AdditionalInfoFile = "" ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 Looking for randomclass.txt... Loading sequence... Loaded... Getting seq... Got NC_003098 2043 CDS features found CodonUsage sphere 0.043795373 0.01444587 0.025168385 0.02983449 0.018436395 0.011951154 0.005860711 0.018201558 0.007271434 0.008101871 0.002213933 0.0144203445 0.0071948566 0.025615936 0.021696884 0.04021326 0.026950082 0.007181243 0.013838357 0.012151957 0.015342674 0.0029711968 0.002952478 0.011879682 0.0047767176 0.0068068653 0.0019382549 0.018179435 0.011615916 0.012647156 0.00924032 0.02067075 0.051613055 0.018286644 0.021106388 0.036816634 0.019598667 0.01575449 0.0075981636 0.030384146 0.020754132 0.009301581 0.008627702 0.027324459 0.014507132 0.015444778 0.012386793 0.027651189 0.0 0.013269984 0.0 0.0250833 0.014415239 0.005161306 0.0034578876 0.016729573 0.0 0.0017170318 0.009323704 0.0043683057 0.01978926 0.01389111 0.029225277 0.03284653 0.4 255 0 0 aaa:0.044 aac:0.014 aag:0.025 aat:0.030 aca:0.018 acc:0.012 acg:0.006 act:0.018 aga:0.007 agc:0.008 agg:0.002 agt:0.014 ata:0.007 atc:0.026 atg:0.022 att:0.040 caa:0.027 cac:0.007 cag:0.014 cat:0.012 cca:0.015 ccc:0.003 ccg:0.003 cct:0.012 cga:0.005 cgc:0.007 cgg:0.002 cgt:0.018 cta:0.012 ctc:0.013 ctg:0.009 ctt:0.021 gaa:0.052 gac:0.018 gag:0.021 gat:0.037 gca:0.020 gcc:0.016 gcg:0.008 gct:0.030 gga:0.021 ggc:0.009 ggg:0.009 ggt:0.027 gta:0.015 gtc:0.015 gtg:0.012 gtt:0.028 taa:0.000 tac:0.013 tag:0.000 tat:0.025 tca:0.014 tcc:0.005 tcg:0.003 tct:0.017 tga:0.000 tgc:0.002 tgg:0.009 tgt:0.004 tta:0.020 ttc:0.014 ttg:0.029 ttt:0.033 Number of points = 2043 Iteration 0 First 1021 genes (50%) aaa:0.050 aac:0.017 aag:0.022 aat:0.031 aca:0.021 acc:0.009 acg:0.005 act:0.021 aga:0.006 agc:0.007 agg:0.001 agt:0.013 ata:0.006 atc:0.025 atg:0.021 att:0.039 caa:0.028 cac:0.007 cag:0.010 cat:0.012 cca:0.019 ccc:0.002 ccg:0.003 cct:0.012 cga:0.003 cgc:0.006 cgg:0.001 cgt:0.021 cta:0.009 ctc:0.009 ctg:0.005 ctt:0.022 gaa:0.058 gac:0.019 gag:0.018 gat:0.040 gca:0.022 gcc:0.014 gcg:0.007 gct:0.034 gga:0.022 ggc:0.008 ggg:0.007 ggt:0.033 gta:0.017 gtc:0.013 gtg:0.010 gtt:0.031 taa:0.000 tac:0.014 tag:0.000 tat:0.024 tca:0.017 tcc:0.003 tcg:0.003 tct:0.018 tga:0.000 tgc:0.001 tgg:0.009 tgt:0.004 tta:0.019 ttc:0.014 ttg:0.027 ttt:0.029 CodonUsageIt0 sphere 0.050485115 0.016864626 0.021899702 0.031026177 0.021346292 0.009177658 0.0049199155 0.020716107 0.0061291014 0.007312696 0.0014267114 0.012856398 0.0061546927 0.0254089 0.021365484 0.0394361 0.028025605 0.007357481 0.009606311 0.011500062 0.018598432 0.0016058502 0.002514339 0.011605626 0.003390839 0.0059019793 8.73301E-4 0.021221533 0.009382388 0.008713816 0.005131043 0.021755751 0.058274448 0.01857284 0.017869081 0.04019104 0.022417923 0.013636931 0.006877645 0.03372925 0.021893304 0.0077957306 0.00698001 0.032667216 0.016931802 0.013285051 0.010393241 0.031458028 0.0 0.013870451 0.0 0.024407642 0.016669493 0.0033972368 0.0025527258 0.017673949 0.0 0.0013307444 0.009439968 0.0041425815 0.019378964 0.013752092 0.02730265 