaded... Getting seq... Got NC_002758 2714 CDS features found Getting seq... Got NC_002774 34 CDS features found CodonUsage sphere 0.061685424 0.013645988 0.014385286 0.043551553 0.02882515 0.0028244627 0.00951287 0.016940575 0.011749368 0.005261911 0.0015269713 0.017031126 0.01877021 0.014874016 0.02310676 0.052548405 0.036631186 0.004584635 0.0051428294 0.018612677 0.016228568 0.0010469243 0.0039755832 0.010828968 0.0049443603 0.003249931 4.8376832E-4 0.01345 0.008684262 0.002149668 0.0024262844 0.010830209 0.05477126 0.012723107 0.010677636 0.04572231 0.02988696 0.0045623076 0.00936774 0.020186784 0.014243877 0.009222609 0.00433903 0.032376505 0.022738352 0.007462437 0.00954264 0.027383769 0.0 0.008656972 0.0 0.030869382 0.020572558 0.001761413 0.003923485 0.013065467 0.0 0.0013024532 0.007505852 0.0050969333 0.053926524 0.012068159 0.013655912 0.03287764 0.4 255 0 0 aaa:0.062 aac:0.014 aag:0.014 aat:0.044 aca:0.029 acc:0.003 acg:0.010 act:0.017 aga:0.012 agc:0.005 agg:0.002 agt:0.017 ata:0.019 atc:0.015 atg:0.023 att:0.053 caa:0.037 cac:0.005 cag:0.005 cat:0.019 cca:0.016 ccc:0.001 ccg:0.004 cct:0.011 cga:0.005 cgc:0.003 cgg:0.000 cgt:0.013 cta:0.009 ctc:0.002 ctg:0.002 ctt:0.011 gaa:0.055 gac:0.013 gag:0.011 gat:0.046 gca:0.030 gcc:0.005 gcg:0.009 gct:0.020 gga:0.014 ggc:0.009 ggg:0.004 ggt:0.032 gta:0.023 gtc:0.007 gtg:0.010 gtt:0.027 taa:0.000 tac:0.009 tag:0.000 tat:0.031 tca:0.021 tcc:0.002 tcg:0.004 tct:0.013 tga:0.000 tgc:0.001 tgg:0.008 tgt:0.005 tta:0.054 ttc:0.012 ttg:0.014 ttt:0.033 Number of points = 2748 Iteration 0 First 1374 genes (50%) aaa:0.066 aac:0.014 aag:0.012 aat:0.045 aca:0.030 acc:0.002 acg:0.009 act:0.018 aga:0.012 agc:0.005 agg:0.001 agt:0.016 ata:0.014 atc:0.013 atg:0.022 att:0.051 caa:0.039 cac:0.004 cag:0.004 cat:0.018 cca:0.018 ccc:0.001 ccg:0.004 cct:0.011 cga:0.004 cgc:0.003 cgg:0.000 cgt:0.016 cta:0.007 ctc:0.001 ctg:0.001 ctt:0.009 gaa:0.063 gac:0.013 gag:0.010 gat:0.051 gca:0.033 gcc:0.004 gcg:0.009 gct:0.022 gga:0.014 ggc:0.009 ggg:0.004 ggt:0.037 gta:0.025 gtc:0.006 gtg:0.009 gtt:0.030 taa:0.000 tac:0.008 tag:0.000 tat:0.030 tca:0.021 tcc:0.001 tcg:0.003 tct:0.013 tga:0.000 tgc:0.001 tgg:0.007 tgt:0.005 tta:0.054 ttc:0.011 ttg:0.011 ttt:0.029 CodonUsageIt0 sphere 0.06622932 0.013623237 0.012467591 0.04461114 0.03027514 0.0017046346 0.008511639 0.017796015 0.011614121 0.004634115 8.972975E-4 0.015646193 0.014063812 0.013475609 0.022349397 0.05051162 0.038879048 0.0043573137 0.003916738 0.018421125 0.017962096 5.489892E-4 0.0035984167 0.011275039 0.0040874323 0.0029686939 1.7761416E-4 0.015576992 0.0065601906 9.180576E-4 0.00144398 0.009088309 0.062845424 0.013341822 0.010239341 0.05051162 0.033333793 0.0037760308 0.009459684 0.022210997 0.014144545 0.008686947 0.00360303 0.036929905 0.024607634 0.0059604542 0.00871924 0.030049086 0.0 0.008064144 0.0 0.029652338 0.02104151 0.001079525 0.002959467 0.012792833 0.0 0.0010103247 0.0068139248 0.0047171554 0.0542692 0.011074358 0.010765263 0.029149482 