AdditionalInfoFile = "" ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 Looking for randomclass.txt... Loading sequence... Loaded... Getting seq... Got NC_003888 7567 CDS features found Getting seq... Got NC_003903 356 CDS features found Getting seq... Got NC_003904 34 CDS features found CodonUsage sphere 0.0010588658 0.016137082 0.019377008 7.233485E-4 0.0017035467 0.03979715 0.01914966 0.0012449146 8.169629E-4 0.0125777675 0.0037406438 0.0015336247 6.7182124E-4 0.027399136 0.013924164 6.4428756E-4 0.0013833696 0.021937639 0.025140196 0.0017472073 0.0014368636 0.025674742 0.033694115 0.0016496594 0.002695545 0.039207533 0.032314286 0.005548425 3.67771E-4 0.03664061 0.06108578 0.0016354992 0.008821391 0.05816013 0.048082814 0.00312979 0.0057899347 0.07882493 0.05006563 0.0032037375 0.007305859 0.061111346 0.018467218 0.009262322 0.0026971183 0.04707744 0.03524387 0.001497831 1.1800139E-6 0.019454889 3.5400417E-6 9.825582E-4 0.0011501202 0.020213244 0.013845496 6.863747E-4 2.871367E-5 0.0071945447 0.01533546 7.5402885E-4 6.52941E-5 0.025930017 0.0024992693 4.546987E-4 0.4 255 0 0 aaa:0.001 aac:0.016 aag:0.019 aat:0.001 aca:0.002 acc:0.040 acg:0.019 act:0.001 aga:0.001 agc:0.013 agg:0.004 agt:0.002 ata:0.001 atc:0.027 atg:0.014 att:0.001 caa:0.001 cac:0.022 cag:0.025 cat:0.002 cca:0.001 ccc:0.026 ccg:0.034 cct:0.002 cga:0.003 cgc:0.039 cgg:0.032 cgt:0.006 cta:0.000 ctc:0.037 ctg:0.061 ctt:0.002 gaa:0.009 gac:0.058 gag:0.048 gat:0.003 gca:0.006 gcc:0.079 gcg:0.050 gct:0.003 gga:0.007 ggc:0.061 ggg:0.018 ggt:0.009 gta:0.003 gtc:0.047 gtg:0.035 gtt:0.001 taa:0.000 tac:0.019 tag:0.000 tat:0.001 tca:0.001 tcc:0.020 tcg:0.014 tct:0.001 tga:0.000 tgc:0.007 tgg:0.015 tgt:0.001 tta:0.000 ttc:0.026 ttg:0.002 ttt:0.000 Number of points = 7957 Iteration 0 First 3978 genes (50%) aaa:0.001 aac:0.018 aag:0.023 aat:0.000 aca:0.001 acc:0.043 acg:0.018 act:0.001 aga:0.000 agc:0.012 agg:0.003 agt:0.001 ata:0.000 atc:0.030 atg:0.015 att:0.000 caa:0.001 cac:0.022 cag:0.026 cat:0.001 cca:0.001 ccc:0.025 ccg:0.033 cct:0.001 cga:0.001 cgc:0.041 cgg:0.029 cgt:0.004 cta:0.000 ctc:0.037 ctg:0.063 ctt:0.001 gaa:0.007 gac:0.062 gag:0.052 gat:0.001 gca:0.003 gcc:0.082 gcg:0.048 gct:0.001 gga:0.005 ggc:0.068 ggg:0.015 ggt:0.007 gta:0.002 gtc:0.051 gtg:0.034 gtt:0.001 taa:0.000 tac:0.022 tag:0.000 tat:0.001 tca:0.001 tcc:0.022 tcg:0.013 tct:0.000 tga:0.000 tgc:0.007 tgg:0.015 tgt:0.000 tta:0.000 ttc:0.028 ttg:0.001 ttt:0.000 CodonUsageIt0 sphere 6.145766E-4 0.018461358 0.022628656 3.4716015E-4 8.4005884E-4 0.043445203 0.017943025 5.7195494E-4 3.9596882E-4 0.011851567 0.0026824137 8.290597E-4 4.7777488E-4 0.030273741 