0.029397935 0.2 0 255 0 Iteration 1 First 510 genes (25%) aaa:0.055 aac:0.021 aag:0.018 aat:0.028 aca:0.023 acc:0.007 acg:0.004 act:0.024 aga:0.004 agc:0.007 agg:0.001 agt:0.010 ata:0.004 atc:0.028 atg:0.021 att:0.036 caa:0.028 cac:0.008 cag:0.006 cat:0.009 cca:0.022 ccc:0.001 ccg:0.002 cct:0.010 cga:0.002 cgc:0.006 cgg:0.000 cgt:0.024 cta:0.008 ctc:0.007 ctg:0.003 ctt:0.025 gaa:0.062 gac:0.021 gag:0.015 gat:0.039 gca:0.027 gcc:0.013 gcg:0.007 gct:0.038 gga:0.023 ggc:0.007 ggg:0.006 ggt:0.038 gta:0.020 gtc:0.012 gtg:0.009 gtt:0.036 taa:0.000 tac:0.015 tag:0.000 tat:0.020 tca:0.019 tcc:0.002 tcg:0.002 tct:0.018 tga:0.000 tgc:0.001 tgg:0.009 tgt:0.003 tta:0.016 ttc:0.015 ttg:0.027 ttt:0.025 CodonUsageIt1 sphere 0.05536036 0.020556167 0.018349255 0.028302241 0.023419525 0.0070458637 0.0039386814 0.023607083 0.004163749 0.007089627 8.440032E-4 0.010309343 0.003907422 0.028214714 0.021206362 0.036248375 0.028352255 0.007858608 0.0062081125 0.009459088 0.021875313 6.8145443E-4 0.0022256677 0.010484396 0.001956837 0.0059517855 3.2509753E-4 0.02449485 0.007589777 0.0070146043 0.0029008703 0.024907472 0.062106133 0.020549916 0.014841952 0.039074223 0.026745524 0.012803841 0.0069083227 0.037917625 0.022750575 0.0071083824 0.0057954886 0.03846154 0.019762179 0.012009853 0.009452836 0.035585675 0.0 0.015235821 0.0 0.020062268 0.019174503 0.0020256077 0.0017442732 0.017705312 0.0 0.0010378114 0.008927679 0.0030946785 0.016198609 0.015398369 0.027483245 0.025188807 0.2 0 255 0 Iteration 2 First 245 genes (12%) aaa:0.059 aac:0.025 aag:0.014 aat:0.021 aca:0.024 acc:0.005 acg:0.003 act:0.026 aga:0.002 agc:0.007 agg:0.000 agt:0.007 ata:0.002 atc:0.036 atg:0.021 att:0.030 caa:0.029 cac:0.010 cag:0.003 cat:0.007 cca:0.025 ccc:0.000 ccg:0.001 cct:0.010 cga:0.001 cgc:0.007 cgg:0.000 cgt:0.030 cta:0.005 ctc:0.006 ctg:0.002 ctt:0.030 gaa:0.065 gac:0.024 gag:0.012 gat:0.036 gca:0.031 gcc:0.013 gcg:0.006 gct:0.044 gga:0.023 ggc:0.007 ggg:0.004 ggt:0.046 gta:0.021 gtc:0.010 gtg:0.009 gtt:0.040 taa:0.000 tac:0.018 tag:0.000 tat:0.014 tca:0.021 tcc:0.001 tcg:0.001 tct:0.016 tga:0.000 tgc:0.001 tgg:0.009 tgt:0.003 tta:0.009 ttc:0.019 ttg:0.029 ttt:0.021 CodonUsageIt2 sphere 0.058652285 0.02524785 0.013630083 0.02063294 0.02418803 0.005111281 0.0026562563 0.026347917 0.0016232678 0.007110181 2.5489327E-4 0.0067345486 0.0015427751 0.03639608 0.021370789 0.029742021 0.028829772 0.009551791 0.0033136127 0.0066272253 0.024831971 2.951396E-4 0.0013415436 0.009645699 9.5249596E-4 0.0069223647 1.878161E-4 0.029648114 0.005486913 0.0060771923 0.0015025288 0.030198146 0.06542708 0.02442951 0.011832414 0.03561798 0.0305067 0.012838572 0.0064528245 0.043747738 0.022819657 0.0070431037 0.0041722003 0.046484485 0.021182973 0.010477455 0.008505386 0.039521873 0.0 0.018392563 0.0 0.013858145 0.021370789 9.390805E-4 8.585879E-4 0.016219262 0.0 8.988342E-4 0.008813941 0.0027635798 0.009363974 0.018875519 0.028977342 0.02095491 0.2 0 255 0 Iteration 3 First 122 genes (6%) aaa:0.066 aac:0.033 aag:0.010 aat:0.012 aca:0.025 acc:0.002 acg:0.001 act:0.030 aga:0.001 