0.2 0 255 0 Iteration 1 First 687 genes (25%) aaa:0.070 aac:0.015 aag:0.011 aat:0.045 aca:0.032 acc:0.001 acg:0.008 act:0.020 aga:0.011 agc:0.005 agg:0.000 agt:0.014 ata:0.009 atc:0.014 atg:0.021 att:0.049 caa:0.041 cac:0.004 cag:0.003 cat:0.016 cca:0.019 ccc:0.000 ccg:0.003 cct:0.011 cga:0.003 cgc:0.003 cgg:0.000 cgt:0.018 cta:0.005 ctc:0.000 ctg:0.001 ctt:0.008 gaa:0.068 gac:0.015 gag:0.009 gat:0.052 gca:0.036 gcc:0.003 gcg:0.010 gct:0.025 gga:0.014 ggc:0.009 ggg:0.003 ggt:0.041 gta:0.026 gtc:0.005 gtg:0.008 gtt:0.032 taa:0.000 tac:0.008 tag:0.000 tat:0.027 tca:0.022 tcc:0.001 tcg:0.002 tct:0.013 tga:0.000 tgc:0.001 tgg:0.006 tgt:0.004 tta:0.054 ttc:0.012 ttg:0.008 ttt:0.025 CodonUsageIt1 sphere 0.06956704 0.015171164 0.010657928 0.04450487 0.032071393 0.0010225662 0.0077110785 0.020014409 0.011090195 0.004671268 3.811383E-4 0.014399591 0.009337888 0.013944084 0.021353042 0.04852541 0.040693484 0.0044156266 0.0026726162 0.016458668 0.018889586 2.138093E-4 0.0026912082 0.011359781 0.003132771 0.0027748728 4.1832252E-5 0.018387599 0.0053452323 4.276186E-4 8.1805297E-4 0.00818053 0.06795417 0.015022427 0.009477329 0.052122988 0.03634293 0.0034441887 0.009788747 0.025271328 0.013516465 0.008608148 0.0026865602 0.040898 0.026312487 0.005061703 0.007794743 0.032038856 0.0 0.008361802 0.0 0.026688978 0.022347718 5.2522717E-4 0.0020218922 0.013172512 0.0 7.7157264E-4 0.0062097656 0.0040763207 0.053986847 0.011578238 0.008366451 0.024625253 0.2 0 255 0 Iteration 2 First 329 genes (12%) aaa:0.072 aac:0.018 aag:0.009 aat:0.043 aca:0.034 acc:0.001 acg:0.007 act:0.022 aga:0.010 agc:0.005 agg:0.000 agt:0.013 ata:0.006 atc:0.015 atg:0.020 att:0.046 caa:0.043 cac:0.005 cag:0.002 cat:0.014 cca:0.020 ccc:0.000 ccg:0.002 cct:0.011 cga:0.002 cgc:0.003 cgg:0.000 cgt:0.020 cta:0.004 ctc:0.000 ctg:0.000 ctt:0.008 gaa:0.070 gac:0.017 gag:0.009 gat:0.051 gca:0.041 gcc:0.003 gcg:0.010 gct:0.029 gga:0.013 ggc:0.008 ggg:0.002 ggt:0.045 gta:0.028 gtc:0.004 gtg:0.007 gtt:0.035 taa:0.000 tac:0.009 tag:0.000 tat:0.023 tca:0.024 tcc:0.000 tcg:0.002 tct:0.013 tga:0.000 tgc:0.001 tgg:0.006 tgt:0.004 tta:0.054 ttc:0.013 ttg:0.007 ttt:0.021 CodonUsageIt2 sphere 0.071530424 0.018074743 0.008759583 0.043455314 0.034186453 5.0927815E-4 0.0068984036 0.022324901 0.009833697 0.0046020225 1.20374825E-4 0.012602319 0.0056020594 0.015028334 0.020102596 0.04560354 0.042621948 0.004518686 0.0019722953 0.01397274 0.019676656 8.333642E-5 0.0022315641 0.011102263 0.0022500833 0.0025278714 9.259602E-6 0.020408163 0.004490907 1.9445164E-4 4.907589E-4 0.007639172 0.06966925 0.016639505 0.008500315 0.05121486 0.041307084 0.0029723323 0.0101577835 0.029149227 0.012815289 0.008231786 0.0018704396 0.044742398 0.028084373 0.0042501576 0.0068706246 0.035047594 0.0 0.00908367 0.0 0.022778621 0.02351939 3.1482647E-4 0.0015093152 0.013324567 0.0 6.852106E-4 0.0061391164 0.0036945813 0.054363124 0.012509722 0.006611356 0.020519279 0.2 0 255 0 Iteration 3 First 164 genes (6%) aaa:0.075 