0.014888015 2.6810387E-4 6.4551167E-4 0.022122009 0.025867213 8.1943546E-4 5.1008485E-4 0.025223764 0.03289016 5.753922E-4 0.0011652207 0.041037083 0.02946668 0.003683335 7.836883E-5 0.037065707 0.0625287 6.5376103E-4 0.0066799116 0.06207086 0.05150963 0.0013432693 0.0033499238 0.082226776 0.04755063 0.0013054596 0.0052046524 0.06801933 0.015312169 0.007330923 0.0019757194 0.050868932 0.034038883 5.836415E-4 0.0 0.021721227 0.0 5.527065E-4 5.231463E-4 0.021616735 0.013397632 2.4816795E-4 0.0 0.006803652 0.015001443 3.9940604E-4 9.624242E-6 0.028269837 0.0010889142 1.4573852E-4 0.2 0 255 0 Iteration 1 First 1989 genes (25%) aaa:0.000 aac:0.021 aag:0.028 aat:0.000 aca:0.001 acc:0.046 acg:0.016 act:0.000 aga:0.000 agc:0.011 agg:0.002 agt:0.001 ata:0.000 atc:0.034 atg:0.016 att:0.000 caa:0.000 cac:0.022 cag:0.027 cat:0.000 cca:0.000 ccc:0.024 ccg:0.032 cct:0.000 cga:0.001 cgc:0.042 cgg:0.024 cgt:0.003 cta:0.000 ctc:0.038 ctg:0.060 ctt:0.000 gaa:0.006 gac:0.064 gag:0.054 gat:0.001 gca:0.003 gcc:0.082 gcg:0.043 gct:0.001 gga:0.004 ggc:0.072 ggg:0.012 ggt:0.007 gta:0.002 gtc:0.054 gtg:0.031 gtt:0.000 taa:0.000 tac:0.024 tag:0.000 tat:0.000 tca:0.000 tcc:0.023 tcg:0.013 tct:0.000 tga:0.000 tgc:0.007 tgg:0.015 tgt:0.000 tta:0.000 ttc:0.030 ttg:0.001 ttt:0.000 CodonUsageIt1 sphere 4.898148E-4 0.021212032 0.02765396 2.5220815E-4 5.8007875E-4 0.045580648 0.016406804 4.1547974E-4 2.9734013E-4 0.01124981 0.0022207592 5.522031E-4 3.637107E-4 0.033963148 0.016004598 1.9645688E-4 4.2078938E-4 0.021920871 0.027055297 4.9910665E-4 3.1061424E-4 0.024112426 0.031557877 3.7034776E-4 7.632615E-4 0.041845314 0.02441375 0.0028579165 3.4512694E-5 0.03760556 0.05967245 4.6459396E-4 0.0056720288 0.06382061 0.053817235 9.092768E-4 0.0025021704 0.08225039 0.042874057 8.9998485E-4 0.004118957 0.07236648 0.011920153 0.006516262 0.0015610358 0.054101303 0.031095937 4.1813456E-4 0.0 0.023773937 0.0 3.889315E-4 3.5043657E-4 0.023155363 0.012928986 1.7256346E-4 0.0 0.0067525413 0.0148749715 2.7477415E-4 3.982234E-6 0.030360552 6.849442E-4 9.0263966E-5 0.2 0 255 0 Iteration 2 First 954 genes (12%) aaa:0.000 aac:0.024 aag:0.034 aat:0.000 aca:0.000 acc:0.047 acg:0.015 act:0.000 aga:0.000 agc:0.011 agg:0.002 agt:0.000 ata:0.000 atc:0.038 atg:0.017 att:0.000 caa:0.000 cac:0.022 cag:0.029 cat:0.000 cca:0.000 ccc:0.023 ccg:0.030 cct:0.000 cga:0.001 cgc:0.042 cgg:0.019 cgt:0.002 cta:0.000 ctc:0.037 ctg:0.055 ctt:0.000 gaa:0.005 gac:0.066 gag:0.057 gat:0.001 gca:0.002 gcc:0.082 gcg:0.039 gct:0.001 gga:0.003 ggc:0.076 ggg:0.009 ggt:0.006 gta:0.001 gtc:0.057 gtg:0.027 gtt:0.000 taa:0.000 tac:0.026 tag:0.000 tat:0.000 tca:0.000 