agc:0.007 agg:0.000 agt:0.003 ata:0.001 atc:0.046 atg:0.020 att:0.019 caa:0.030 cac:0.012 cag:0.001 cat:0.004 cca:0.025 ccc:0.000 ccg:0.001 cct:0.008 cga:0.000 cgc:0.008 cgg:0.000 cgt:0.034 cta:0.003 ctc:0.004 ctg:0.001 ctt:0.038 gaa:0.068 gac:0.030 gag:0.009 gat:0.028 gca:0.034 gcc:0.010 gcg:0.006 gct:0.051 gga:0.019 ggc:0.006 ggg:0.003 ggt:0.052 gta:0.024 gtc:0.009 gtg:0.007 gtt:0.045 taa:0.000 tac:0.022 tag:0.000 tat:0.008 tca:0.025 tcc:0.000 tcg:0.000 tct:0.015 tga:0.000 tgc:0.001 tgg:0.008 tgt:0.003 tta:0.003 ttc:0.022 ttg:0.031 ttt:0.017 CodonUsageIt3 sphere 0.06557579 0.033342578 0.010230809 0.0120489355 0.024745 0.0022495454 0.0014483375 0.02989122 6.779452E-4 0.006810268 1.2326277E-4 0.0027734123 6.471295E-4 0.045514777 0.020369172 0.01895165 0.029644694 0.012480355 0.0011401806 0.00400604 0.025330499 1.2326277E-4 7.395766E-4 0.008443499 9.244707E-5 0.0077347388 1.5407846E-4 0.033712365 0.0028042279 0.004375828 6.1631383E-4 0.038026564 0.06847247 0.029644694 0.009090629 0.028227173 0.03405134 0.010323256 0.00600906 0.05133894 0.019290622 0.0056392713 0.0026193338 0.05186281 0.02431358 0.00872084 0.007118425 0.0453607 0.0 0.022002403 0.0 0.007611476 0.02452929 3.0815692E-4 3.0815692E-4 0.0146374535 0.0 0.0010785492 0.0077655544 0.0026501494 0.0026809652 0.022002403 0.030846506 0.016671289 0.2 0 255 0 Iteration 4 First 61 genes (3%) aaa:0.074 aac:0.036 aag:0.007 aat:0.008 aca:0.022 acc:0.000 acg:0.000 act:0.034 aga:0.000 agc:0.004 agg:0.000 agt:0.001 ata:0.001 atc:0.047 atg:0.018 att:0.013 caa:0.030 cac:0.014 cag:0.001 cat:0.002 cca:0.025 ccc:0.000 ccg:0.000 cct:0.007 cga:0.000 cgc:0.009 cgg:0.000 cgt:0.045 cta:0.001 ctc:0.002 ctg:0.000 ctt:0.040 gaa:0.074 gac:0.031 gag:0.008 gat:0.025 gca:0.037 gcc:0.005 gcg:0.005 gct:0.056 gga:0.020 ggc:0.004 ggg:0.001 ggt:0.056 gta:0.028 gtc:0.005 gtg:0.005 gtt:0.054 taa:0.000 tac:0.022 tag:0.000 tat:0.005 tca:0.028 tcc:0.000 tcg:0.000 tct:0.013 tga:0.000 tgc:0.001 tgg:0.006 tgt:0.002 tta:0.001 ttc:0.022 ttg:0.029 ttt:0.012 CodonUsageIt4 sphere 0.07415351 0.036387313 0.007047648 0.007813697 0.022062203 4.5962923E-4 4.5962923E-4 0.03378275 3.0641948E-4 0.0043664775 2.2981461E-4 0.0013022828 6.1283895E-4 0.047188602 0.017695725 0.013329248 0.029799296 0.013635667 5.362341E-4 0.0024513558 0.025356213 0.0 3.8302437E-4 0.0068944385 7.660487E-5 0.009345794 7.660487E-5 0.044737246 0.0014554926 0.001761912 3.0641948E-4 0.040140953 0.07407691 0.030948369 0.0075072777 0.025432818 0.036540523 0.005362341 0.005362341 0.05630458 0.019764056 0.0040600584 0.0010724682 0.05599816 0.028267197 0.004826107 0.005362341 0.054083038 0.0 0.021908993 0.0 0.005209131 0.028037382 7.660487E-5 1.5320974E-4 0.012563199 0.0 7.6604873E-4 0.0057453653 0.0016853071 0.0012256779 0.022062203 0.02926306 0.012180175 0.2 0 255 0 Iteration 5 First 20 genes (1%) aaa:0.072 aac:0.037 aag:0.004 aat:0.004 aca:0.015 acc:0.000 acg:0.000 act:0.037 aga:0.000 agc:0.001 agg:0.000 agt:0.001 ata:0.000 atc:0.053 atg:0.016 att:0.010 caa:0.032 cac:0.015 cag:0.000 cat:0.001 cca:0.026 ccc:0.000 ccg:0.000 cct:0.007 cga:0.000 