aac:0.019 aag:0.007 aat:0.035 aca:0.032 acc:0.000 acg:0.005 act:0.023 aga:0.009 agc:0.004 agg:0.000 agt:0.010 ata:0.003 atc:0.019 atg:0.020 att:0.047 caa:0.038 cac:0.005 cag:0.001 cat:0.012 cca:0.020 ccc:0.000 ccg:0.002 cct:0.011 cga:0.001 cgc:0.003 cgg:0.000 cgt:0.024 cta:0.003 ctc:0.000 ctg:0.000 ctt:0.007 gaa:0.077 gac:0.018 gag:0.007 gat:0.047 gca:0.043 gcc:0.002 gcg:0.008 gct:0.033 gga:0.013 ggc:0.008 ggg:0.001 ggt:0.051 gta:0.032 gtc:0.003 gtg:0.005 gtt:0.038 taa:0.000 tac:0.010 tag:0.000 tat:0.019 tca:0.025 tcc:0.000 tcg:0.001 tct:0.014 tga:0.000 tgc:0.001 tgg:0.006 tgt:0.004 tta:0.056 ttc:0.015 ttg:0.005 ttt:0.020 CodonUsageIt3 sphere 0.074546196 0.019099502 0.0068689305 0.03520596 0.032471307 3.2299047E-4 0.004780259 0.02338451 0.008806873 0.0043711374 0.0 0.010228031 0.00327297 0.018668849 0.020326866 0.046596758 0.038199004 0.0053185765 0.0013996253 0.012036778 0.020499129 4.3065396E-5 0.0018087466 0.011433862 0.0011842983 0.0028423162 0.0 0.02387976 0.0034667642 4.3065396E-5 3.2299047E-4 0.0072780517 0.07674253 0.017764475 0.0073641827 0.046962813 0.04312999 0.0023901295 0.0079455655 0.033268016 0.012661226 0.008182425 0.0011412329 0.05060184 0.03219138 0.002993045 0.005253978 0.037811417 0.0 0.010120368 0.0 0.019271765 0.024934864 6.459809E-5 8.182425E-4 0.013587132 0.0 6.0291553E-4 0.0058784266 0.003962016 0.05596348 0.015266682 0.004780259 0.01963782 0.2 0 255 0 Iteration 4 First 82 genes (3%) aaa:0.075 aac:0.024 aag:0.005 aat:0.033 aca:0.033 acc:0.000 acg:0.004 act:0.029 aga:0.007 agc:0.004 agg:0.000 agt:0.009 ata:0.002 atc:0.023 atg:0.019 att:0.041 caa:0.042 cac:0.007 cag:0.001 cat:0.009 cca:0.020 ccc:0.000 ccg:0.001 cct:0.011 cga:0.001 cgc:0.003 cgg:0.000 cgt:0.027 cta:0.002 ctc:0.000 ctg:0.000 ctt:0.007 gaa:0.082 gac:0.020 gag:0.007 gat:0.043 gca:0.047 gcc:0.001 gcg:0.007 gct:0.038 gga:0.011 ggc:0.007 ggg:0.000 ggt:0.054 gta:0.034 gtc:0.002 gtg:0.004 gtt:0.039 taa:0.000 tac:0.011 tag:0.000 tat:0.015 tca:0.027 tcc:0.000 tcg:0.001 tct:0.012 tga:0.000 tgc:0.001 tgg:0.005 tgt:0.003 tta:0.054 ttc:0.018 ttg:0.002 ttt:0.015 CodonUsageIt4 sphere 0.07546337 0.02446798 0.005246641 0.0328528 0.033048935 4.9034028E-5 0.0039717564 0.02932235 0.006619594 0.004462097 0.0 0.008629989 0.0018632931 0.023095028 0.019368442 0.04050211 0.04197313 0.006619594 0.0013239188 0.009463567 0.020300088 9.8068056E-5 0.0011768168 0.011032657 5.393743E-4 0.0025988035 0.0 0.027066784 0.0022555653 4.9034028E-5 4.9034028E-5 0.006668628 0.08173972 0.020251054 0.00681573 0.04334608 0.046582326 0.0014219868 0.0070609003 0.03844268 0.011032657 0.006962832 4.4130627E-4 0.053545162 0.034421887 0.0017161911 0.0035304502 0.038589783 0.0 0.011032657 0.0 0.015053447 0.027066784 0.0 5.884084E-4 0.012160439 0.0 6.374424E-4 0.0052956752 0.0030401098 0.05447681 0.017505148 0.0024026674 0.014661175 0.2 0 255 0 Iteration 5 First 27 genes (1%) aaa:0.079 aac:0.027 aag:0.003 aat:0.023 aca:0.026 acc:0.000 acg:0.001 act:0.037 aga:0.005 agc:0.005 agg:0.000 agt:0.006 