tcc:0.025 tcg:0.013 tct:0.000 tga:0.000 tgc:0.007 tgg:0.015 tgt:0.000 tta:0.000 ttc:0.032 ttg:0.000 ttt:0.000 CodonUsageIt2 sphere 3.9258625E-4 0.024140049 0.03363957 1.949578E-4 4.2997542E-4 0.04698483 0.014971691 3.5252643E-4 2.5638286E-4 0.01064523 0.0019121888 3.418438E-4 3.365025E-4 0.037760388 0.01700406 1.9228715E-4 2.724068E-4 0.021554856 0.028738916 2.7507744E-4 2.24335E-4 0.022967631 0.029516077 2.8041875E-4 5.448136E-4 0.042380624 0.019274116 0.0023555176 2.1365238E-5 0.03722359 0.055480182 3.551971E-4 0.004962077 0.06552452 0.05713332 6.703344E-4 0.0020110032 0.081657946 0.039093047 7.210768E-4 0.0032902467 0.07596411 0.008906634 0.005819357 0.0011937827 0.0566072 0.027350176 3.2581988E-4 0.0 0.025673006 0.0 2.8041875E-4 2.3501762E-4 0.025050743 0.0127123175 1.6023929E-4 0.0 0.006791475 0.01463786 2.24335E-4 0.0 0.031503044 4.1128084E-4 6.9437025E-5 0.2 0 255 0 Iteration 3 First 477 genes (6%) aaa:0.000 aac:0.026 aag:0.039 aat:0.000 aca:0.000 acc:0.047 acg:0.014 act:0.000 aga:0.000 agc:0.010 agg:0.002 agt:0.000 ata:0.000 atc:0.040 atg:0.018 att:0.000 caa:0.000 cac:0.021 cag:0.030 cat:0.000 cca:0.000 ccc:0.022 ccg:0.029 cct:0.000 cga:0.000 cgc:0.043 cgg:0.016 cgt:0.002 cta:0.000 ctc:0.036 ctg:0.053 ctt:0.000 gaa:0.004 gac:0.067 gag:0.060 gat:0.000 gca:0.002 gcc:0.080 gcg:0.036 gct:0.001 gga:0.003 ggc:0.078 ggg:0.007 ggt:0.006 gta:0.001 gtc:0.059 gtg:0.025 gtt:0.000 taa:0.000 tac:0.027 tag:0.000 tat:0.000 tca:0.000 tcc:0.026 tcg:0.013 tct:0.000 tga:0.000 tgc:0.007 tgg:0.014 tgt:0.000 tta:0.000 ttc:0.032 ttg:0.000 ttt:0.000 CodonUsageIt3 sphere 2.9585641E-4 0.025628563 0.038815305 1.3736192E-4 2.9057328E-4 0.04720495 0.0140743125 3.539711E-4 1.5321137E-4 0.009699864 0.0016166441 2.4302492E-4 2.5359122E-4 0.04010968 0.018084224 1.7962711E-4 2.1132601E-4 0.02131223 0.030045277 1.6906082E-4 1.4264506E-4 0.022115268 0.029020345 2.1660917E-4 4.1208573E-4 0.042693138 0.01584945 0.0022559052 1.5849451E-5 0.036437888 0.05337567 3.3283848E-4 0.0044008642 0.06687412 0.060206782 4.91333E-4 0.0016377766 0.080472946 0.035592586 6.920927E-4 0.0026521415 0.07820648 0.006778282 0.0055050426 9.0870186E-4 0.058569007 0.024508534 2.641575E-4 0.0 0.026975766 0.0 2.1660917E-4 1.7962711E-4 0.02637877 0.012584465 1.3736192E-4 0.0 0.0071111205 0.013936951 1.9019342E-4 0.0 0.032427978 3.1170587E-4 4.2265205E-5 0.2 0 255 0 Iteration 4 First 238 genes (3%) aaa:0.000 aac:0.027 aag:0.043 aat:0.000 aca:0.000 acc:0.048 acg:0.014 act:0.000 aga:0.000 agc:0.009 agg:0.001 agt:0.000 ata:0.000 atc:0.042 atg:0.019 att:0.000 caa:0.000 cac:0.021 cag:0.031 cat:0.000 cca:0.000 ccc:0.021 ccg:0.029 cct:0.000 cga:0.000 