cgc:0.008 cgg:0.000 cgt:0.042 cta:0.001 ctc:0.001 ctg:0.000 ctt:0.042 gaa:0.072 gac:0.037 gag:0.007 gat:0.025 gca:0.040 gcc:0.005 gcg:0.004 gct:0.065 gga:0.020 ggc:0.003 ggg:0.000 ggt:0.060 gta:0.030 gtc:0.004 gtg:0.003 gtt:0.054 taa:0.000 tac:0.023 tag:0.000 tat:0.004 tca:0.032 tcc:0.000 tcg:0.000 tct:0.010 tga:0.000 tgc:0.001 tgg:0.007 tgt:0.002 tta:0.000 ttc:0.022 ttg:0.029 ttt:0.012 CodonUsageIt5 sphere 0.072289154 0.037373986 0.0041799853 0.0041799853 0.015490534 4.9176294E-4 0.0 0.037373986 0.0 0.0014752889 4.9176294E-4 0.0014752889 4.9176294E-4 0.053356282 0.015982296 0.0103270225 0.031718712 0.015490534 2.4588147E-4 0.0014752889 0.025571674 0.0 2.4588147E-4 0.0066388003 0.0 0.007868207 0.0 0.04155397 0.0012294074 0.0012294074 0.0 0.042291615 0.07155151 0.03663634 0.0073764445 0.02483403 0.04007868 0.0046717483 0.0041799853 0.065404475 0.019670518 0.0029505778 2.4588147E-4 0.05950332 0.02975166 0.0036882223 0.0027046963 0.054339807 0.0 0.022866977 0.0 0.0036882223 0.031718712 0.0 2.4588147E-4 0.009589378 0.0 9.835259E-4 0.0071305633 0.0024588148 2.4588147E-4 0.022375215 0.029014016 0.01155643 0.2 0 255 0 Iteration 6 First 20 genes (1%) aaa:0.072 aac:0.037 aag:0.004 aat:0.004 aca:0.015 acc:0.000 acg:0.000 act:0.037 aga:0.000 agc:0.001 agg:0.000 agt:0.001 ata:0.000 atc:0.053 atg:0.016 att:0.010 caa:0.032 cac:0.015 cag:0.000 cat:0.001 cca:0.026 ccc:0.000 ccg:0.000 cct:0.007 cga:0.000 cgc:0.008 cgg:0.000 cgt:0.042 cta:0.001 ctc:0.001 ctg:0.000 ctt:0.042 gaa:0.072 gac:0.037 gag:0.007 gat:0.025 gca:0.040 gcc:0.005 gcg:0.004 gct:0.065 gga:0.020 ggc:0.003 ggg:0.000 ggt:0.060 gta:0.030 gtc:0.004 gtg:0.003 gtt:0.054 taa:0.000 tac:0.023 tag:0.000 tat:0.004 tca:0.032 tcc:0.000 tcg:0.000 tct:0.010 tga:0.000 tgc:0.001 tgg:0.007 tgt:0.002 tta:0.000 ttc:0.022 ttg:0.029 ttt:0.012 CodonUsageIt6 sphere 0.072289154 0.037373986 0.0041799853 0.0041799853 0.015490534 4.9176294E-4 0.0 0.037373986 0.0 0.0014752889 4.9176294E-4 0.0014752889 4.9176294E-4 0.053356282 0.015982296 0.0103270225 0.031718712 0.015490534 2.4588147E-4 0.0014752889 0.025571674 0.0 2.4588147E-4 0.0066388003 0.0 0.007868207 0.0 0.04155397 0.0012294074 0.0012294074 0.0 0.042291615 0.07155151 0.03663634 0.0073764445 0.02483403 0.04007868 0.0046717483 0.0041799853 0.065404475 0.019670518 0.0029505778 2.4588147E-4 0.05950332 0.02975166 0.0036882223 0.0027046963 0.054339807 0.0 0.022866977 0.0 0.0036882223 0.031718712 0.0 2.4588147E-4 0.009589378 0.0 9.835259E-4 0.0071305633 0.0024588148 2.4588147E-4 0.022375215 0.029014016 0.01155643 0.2 0 255 0 Iteration 7 First 20 genes (1%) aaa:0.072 aac:0.037 aag:0.004 aat:0.004 aca:0.015 acc:0.000 acg:0.000 act:0.037 aga:0.000 agc:0.001 agg:0.000 agt:0.001 ata:0.000 atc:0.053 atg:0.016 att:0.010 caa:0.032 cac:0.015 cag:0.000 cat:0.001 cca:0.026 ccc:0.000 ccg:0.000 cct:0.007 cga:0.000 cgc:0.008 cgg:0.000 cgt:0.042 cta:0.001 ctc:0.001 ctg:0.000 ctt:0.042 gaa:0.072 gac:0.037 gag:0.007 gat:0.025 gca:0.040 gcc:0.005 gcg:0.004 gct:0.065 gga:0.020 ggc:0.003 ggg:0.000 ggt:0.060 gta:0.030 gtc:0.004 gtg:0.003 gtt:0.054 taa:0.000 