ata:0.000 atc:0.032 atg:0.016 att:0.031 caa:0.044 cac:0.009 cag:0.000 cat:0.008 cca:0.021 ccc:0.000 ccg:0.001 cct:0.008 cga:0.000 cgc:0.002 cgg:0.000 cgt:0.030 cta:0.001 ctc:0.000 ctg:0.000 ctt:0.003 gaa:0.088 gac:0.027 gag:0.006 gat:0.033 gca:0.043 gcc:0.000 gcg:0.005 gct:0.044 gga:0.010 ggc:0.006 ggg:0.000 ggt:0.062 gta:0.042 gtc:0.001 gtg:0.002 gtt:0.045 taa:0.000 tac:0.014 tag:0.000 tat:0.010 tca:0.029 tcc:0.000 tcg:0.000 tct:0.011 tga:0.000 tgc:0.001 tgg:0.006 tgt:0.003 tta:0.060 ttc:0.022 ttg:0.000 ttt:0.012 CodonUsageIt5 sphere 0.07929991 0.027009508 0.0030250647 0.022687986 0.026145203 0.0 8.6430425E-4 0.037381157 0.0051858253 0.0054019014 0.0 0.0056179776 4.3215213E-4 0.032411408 0.01642178 0.030898876 0.043647364 0.008859118 4.3215213E-4 0.007562662 0.020959377 0.0 6.4822816E-4 0.00821089 2.1607606E-4 0.0019446845 0.0 0.030034572 8.6430425E-4 0.0 0.0 0.0030250647 0.087726876 0.026577355 0.0058340537 0.033275712 0.04278306 4.3215213E-4 0.0045375973 0.043863438 0.009939498 0.0064822817 2.1607606E-4 0.06244598 0.042134833 6.4822816E-4 0.0021607606 0.044727743 0.0 0.014044944 0.0 0.009939498 0.029170267 0.0 0.0 0.011019879 0.0 6.4822816E-4 0.0056179776 0.0025929126 0.05985307 0.022255834 2.1607606E-4 0.0116681075 0.2 0 255 0 Iteration 6 First 27 genes (1%) aaa:0.078 aac:0.027 aag:0.003 aat:0.022 aca:0.026 acc:0.000 acg:0.001 act:0.036 aga:0.004 agc:0.006 agg:0.000 agt:0.005 ata:0.001 atc:0.034 atg:0.017 att:0.030 caa:0.043 cac:0.008 cag:0.000 cat:0.008 cca:0.021 ccc:0.000 ccg:0.001 cct:0.008 cga:0.000 cgc:0.002 cgg:0.000 cgt:0.028 cta:0.001 ctc:0.000 ctg:0.000 ctt:0.004 gaa:0.090 gac:0.026 gag:0.006 gat:0.035 gca:0.043 gcc:0.000 gcg:0.004 gct:0.045 gga:0.011 ggc:0.007 ggg:0.000 ggt:0.064 gta:0.040 gtc:0.001 gtg:0.002 gtt:0.047 taa:0.000 tac:0.014 tag:0.000 tat:0.010 tca:0.028 tcc:0.000 tcg:0.000 tct:0.010 tga:0.000 tgc:0.001 tgg:0.005 tgt:0.002 tta:0.061 ttc:0.022 ttg:0.000 ttt:0.011 CodonUsageIt6 sphere 0.07818765 0.027064957 0.0028067362 0.021852447 0.02606255 2.0048115E-4 0.0010024058 0.035886128 0.0044105854 0.0058139535 0.0 0.005412991 6.0144346E-4 0.033680834 0.016840417 0.030272655 0.042502005 0.0084202085 4.009623E-4 0.007618284 0.02064956 0.0 6.0144346E-4 0.008219727 2.0048115E-4 0.0018043304 0.0 0.027866881 0.0012028869 0.0 0.0 0.0044105854 0.08961508 0.02606255 0.0058139535 0.035084203 0.04290297 4.009623E-4 0.0042101042 0.045308743 0.0110264635 0.0070168404 2.0048115E-4 0.06375301 0.040497195 6.0144346E-4 0.0018043304 0.046912592 0.0 0.014033681 0.0 0.01042502 0.028067362 0.0 0.0 0.01042502 0.0 0.0010024058 0.0048115477 0.0022052927 0.06054531 0.022052927 2.0048115E-4 0.0110264635 0.2 0 255 0 Iteration 7 First 27 genes (1%) aaa:0.078 aac:0.027 aag:0.002 aat:0.022 aca:0.025 acc:0.000 acg:0.001 act:0.035 aga:0.005 agc:0.006 agg:0.000 agt:0.005 ata:0.001 atc:0.034 atg:0.017 att:0.029 caa:0.042 cac:0.008 cag:0.000 cat:0.008 cca:0.021 ccc:0.000 ccg:0.001 cct:0.008 cga:0.000 cgc:0.002 cgg:0.000 cgt:0.028 cta:0.001 