cgc:0.043 cgg:0.013 cgt:0.002 cta:0.000 ctc:0.036 ctg:0.052 ctt:0.000 gaa:0.004 gac:0.068 gag:0.064 gat:0.000 gca:0.001 gcc:0.081 gcg:0.034 gct:0.001 gga:0.002 ggc:0.079 ggg:0.005 ggt:0.005 gta:0.001 gtc:0.060 gtg:0.022 gtt:0.000 taa:0.000 tac:0.028 tag:0.000 tat:0.000 tca:0.000 tcc:0.027 tcg:0.012 tct:0.000 tga:0.000 tgc:0.007 tgg:0.014 tgt:0.000 tta:0.000 ttc:0.032 ttg:0.000 ttt:0.000 CodonUsageIt4 sphere 2.1361436E-4 0.026783172 0.042895798 1.2206534E-4 2.2378647E-4 0.047636002 0.013640802 3.9671236E-4 1.3223746E-4 0.009114212 0.0014342678 1.627538E-4 1.7292591E-4 0.041634455 0.018655654 1.11893234E-4 1.3223746E-4 0.021066444 0.030536681 9.154901E-5 1.2206534E-4 0.020934207 0.028542947 1.8309802E-4 3.356797E-4 0.042641494 0.013172885 0.0021259715 2.0344225E-5 0.035765145 0.051796395 2.7464703E-4 0.0038450584 0.06782764 0.06359605 3.4585182E-4 0.0013223746 0.08129552 0.034076575 6.306709E-4 0.0021056272 0.07942385 0.004902958 0.0054929405 7.8325265E-4 0.059974775 0.022266753 2.3395858E-4 0.0 0.027515564 0.0 1.627538E-4 8.13769E-5 0.027139194 0.012277739 1.0172112E-4 0.0 0.0071103065 0.0135289095 1.7292591E-4 0.0 0.03240835 2.4413069E-4 6.103267E-5 0.2 0 255 0 Iteration 5 First 79 genes (1%) aaa:0.000 aac:0.030 aag:0.050 aat:0.000 aca:0.000 acc:0.048 acg:0.013 act:0.000 aga:0.000 agc:0.009 agg:0.001 agt:0.000 ata:0.000 atc:0.044 atg:0.019 att:0.000 caa:0.000 cac:0.021 cag:0.031 cat:0.000 cca:0.000 ccc:0.019 ccg:0.029 cct:0.000 cga:0.000 cgc:0.042 cgg:0.009 cgt:0.002 cta:0.000 ctc:0.035 ctg:0.050 ctt:0.000 gaa:0.003 gac:0.069 gag:0.067 gat:0.000 gca:0.001 gcc:0.083 gcg:0.031 gct:0.001 gga:0.002 ggc:0.081 ggg:0.003 ggt:0.006 gta:0.001 gtc:0.059 gtg:0.020 gtt:0.000 taa:0.000 tac:0.027 tag:0.000 tat:0.000 tca:0.000 tcc:0.029 tcg:0.012 tct:0.000 tga:0.000 tgc:0.007 tgg:0.012 tgt:0.000 tta:0.000 ttc:0.033 ttg:0.000 ttt:0.000 CodonUsageIt5 sphere 1.2560448E-4 0.029925264 0.050178986 6.280224E-5 1.884067E-4 0.0477297 0.012686051 3.768134E-4 1.2560448E-4 0.008855116 9.106324E-4 9.420335E-5 1.2560448E-4 0.04386736 0.018903473 3.140112E-5 6.280224E-5 0.020693338 0.031369716 9.420335E-5 0.0 0.019186083 0.02920304 9.420335E-5 1.884067E-4 0.0421089 0.009388934 0.0016328582 0.0 0.03516925 0.05002198 3.1401118E-4 0.0029517051 0.069333665 0.066758774 1.5700559E-4 9.7343465E-4 0.08349557 0.03146392 6.594235E-4 0.0015386548 0.08060667 0.0031715129 0.0056836023 5.024179E-4 0.059128307 0.020002512 2.8261007E-4 0.0 0.027036363 0.0 1.5700559E-4 3.140112E-5 0.028575018 0.011838221 1.5700559E-4 0.0 0.007096653 0.011555611 1.884067E-4 0.0 0.032688566 2.1980783E-4 3.140112E-5 0.2 0 255 0 Iteration 6 First 79 