tac:0.023 tag:0.000 tat:0.004 tca:0.032 tcc:0.000 tcg:0.000 tct:0.010 tga:0.000 tgc:0.001 tgg:0.007 tgt:0.002 tta:0.000 ttc:0.022 ttg:0.029 ttt:0.012 CodonUsageIt7 sphere 0.072289154 0.037373986 0.0041799853 0.0041799853 0.015490534 4.9176294E-4 0.0 0.037373986 0.0 0.0014752889 4.9176294E-4 0.0014752889 4.9176294E-4 0.053356282 0.015982296 0.0103270225 0.031718712 0.015490534 2.4588147E-4 0.0014752889 0.025571674 0.0 2.4588147E-4 0.0066388003 0.0 0.007868207 0.0 0.04155397 0.0012294074 0.0012294074 0.0 0.042291615 0.07155151 0.03663634 0.0073764445 0.02483403 0.04007868 0.0046717483 0.0041799853 0.065404475 0.019670518 0.0029505778 2.4588147E-4 0.05950332 0.02975166 0.0036882223 0.0027046963 0.054339807 0.0 0.022866977 0.0 0.0036882223 0.031718712 0.0 2.4588147E-4 0.009589378 0.0 9.835259E-4 0.0071305633 0.0024588148 2.4588147E-4 0.022375215 0.029014016 0.01155643 0.2 0 255 0 Iteration 8 First 20 genes (1%) aaa:0.072 aac:0.037 aag:0.004 aat:0.004 aca:0.015 acc:0.000 acg:0.000 act:0.037 aga:0.000 agc:0.001 agg:0.000 agt:0.001 ata:0.000 atc:0.053 atg:0.016 att:0.010 caa:0.032 cac:0.015 cag:0.000 cat:0.001 cca:0.026 ccc:0.000 ccg:0.000 cct:0.007 cga:0.000 cgc:0.008 cgg:0.000 cgt:0.042 cta:0.001 ctc:0.001 ctg:0.000 ctt:0.042 gaa:0.072 gac:0.037 gag:0.007 gat:0.025 gca:0.040 gcc:0.005 gcg:0.004 gct:0.065 gga:0.020 ggc:0.003 ggg:0.000 ggt:0.060 gta:0.030 gtc:0.004 gtg:0.003 gtt:0.054 taa:0.000 tac:0.023 tag:0.000 tat:0.004 tca:0.032 tcc:0.000 tcg:0.000 tct:0.010 tga:0.000 tgc:0.001 tgg:0.007 tgt:0.002 tta:0.000 ttc:0.022 ttg:0.029 ttt:0.012 CodonUsageIt8 sphere 0.072289154 0.037373986 0.0041799853 0.0041799853 0.015490534 4.9176294E-4 0.0 0.037373986 0.0 0.0014752889 4.9176294E-4 0.0014752889 4.9176294E-4 0.053356282 0.015982296 0.0103270225 0.031718712 0.015490534 2.4588147E-4 0.0014752889 0.025571674 0.0 2.4588147E-4 0.0066388003 0.0 0.007868207 0.0 0.04155397 0.0012294074 0.0012294074 0.0 0.042291615 0.07155151 0.03663634 0.0073764445 0.02483403 0.04007868 0.0046717483 0.0041799853 0.065404475 0.019670518 0.0029505778 2.4588147E-4 0.05950332 0.02975166 0.0036882223 0.0027046963 0.054339807 0.0 0.022866977 0.0 0.0036882223 0.031718712 0.0 2.4588147E-4 0.009589378 0.0 9.835259E-4 0.0071305633 0.0024588148 2.4588147E-4 0.022375215 0.029014016 0.01155643 0.2 0 255 0 Iteration 9 First 20 genes (1%) aaa:0.072 aac:0.037 aag:0.004 aat:0.004 aca:0.015 acc:0.000 acg:0.000 act:0.037 aga:0.000 agc:0.001 agg:0.000 agt:0.001 ata:0.000 atc:0.053 atg:0.016 att:0.010 caa:0.032 cac:0.015 cag:0.000 cat:0.001 cca:0.026 ccc:0.000 ccg:0.000 cct:0.007 cga:0.000 cgc:0.008 cgg:0.000 cgt:0.042 cta:0.001 ctc:0.001 ctg:0.000 ctt:0.042 gaa:0.072 gac:0.037 gag:0.007 gat:0.025 gca:0.040 gcc:0.005 gcg:0.004 gct:0.065 gga:0.020 ggc:0.003 ggg:0.000 ggt:0.060 gta:0.030 gtc:0.004 gtg:0.003 gtt:0.054 taa:0.000 tac:0.023 tag:0.000 tat:0.004 tca:0.032 tcc:0.000 tcg:0.000 tct:0.010 tga:0.000 tgc:0.001 tgg:0.007 tgt:0.002 tta:0.000 ttc:0.022 ttg:0.029 ttt:0.012 CodonUsageIt9 sphere 0.072289154 0.037373986 0.0041799853 0.0041799853 0.015490534 4.9176294E-4 