ctc:0.000 ctg:0.000 ctt:0.004 gaa:0.090 gac:0.027 gag:0.006 gat:0.035 gca:0.042 gcc:0.000 gcg:0.004 gct:0.046 gga:0.011 ggc:0.008 ggg:0.000 ggt:0.064 gta:0.040 gtc:0.001 gtg:0.002 gtt:0.047 taa:0.000 tac:0.014 tag:0.000 tat:0.010 tca:0.028 tcc:0.000 tcg:0.000 tct:0.010 tga:0.000 tgc:0.001 tgg:0.005 tgt:0.002 tta:0.060 ttc:0.023 ttg:0.000 ttt:0.011 CodonUsageIt7 sphere 0.077992745 0.027408304 0.0024183798 0.021563886 0.025191454 2.0153164E-4 8.0612657E-4 0.03546957 0.004635228 0.006045949 0.0 0.005441354 6.0459494E-4 0.033857316 0.016727125 0.029020555 0.042120114 0.008464329 4.0306328E-4 0.007658202 0.020556228 0.0 6.0459494E-4 0.008061266 2.0153164E-4 0.0018137847 0.0 0.028012898 0.0012091899 0.0 0.0 0.004433696 0.09028617 0.026602177 0.005642886 0.03526804 0.042321645 4.0306328E-4 0.004030633 0.045949213 0.01108424 0.007658202 2.0153164E-4 0.06408706 0.04030633 6.0459494E-4 0.0018137847 0.047359936 0.0 0.014308747 0.0 0.010076582 0.028415961 0.0 0.0 0.010479645 0.0 0.0010076582 0.005038291 0.0020153164 0.0598549 0.022571543 2.0153164E-4 0.011487303 0.2 0 255 0 Iteration 8 First 27 genes (1%) aaa:0.077 aac:0.027 aag:0.002 aat:0.021 aca:0.025 acc:0.000 acg:0.001 act:0.036 aga:0.005 agc:0.006 agg:0.000 agt:0.005 ata:0.000 atc:0.034 atg:0.016 att:0.029 caa:0.042 cac:0.008 cag:0.000 cat:0.007 cca:0.020 ccc:0.000 ccg:0.001 cct:0.008 cga:0.000 cgc:0.002 cgg:0.000 cgt:0.030 cta:0.001 ctc:0.000 ctg:0.000 ctt:0.005 gaa:0.091 gac:0.026 gag:0.006 gat:0.035 gca:0.041 gcc:0.000 gcg:0.004 gct:0.045 gga:0.011 ggc:0.008 ggg:0.000 ggt:0.065 gta:0.040 gtc:0.001 gtg:0.002 gtt:0.047 taa:0.000 tac:0.015 tag:0.000 tat:0.010 tca:0.028 tcc:0.000 tcg:0.000 tct:0.011 tga:0.000 tgc:0.001 tgg:0.005 tgt:0.002 tta:0.060 ttc:0.022 ttg:0.000 ttt:0.012 CodonUsageIt8 sphere 0.07698461 0.026594682 0.0019996 0.02059588 0.025194962 1.9996E-4 7.9984E-4 0.03619276 0.00479904 0.0057988404 0.0 0.0053989203 3.9992E-4 0.03439312 0.01639672 0.0289942 0.04219156 0.0083983205 3.9992E-4 0.00739852 0.020395922 0.0 5.9988E-4 0.00819836 1.9996E-4 0.0019996 0.0 0.02959408 0.00119976 0.0 0.0 0.004999 0.09118176 0.026394721 0.0059988 0.03539292 0.041391723 3.9992E-4 0.0039992 0.045390923 0.011197761 0.0077984403 1.9996E-4 0.06518696 0.039792042 5.9988E-4 0.0017996401 0.047190562 0.0 0.01479704 0.0 0.009998 0.027794441 0.0 0.0 0.01059788 0.0 9.998E-4 0.004999 0.0019996 0.06038792 0.022395521 1.9996E-4 0.011597681 0.2 0 255 0 Iteration 9 First 27 genes (1%) aaa:0.077 aac:0.027 aag:0.002 aat:0.021 aca:0.025 acc:0.000 acg:0.001 act:0.036 aga:0.005 agc:0.006 agg:0.000 agt:0.005 ata:0.000 atc:0.034 atg:0.016 att:0.029 caa:0.042 cac:0.008 cag:0.000 cat:0.007 cca:0.020 ccc:0.000 ccg:0.001 cct:0.008 cga:0.000 cgc:0.002 cgg:0.000 cgt:0.030 cta:0.001 ctc:0.000 ctg:0.000 ctt:0.005 gaa:0.091 gac:0.026 gag:0.006 gat:0.035 gca:0.041 gcc:0.000 gcg:0.004 gct:0.045 gga:0.011 ggc:0.008 ggg:0.000 ggt:0.065 gta:0.040 gtc:0.001 gtg:0.002 gtt:0.047 taa:0.000 tac:0.015 tag:0.000 tat:0.010 tca:0.028 