genes (1%) aaa:0.000 aac:0.031 aag:0.050 aat:0.000 aca:0.000 acc:0.048 acg:0.013 act:0.000 aga:0.000 agc:0.009 agg:0.001 agt:0.000 ata:0.000 atc:0.044 atg:0.019 att:0.000 caa:0.000 cac:0.021 cag:0.032 cat:0.000 cca:0.000 ccc:0.019 ccg:0.029 cct:0.000 cga:0.000 cgc:0.042 cgg:0.009 cgt:0.002 cta:0.000 ctc:0.035 ctg:0.049 ctt:0.000 gaa:0.003 gac:0.070 gag:0.066 gat:0.000 gca:0.001 gcc:0.084 gcg:0.032 gct:0.001 gga:0.001 ggc:0.081 ggg:0.003 ggt:0.006 gta:0.001 gtc:0.058 gtg:0.020 gtt:0.000 taa:0.000 tac:0.027 tag:0.000 tat:0.000 tca:0.000 tcc:0.029 tcg:0.012 tct:0.000 tga:0.000 tgc:0.007 tgg:0.012 tgt:0.000 tta:0.000 ttc:0.032 ttg:0.000 ttt:0.000 CodonUsageIt6 sphere 9.5806856E-5 0.030594321 0.05049021 3.193562E-5 1.9161371E-4 0.048063103 0.012774247 4.1516303E-4 1.2774247E-4 0.008814231 7.983904E-4 9.5806856E-5 1.2774247E-4 0.044390507 0.018618464 3.193562E-5 3.193562E-5 0.020598473 0.031967554 9.5806856E-5 3.193562E-5 0.019193307 0.029253026 9.5806856E-5 1.9161371E-4 0.041963402 0.008814231 0.0016287165 3.193562E-5 0.03528886 0.049244724 3.512918E-4 0.00284227 0.069970936 0.065915115 9.5806856E-5 9.900042E-4 0.08363938 0.031584326 7.6645485E-4 0.0014690384 0.08070131 0.0027783988 0.006131639 5.748411E-4 0.05837831 0.01989589 2.8742055E-4 0.0 0.026857855 0.0 1.596781E-4 0.0 0.028869798 0.011943921 1.596781E-4 0.0 0.007089707 0.011528758 1.9161371E-4 0.0 0.03244659 2.5548495E-4 3.193562E-5 0.2 0 255 0 Iteration 7 First 79 genes (1%) aaa:0.000 aac:0.030 aag:0.050 aat:0.000 aca:0.000 acc:0.047 acg:0.013 act:0.000 aga:0.000 agc:0.008 agg:0.001 agt:0.000 ata:0.000 atc:0.045 atg:0.019 att:0.000 caa:0.000 cac:0.021 cag:0.032 cat:0.000 cca:0.000 ccc:0.019 ccg:0.029 cct:0.000 cga:0.000 cgc:0.042 cgg:0.009 cgt:0.002 cta:0.000 ctc:0.036 ctg:0.050 ctt:0.000 gaa:0.003 gac:0.069 gag:0.067 gat:0.000 gca:0.001 gcc:0.084 gcg:0.032 gct:0.001 gga:0.001 ggc:0.080 ggg:0.002 ggt:0.007 gta:0.001 gtc:0.059 gtg:0.020 gtt:0.000 taa:0.000 tac:0.026 tag:0.000 tat:0.000 tca:0.000 tcc:0.029 tcg:0.012 tct:0.000 tga:0.000 tgc:0.007 tgg:0.011 tgt:0.000 tta:0.000 ttc:0.032 ttg:0.000 ttt:0.000 CodonUsageIt7 sphere 6.617258E-5 0.030373214 0.05029116 3.308629E-5 1.6543144E-4 0.04688327 0.013234516 4.9629435E-4 6.617258E-5 0.00847009 6.9481204E-4 3.308629E-5 9.925887E-5 0.045328215 0.019190047 3.308629E-5 3.308629E-5 0.020579671 0.031895183 9.925887E-5 0.0 0.018793013 0.029215192 9.925887E-5 2.3160402E-4 0.04155638 0.008569349 0.001720487 3.308629E-5 0.035799365 0.049794864 2.977766E-4 0.0027792482 0.068620965 0.066933565 9.925887E-5 0.0010587613 0.08367523 0.031663578 8.602435E-4 0.0013896241 0.08006882 0.0024814717 0.006551085 