0.0 0.037373986 0.0 0.0014752889 4.9176294E-4 0.0014752889 4.9176294E-4 0.053356282 0.015982296 0.0103270225 0.031718712 0.015490534 2.4588147E-4 0.0014752889 0.025571674 0.0 2.4588147E-4 0.0066388003 0.0 0.007868207 0.0 0.04155397 0.0012294074 0.0012294074 0.0 0.042291615 0.07155151 0.03663634 0.0073764445 0.02483403 0.04007868 0.0046717483 0.0041799853 0.065404475 0.019670518 0.0029505778 2.4588147E-4 0.05950332 0.02975166 0.0036882223 0.0027046963 0.054339807 0.0 0.022866977 0.0 0.0036882223 0.031718712 0.0 2.4588147E-4 0.009589378 0.0 9.835259E-4 0.0071305633 0.0024588148 2.4588147E-4 0.022375215 0.029014016 0.01155643 0.2 0 255 0 Iteration 10 First 20 genes (1%) aaa:0.072 aac:0.037 aag:0.004 aat:0.004 aca:0.015 acc:0.000 acg:0.000 act:0.037 aga:0.000 agc:0.001 agg:0.000 agt:0.001 ata:0.000 atc:0.053 atg:0.016 att:0.010 caa:0.032 cac:0.015 cag:0.000 cat:0.001 cca:0.026 ccc:0.000 ccg:0.000 cct:0.007 cga:0.000 cgc:0.008 cgg:0.000 cgt:0.042 cta:0.001 ctc:0.001 ctg:0.000 ctt:0.042 gaa:0.072 gac:0.037 gag:0.007 gat:0.025 gca:0.040 gcc:0.005 gcg:0.004 gct:0.065 gga:0.020 ggc:0.003 ggg:0.000 ggt:0.060 gta:0.030 gtc:0.004 gtg:0.003 gtt:0.054 taa:0.000 tac:0.023 tag:0.000 tat:0.004 tca:0.032 tcc:0.000 tcg:0.000 tct:0.010 tga:0.000 tgc:0.001 tgg:0.007 tgt:0.002 tta:0.000 ttc:0.022 ttg:0.029 ttt:0.012 CodonUsageIt10 sphere 0.072289154 0.037373986 0.0041799853 0.0041799853 0.015490534 4.9176294E-4 0.0 0.037373986 0.0 0.0014752889 4.9176294E-4 0.0014752889 4.9176294E-4 0.053356282 0.015982296 0.0103270225 0.031718712 0.015490534 2.4588147E-4 0.0014752889 0.025571674 0.0 2.4588147E-4 0.0066388003 0.0 0.007868207 0.0 0.04155397 0.0012294074 0.0012294074 0.0 0.042291615 0.07155151 0.03663634 0.0073764445 0.02483403 0.04007868 0.0046717483 0.0041799853 0.065404475 0.019670518 0.0029505778 2.4588147E-4 0.05950332 0.02975166 0.0036882223 0.0027046963 0.054339807 0.0 0.022866977 0.0 0.0036882223 0.031718712 0.0 2.4588147E-4 0.009589378 0.0 9.835259E-4 0.0071305633 0.0024588148 2.4588147E-4 0.022375215 0.029014016 0.01155643 0.2 0 255 0 Iteration 11 First 20 genes (1%) aaa:0.072 aac:0.037 aag:0.004 aat:0.004 aca:0.015 acc:0.000 acg:0.000 act:0.037 aga:0.000 agc:0.001 agg:0.000 agt:0.001 ata:0.000 atc:0.053 atg:0.016 att:0.010 caa:0.032 cac:0.015 cag:0.000 cat:0.001 cca:0.026 ccc:0.000 ccg:0.000 cct:0.007 cga:0.000 cgc:0.008 cgg:0.000 cgt:0.042 cta:0.001 ctc:0.001 ctg:0.000 ctt:0.042 gaa:0.072 gac:0.037 gag:0.007 gat:0.025 gca:0.040 gcc:0.005 gcg:0.004 gct:0.065 gga:0.020 ggc:0.003 ggg:0.000 ggt:0.060 gta:0.030 gtc:0.004 gtg:0.003 gtt:0.054 taa:0.000 tac:0.023 tag:0.000 tat:0.004 tca:0.032 tcc:0.000 tcg:0.000 tct:0.010 tga:0.000 tgc:0.001 tgg:0.007 tgt:0.002 tta:0.000 ttc:0.022 ttg:0.029 ttt:0.012 CodonUsageIt11 sphere 0.072289154 0.037373986 0.0041799853 0.0041799853 0.015490534 4.9176294E-4 0.0 0.037373986 0.0 0.0014752889 4.9176294E-4 0.0014752889 4.9176294E-4 0.053356282 0.015982296 0.0103270225 0.031718712 0.015490534 2.4588147E-4 0.0014752889 0.025571674 0.0 2.4588147E-4 0.0066388003 0.0 0.007868207 0.0 0.04155397 