tcc:0.000 tcg:0.000 tct:0.011 tga:0.000 tgc:0.001 tgg:0.005 tgt:0.002 tta:0.060 ttc:0.022 ttg:0.000 ttt:0.012 CodonUsageIt9 sphere 0.07698461 0.026594682 0.0019996 0.02059588 0.025194962 1.9996E-4 7.9984E-4 0.03619276 0.00479904 0.0057988404 0.0 0.0053989203 3.9992E-4 0.03439312 0.01639672 0.0289942 0.04219156 0.0083983205 3.9992E-4 0.00739852 0.020395922 0.0 5.9988E-4 0.00819836 1.9996E-4 0.0019996 0.0 0.02959408 0.00119976 0.0 0.0 0.004999 0.09118176 0.026394721 0.0059988 0.03539292 0.041391723 3.9992E-4 0.0039992 0.045390923 0.011197761 0.0077984403 1.9996E-4 0.06518696 0.039792042 5.9988E-4 0.0017996401 0.047190562 0.0 0.01479704 0.0 0.009998 0.027794441 0.0 0.0 0.01059788 0.0 9.998E-4 0.004999 0.0019996 0.06038792 0.022395521 1.9996E-4 0.011597681 0.2 0 255 0 Iteration 10 First 27 genes (1%) aaa:0.077 aac:0.027 aag:0.002 aat:0.021 aca:0.025 acc:0.000 acg:0.001 act:0.036 aga:0.005 agc:0.006 agg:0.000 agt:0.005 ata:0.000 atc:0.034 atg:0.016 att:0.029 caa:0.042 cac:0.008 cag:0.000 cat:0.007 cca:0.020 ccc:0.000 ccg:0.001 cct:0.008 cga:0.000 cgc:0.002 cgg:0.000 cgt:0.030 cta:0.001 ctc:0.000 ctg:0.000 ctt:0.005 gaa:0.091 gac:0.026 gag:0.006 gat:0.035 gca:0.041 gcc:0.000 gcg:0.004 gct:0.045 gga:0.011 ggc:0.008 ggg:0.000 ggt:0.065 gta:0.040 gtc:0.001 gtg:0.002 gtt:0.047 taa:0.000 tac:0.015 tag:0.000 tat:0.010 tca:0.028 tcc:0.000 tcg:0.000 tct:0.011 tga:0.000 tgc:0.001 tgg:0.005 tgt:0.002 tta:0.060 ttc:0.022 ttg:0.000 ttt:0.012 CodonUsageIt10 sphere 0.07698461 0.026594682 0.0019996 0.02059588 0.025194962 1.9996E-4 7.9984E-4 0.03619276 0.00479904 0.0057988404 0.0 0.0053989203 3.9992E-4 0.03439312 0.01639672 0.0289942 0.04219156 0.0083983205 3.9992E-4 0.00739852 0.020395922 0.0 5.9988E-4 0.00819836 1.9996E-4 0.0019996 0.0 0.02959408 0.00119976 0.0 0.0 0.004999 0.09118176 0.026394721 0.0059988 0.03539292 0.041391723 3.9992E-4 0.0039992 0.045390923 0.011197761 0.0077984403 1.9996E-4 0.06518696 0.039792042 5.9988E-4 0.0017996401 0.047190562 0.0 0.01479704 0.0 0.009998 0.027794441 0.0 0.0 0.01059788 0.0 9.998E-4 0.004999 0.0019996 0.06038792 0.022395521 1.9996E-4 0.011597681 0.2 0 255 0 Iteration 11 First 27 genes (1%) aaa:0.077 aac:0.027 aag:0.002 aat:0.021 aca:0.025 acc:0.000 acg:0.001 act:0.036 aga:0.005 agc:0.006 agg:0.000 agt:0.005 ata:0.000 atc:0.034 atg:0.016 att:0.029 caa:0.042 cac:0.008 cag:0.000 cat:0.007 cca:0.020 ccc:0.000 ccg:0.001 cct:0.008 cga:0.000 cgc:0.002 cgg:0.000 cgt:0.030 cta:0.001 ctc:0.000 ctg:0.000 ctt:0.005 gaa:0.091 gac:0.026 gag:0.006 gat:0.035 gca:0.041 gcc:0.000 gcg:0.004 gct:0.045 gga:0.011 ggc:0.008 ggg:0.000 ggt:0.065 gta:0.040 gtc:0.001 gtg:0.002 gtt:0.047 taa:0.000 tac:0.015 tag:0.000 tat:0.010 tca:0.028 tcc:0.000 tcg:0.000 tct:0.011 tga:0.000 tgc:0.001 tgg:0.005 tgt:0.002 tta:0.060 ttc:0.022 ttg:0.000 ttt:0.012 CodonUsageIt11 sphere 0.07698461 0.026594682 0.0019996 0.02059588 0.025194962 1.9996E-4 7.9984E-4 0.03619276 0.00479904 0.0057988404 0.0 0.0053989203 3.9992E-4 0.03439312 0.01639672 0.0289942 0.04219156 