0.0012294074 0.0012294074 0.0 0.042291615 0.07155151 0.03663634 0.0073764445 0.02483403 0.04007868 0.0046717483 0.0041799853 0.065404475 0.019670518 0.0029505778 2.4588147E-4 0.05950332 0.02975166 0.0036882223 0.0027046963 0.054339807 0.0 0.022866977 0.0 0.0036882223 0.031718712 0.0 2.4588147E-4 0.009589378 0.0 9.835259E-4 0.0071305633 0.0024588148 2.4588147E-4 0.022375215 0.029014016 0.01155643 0.2 0 255 0 Iteration 12 First 20 genes (1%) aaa:0.072 aac:0.037 aag:0.004 aat:0.004 aca:0.015 acc:0.000 acg:0.000 act:0.037 aga:0.000 agc:0.001 agg:0.000 agt:0.001 ata:0.000 atc:0.053 atg:0.016 att:0.010 caa:0.032 cac:0.015 cag:0.000 cat:0.001 cca:0.026 ccc:0.000 ccg:0.000 cct:0.007 cga:0.000 cgc:0.008 cgg:0.000 cgt:0.042 cta:0.001 ctc:0.001 ctg:0.000 ctt:0.042 gaa:0.072 gac:0.037 gag:0.007 gat:0.025 gca:0.040 gcc:0.005 gcg:0.004 gct:0.065 gga:0.020 ggc:0.003 ggg:0.000 ggt:0.060 gta:0.030 gtc:0.004 gtg:0.003 gtt:0.054 taa:0.000 tac:0.023 tag:0.000 tat:0.004 tca:0.032 tcc:0.000 tcg:0.000 tct:0.010 tga:0.000 tgc:0.001 tgg:0.007 tgt:0.002 tta:0.000 ttc:0.022 ttg:0.029 ttt:0.012 CodonUsageIt12 sphere 0.072289154 0.037373986 0.0041799853 0.0041799853 0.015490534 4.9176294E-4 0.0 0.037373986 0.0 0.0014752889 4.9176294E-4 0.0014752889 4.9176294E-4 0.053356282 0.015982296 0.0103270225 0.031718712 0.015490534 2.4588147E-4 0.0014752889 0.025571674 0.0 2.4588147E-4 0.0066388003 0.0 0.007868207 0.0 0.04155397 0.0012294074 0.0012294074 0.0 0.042291615 0.07155151 0.03663634 0.0073764445 0.02483403 0.04007868 0.0046717483 0.0041799853 0.065404475 0.019670518 0.0029505778 2.4588147E-4 0.05950332 0.02975166 0.0036882223 0.0027046963 0.054339807 0.0 0.022866977 0.0 0.0036882223 0.031718712 0.0 2.4588147E-4 0.009589378 0.0 9.835259E-4 0.0071305633 0.0024588148 2.4588147E-4 0.022375215 0.029014016 0.01155643 0.2 0 255 0 Iteration 13 First 20 genes (1%) aaa:0.072 aac:0.037 aag:0.004 aat:0.004 aca:0.015 acc:0.000 acg:0.000 act:0.037 aga:0.000 agc:0.001 agg:0.000 agt:0.001 ata:0.000 atc:0.053 atg:0.016 att:0.010 caa:0.032 cac:0.015 cag:0.000 cat:0.001 cca:0.026 ccc:0.000 ccg:0.000 cct:0.007 cga:0.000 cgc:0.008 cgg:0.000 cgt:0.042 cta:0.001 ctc:0.001 ctg:0.000 ctt:0.042 gaa:0.072 gac:0.037 gag:0.007 gat:0.025 gca:0.040 gcc:0.005 gcg:0.004 gct:0.065 gga:0.020 ggc:0.003 ggg:0.000 ggt:0.060 gta:0.030 gtc:0.004 gtg:0.003 gtt:0.054 taa:0.000 tac:0.023 tag:0.000 tat:0.004 tca:0.032 tcc:0.000 tcg:0.000 tct:0.010 tga:0.000 tgc:0.001 tgg:0.007 tgt:0.002 tta:0.000 ttc:0.022 ttg:0.029 ttt:0.012 CodonUsageIt13 sphere 0.072289154 0.037373986 0.0041799853 0.0041799853 0.015490534 4.9176294E-4 0.0 0.037373986 0.0 0.0014752889 4.9176294E-4 0.0014752889 4.9176294E-4 0.053356282 0.015982296 0.0103270225 0.031718712 0.015490534 2.4588147E-4 0.0014752889 0.025571674 0.0 2.4588147E-4 0.0066388003 0.0 0.007868207 0.0 0.04155397 0.0012294074 0.0012294074 0.0 0.042291615 0.07155151 0.03663634 0.0073764445 0.02483403 0.04007868 0.0046717483 0.0041799853 0.065404475 0.019670518 0.0029505778 2.4588147E-4 0.05950332 0.02975166 0.0036882223 0.0027046963 0.054339807 0.0 0.022866977 0.0 0.0036882223 0.031718712 0.0 2.4588147E-4 0.009589378 0.0 9.835259E-4 0.0071305633 0.0024588148 2.4588147E-4 0.022375215 0.029014016 0.01155643 0.2 0 255 0 Iteration 14 First 20 genes (1%) aaa:0.072 aac:0.037 aag:0.004 aat:0.004 aca:0.015 acc:0.000 acg:0.000 act:0.037 aga:0.000 agc:0.001 agg:0.000 agt:0.001 ata:0.000 atc:0.053 atg:0.016 att:0.010 caa:0.032 cac:0.015 cag:0.000 cat:0.001 cca:0.026 ccc:0.000 ccg:0.000 cct:0.007 cga:0.000 cgc:0.008 cgg:0.000 cgt:0.042 cta:0.001 ctc:0.001 ctg:0.000 ctt:0.042 gaa:0.072 gac:0.037 gag:0.007 gat:0.025 gca:0.040 gcc:0.005 gcg:0.004 gct:0.065 gga:0.020 ggc:0.003 ggg:0.000 ggt:0.060 gta:0.030 gtc:0.004 gtg:0.003 gtt:0.054 taa:0.000 tac:0.023 tag:0.000 tat:0.004 tca:0.032 tcc:0.000 tcg:0.000 tct:0.010 tga:0.000 tgc:0.001 tgg:0.007 tgt:0.002 tta:0.000 ttc:0.022 ttg:0.029 ttt:0.012 CodonUsageIt14 sphere 0.072289154 0.037373986 0.0041799853 0.0041799853 0.015490534 4.9176294E-4 0.0 0.037373986 0.0 0.0014752889 4.9176294E-4 0.0014752889 4.9176294E-4 0.053356282 0.015982296 0.0103270225 0.031718712 0.015490534 2.4588147E-4 0.0014752889 0.025571674 0.0 2.4588147E-4 0.0066388003 0.0 0.007868207 0.0 0.04155397 0.0012294074 0.0012294074 0.0 0.042291615 0.07155151 0.03663634 0.0073764445 0.02483403 0.04007868 0.0046717483 0.0041799853 0.065404475 0.019670518 0.0029505778 2.4588147E-4 0.05950332 0.02975166 0.0036882223 0.0027046963 0.054339807 0.0 0.022866977 0.0 0.0036882223 0.031718712 0.0 2.4588147E-4 0.009589378 0.0 9.835259E-4 0.0071305633 0.0024588148 2.4588147E-4 0.022375215 0.029014016 0.01155643 0.2 0 255 0 aaa:1.000 aac:1.000 aag:0.058 aat:0.112 aca:0.414 acc:0.013 acg:0.000 act:1.000 aga:0.000 agc:0.047 agg:0.012 agt:0.047 ata:0.009 atc:1.000 atg:1.000 att:0.194 caa:1.000 cac:1.000 cag:0.008 cat:0.095 cca:1.000 ccc:0.000 ccg:0.010 cct:0.260 cga:0.000 cgc:0.189 cgg:0.000 cgt:1.000 cta:0.029 ctc:0.029 ctg:0.000 ctt:1.000 gaa:1.000 gac:1.000 gag:0.103 gat:0.678 gca:0.613 gcc:0.071 gcg:0.064 gct:1.000 gga:0.331 ggc:0.050 ggg:0.004 ggt:1.000 gta:0.548 gtc:0.068 gtg:0.050 gtt:1.000 taa:0.000 tac:1.000 tag:0.000 tat:0.161 tca:1.000 tcc:0.000 tcg:0.008 tct:0.302 tga:0.000 tgc:0.400 tgg:1.000 tgt:1.000 tta:0.006 ttc:1.000 ttg:0.686 ttt:0.516 ttt:0.516 ttc:1.000 ttg:0.686 tta:0.006 tct:0.302 tcc:0.000 tcg:0.008 tca:1.000 tgt:1.000 tgc:0.400 tgg:1.000 tga:0.000 tat:0.161 tac:1.000 tag:0.000 taa:0.000 ctt:1.000 ctc:0.029 ctg:0.000 cta:0.029 cct:0.260 ccc:0.000 ccg:0.010 cca:1.000 cgt:1.000 cgc:0.189 cgg:0.000 cga:0.000 cat:0.095 cac:1.000 cag:0.008 caa:1.000 gtt:1.000 gtc:0.068 gtg:0.050 gta:0.548 gct:1.000 gcc:0.071 gcg:0.064 gca:0.613 ggt:1.000 ggc:0.050 ggg:0.004 gga:0.331 gat:0.678 gac:1.000 gag:0.103 gaa:1.000 att:0.194 atc:1.000 atg:1.000 ata:0.009 act:1.000 acc:0.013 acg:0.000 aca:0.414 agt:0.047 agc:0.047 agg:0.012 aga:0.000 aat:0.112 aac:1.000 aag:0.058 aaa:1.000 // 0 - CAICLASS // 1 - STRAND // 2 - GC_CONT // 3 - GC_CONT3 // 4 - GC_SKEW // 5 - AT_SKEW // 6 - GENELENGTH // 7 - CAIEXT --- -0.04887553 0.146395 -0.2869873 -0.14143091 0.25259727 0.05379914 NaN