0.0083983205 3.9992E-4 0.00739852 0.020395922 0.0 5.9988E-4 0.00819836 1.9996E-4 0.0019996 0.0 0.02959408 0.00119976 0.0 0.0 0.004999 0.09118176 0.026394721 0.0059988 0.03539292 0.041391723 3.9992E-4 0.0039992 0.045390923 0.011197761 0.0077984403 1.9996E-4 0.06518696 0.039792042 5.9988E-4 0.0017996401 0.047190562 0.0 0.01479704 0.0 0.009998 0.027794441 0.0 0.0 0.01059788 0.0 9.998E-4 0.004999 0.0019996 0.06038792 0.022395521 1.9996E-4 0.011597681 0.2 0 255 0 Iteration 12 First 27 genes (1%) aaa:0.077 aac:0.027 aag:0.002 aat:0.021 aca:0.025 acc:0.000 acg:0.001 act:0.036 aga:0.005 agc:0.006 agg:0.000 agt:0.005 ata:0.000 atc:0.034 atg:0.016 att:0.029 caa:0.042 cac:0.008 cag:0.000 cat:0.007 cca:0.020 ccc:0.000 ccg:0.001 cct:0.008 cga:0.000 cgc:0.002 cgg:0.000 cgt:0.030 cta:0.001 ctc:0.000 ctg:0.000 ctt:0.005 gaa:0.091 gac:0.026 gag:0.006 gat:0.035 gca:0.041 gcc:0.000 gcg:0.004 gct:0.045 gga:0.011 ggc:0.008 ggg:0.000 ggt:0.065 gta:0.040 gtc:0.001 gtg:0.002 gtt:0.047 taa:0.000 tac:0.015 tag:0.000 tat:0.010 tca:0.028 tcc:0.000 tcg:0.000 tct:0.011 tga:0.000 tgc:0.001 tgg:0.005 tgt:0.002 tta:0.060 ttc:0.022 ttg:0.000 ttt:0.012 CodonUsageIt12 sphere 0.07698461 0.026594682 0.0019996 0.02059588 0.025194962 1.9996E-4 7.9984E-4 0.03619276 0.00479904 0.0057988404 0.0 0.0053989203 3.9992E-4 0.03439312 0.01639672 0.0289942 0.04219156 0.0083983205 3.9992E-4 0.00739852 0.020395922 0.0 5.9988E-4 0.00819836 1.9996E-4 0.0019996 0.0 0.02959408 0.00119976 0.0 0.0 0.004999 0.09118176 0.026394721 0.0059988 0.03539292 0.041391723 3.9992E-4 0.0039992 0.045390923 0.011197761 0.0077984403 1.9996E-4 0.06518696 0.039792042 5.9988E-4 0.0017996401 0.047190562 0.0 0.01479704 0.0 0.009998 0.027794441 0.0 0.0 0.01059788 0.0 9.998E-4 0.004999 0.0019996 0.06038792 0.022395521 1.9996E-4 0.011597681 0.2 0 255 0 Iteration 13 First 27 genes (1%) aaa:0.077 aac:0.027 aag:0.002 aat:0.021 aca:0.025 acc:0.000 acg:0.001 act:0.036 aga:0.005 agc:0.006 agg:0.000 agt:0.005 ata:0.000 atc:0.034 atg:0.016 att:0.029 caa:0.042 cac:0.008 cag:0.000 cat:0.007 cca:0.020 ccc:0.000 ccg:0.001 cct:0.008 cga:0.000 cgc:0.002 cgg:0.000 cgt:0.030 cta:0.001 ctc:0.000 ctg:0.000 ctt:0.005 gaa:0.091 gac:0.026 gag:0.006 gat:0.035 gca:0.041 gcc:0.000 gcg:0.004 gct:0.045 gga:0.011 ggc:0.008 ggg:0.000 ggt:0.065 gta:0.040 gtc:0.001 gtg:0.002 gtt:0.047 taa:0.000 tac:0.015 tag:0.000 tat:0.010 tca:0.028 tcc:0.000 tcg:0.000 tct:0.011 tga:0.000 tgc:0.001 tgg:0.005 tgt:0.002 tta:0.060 ttc:0.022 ttg:0.000 ttt:0.012 CodonUsageIt13 sphere 0.07698461 0.026594682 0.0019996 0.02059588 0.025194962 1.9996E-4 7.9984E-4 0.03619276 0.00479904 0.0057988404 0.0 0.0053989203 3.9992E-4 0.03439312 0.01639672 0.0289942 0.04219156 0.0083983205 3.9992E-4 0.00739852 0.020395922 0.0 5.9988E-4 0.00819836 1.9996E-4 0.0019996 0.0 0.02959408 0.00119976 0.0 0.0 0.004999 0.09118176 0.026394721 0.0059988 0.03539292 0.041391723 3.9992E-4 0.0039992 0.045390923 0.011197761 0.0077984403 1.9996E-4 0.06518696 0.039792042 5.9988E-4 0.0017996401 0.047190562 0.0 0.01479704 0.0 0.009998 0.027794441 0.0 0.0 0.01059788 0.0 9.998E-4 0.004999 0.0019996 0.06038792 0.022395521 1.9996E-4 0.011597681 0.2 0 255 0 Iteration 14 First 27 genes (1%) aaa:0.077 aac:0.027 aag:0.002 aat:0.021 aca:0.025 acc:0.000 acg:0.001 act:0.036 aga:0.005 agc:0.006 agg:0.000 agt:0.005 ata:0.000 atc:0.034 atg:0.016 att:0.029 caa:0.042 cac:0.008 cag:0.000 cat:0.007 cca:0.020 ccc:0.000 ccg:0.001 cct:0.008 cga:0.000 cgc:0.002 cgg:0.000 cgt:0.030 cta:0.001 ctc:0.000 ctg:0.000 ctt:0.005 gaa:0.091 gac:0.026 gag:0.006 gat:0.035 gca:0.041 gcc:0.000 gcg:0.004 gct:0.045 gga:0.011 ggc:0.008 ggg:0.000 ggt:0.065 gta:0.040 gtc:0.001 gtg:0.002 gtt:0.047 taa:0.000 tac:0.015 tag:0.000 tat:0.010 tca:0.028 tcc:0.000 tcg:0.000 tct:0.011 tga:0.000 tgc:0.001 tgg:0.005 tgt:0.002 tta:0.060 ttc:0.022 ttg:0.000 ttt:0.012 CodonUsageIt14 sphere 0.07698461 0.026594682 0.0019996 0.02059588 0.025194962 1.9996E-4 7.9984E-4 0.03619276 0.00479904 0.0057988404 0.0 0.0053989203 3.9992E-4 0.03439312 0.01639672 0.0289942 0.04219156 0.0083983205 3.9992E-4 0.00739852 0.020395922 0.0 5.9988E-4 0.00819836 1.9996E-4 0.0019996 0.0 0.02959408 0.00119976 0.0 0.0 0.004999 0.09118176 0.026394721 0.0059988 0.03539292 0.041391723 3.9992E-4 0.0039992 0.045390923 0.011197761 0.0077984403 1.9996E-4 0.06518696 0.039792042 5.9988E-4 0.0017996401 0.047190562 0.0 0.01479704 0.0 0.009998 0.027794441 0.0 0.0 0.01059788 0.0 9.998E-4 0.004999 0.0019996 0.06038792 0.022395521 1.9996E-4 0.011597681 0.2 0 255 0 aaa:1.000 aac:1.000 aag:0.026 aat:0.774 aca:0.696 acc:0.006 acg:0.022 act:1.000 aga:0.162 agc:0.209 agg:0.000 agt:0.194 ata:0.012 atc:1.000 atg:1.000 att:0.843 caa:1.000 cac:1.000 cag:0.009 cat:0.881 cca:1.000 ccc:0.000 ccg:0.029 cct:0.402 cga:0.007 cgc:0.068 cgg:0.000 cgt:1.000 cta:0.020 ctc:0.000 ctg:0.000 ctt:0.083 gaa:1.000 gac:0.746 gag:0.066 gat:1.000 gca:0.912 gcc:0.009 gcg:0.088 gct:1.000 gga:0.172 ggc:0.120 ggg:0.003 ggt:1.000 gta:0.843 gtc:0.013 gtg:0.038 gtt:1.000 taa:0.000 tac:1.000 tag:0.000 tat:0.676 tca:1.000 tcc:0.000 tcg:0.000 tct:0.381 tga:0.000 tgc:0.500 tgg:1.000 tgt:1.000 tta:1.000 ttc:1.000 ttg:0.003 ttt:0.518 ttt:0.518 ttc:1.000 ttg:0.003 tta:1.000 tct:0.381 tcc:0.000 tcg:0.000 tca:1.000 tgt:1.000 tgc:0.500 tgg:1.000 tga:0.000 tat:0.676 tac:1.000 tag:0.000 taa:0.000 ctt:0.083 ctc:0.000 ctg:0.000 cta:0.020 cct:0.402 ccc:0.000 ccg:0.029 cca:1.000 cgt:1.000 cgc:0.068 cgg:0.000 cga:0.007 cat:0.881 cac:1.000 cag:0.009 caa:1.000 gtt:1.000 gtc:0.013 gtg:0.038 gta:0.843 gct:1.000 gcc:0.009 gcg:0.088 gca:0.912 ggt:1.000 ggc:0.120 ggg:0.003 gga:0.172 gat:1.000 gac:0.746 gag:0.066 gaa:1.000 att:0.843 atc:1.000 atg:1.000 ata:0.012 act:1.000 acc:0.006 acg:0.022 aca:0.696 agt:0.194 agc:0.209 agg:0.000 aga:0.162 aat:0.774 aac:1.000 aag:0.026 aaa:1.000 // 0 - CAICLASS // 1 - STRAND // 2 - GC_CONT // 3 - GC_CONT3 // 4 - GC_SKEW // 5 - AT_SKEW // 6 - GENELENGTH // 7 - CAIEXT --- -0.041392084 0.12123489 -0.53475785 0.023330268 0.28671357 0.08511518 NaN