5.2938063E-4 0.05929063 0.020281896 2.6469032E-4 0.0 0.026469031 0.0 1.6543144E-4 0.0 0.029281367 0.012109581 1.9851774E-4 0.0 0.0073782424 0.011348597 1.6543144E-4 0.0 0.031895183 2.3160402E-4 3.308629E-5 0.2 0 255 0 Iteration 8 First 79 genes (1%) aaa:0.000 aac:0.030 aag:0.050 aat:0.000 aca:0.000 acc:0.047 acg:0.014 act:0.001 aga:0.000 agc:0.008 agg:0.001 agt:0.000 ata:0.000 atc:0.046 atg:0.019 att:0.000 caa:0.000 cac:0.020 cag:0.032 cat:0.000 cca:0.000 ccc:0.019 ccg:0.029 cct:0.000 cga:0.000 cgc:0.043 cgg:0.008 cgt:0.002 cta:0.000 ctc:0.035 ctg:0.051 ctt:0.000 gaa:0.003 gac:0.068 gag:0.069 gat:0.000 gca:0.001 gcc:0.084 gcg:0.032 gct:0.001 gga:0.001 ggc:0.079 ggg:0.002 ggt:0.007 gta:0.001 gtc:0.059 gtg:0.021 gtt:0.000 taa:0.000 tac:0.026 tag:0.000 tat:0.000 tca:0.000 tcc:0.029 tcg:0.013 tct:0.000 tga:0.000 tgc:0.007 tgg:0.011 tgt:0.000 tta:0.000 ttc:0.032 ttg:0.000 ttt:0.000 CodonUsageIt8 sphere 6.62471E-5 0.03040742 0.049652204 3.312355E-5 1.6561775E-4 0.04663796 0.013547532 5.299768E-4 3.312355E-5 0.007684664 6.955946E-4 0.0 9.937065E-5 0.0457105 0.019277906 3.312355E-5 3.312355E-5 0.020337861 0.032063596 6.62471E-5 3.312355E-5 0.018549189 0.02928122 9.937065E-5 2.3186486E-4 0.042563763 0.008479629 0.001921166 3.312355E-5 0.035409074 0.050546538 3.6435906E-4 0.0027492547 0.06760517 0.06873137 9.937065E-5 0.0011593243 0.08357072 0.031765487 9.937065E-4 0.0011593243 0.07906592 0.0020867838 0.0067572044 5.631004E-4 0.059026167 0.020536602 2.649884E-4 0.0 0.026366346 0.0 1.6561775E-4 0.0 0.02928122 0.012520703 2.3186486E-4 0.0 0.007287181 0.010930772 1.6561775E-4 0.0 0.032063596 2.3186486E-4 3.312355E-5 0.2 0 255 0 Iteration 9 First 79 genes (1%) aaa:0.000 aac:0.030 aag:0.050 aat:0.000 aca:0.000 acc:0.046 acg:0.014 act:0.001 aga:0.000 agc:0.007 agg:0.001 agt:0.000 ata:0.000 atc:0.047 atg:0.020 att:0.000 caa:0.000 cac:0.020 cag:0.032 cat:0.000 cca:0.000 ccc:0.018 ccg:0.030 cct:0.000 cga:0.000 cgc:0.042 cgg:0.008 cgt:0.002 cta:0.000 ctc:0.036 ctg:0.052 ctt:0.000 gaa:0.003 gac:0.067 gag:0.068 gat:0.000 gca:0.001 gcc:0.084 gcg:0.033 gct:0.001 gga:0.001 ggc:0.078 ggg:0.002 ggt:0.007 gta:0.001 gtc:0.059 gtg:0.021 gtt:0.000 taa:0.000 tac:0.026 tag:0.000 tat:0.000 tca:0.000 tcc:0.029 tcg:0.013 tct:0.000 tga:0.000 tgc:0.007 tgg:0.011 tgt:0.000 tta:0.000 ttc:0.033 ttg:0.000 ttt:0.000 CodonUsageIt9 sphere 6.633059E-5 0.030346246 0.04978111 3.3165295E-5 1.3266118E-4 0.045867603 0.013763598 5.306447E-4 6.633059E-5 0.0071305386 6.633059E-4 9.949589E-5 9.949589E-5 0.04686256 0.019567525 6.633059E-5 3.3165295E-5 0.020164499 0.031606525 6.633059E-5 0.0 0.01754444 0.029517114 9.949589E-5 2.3215706E-4 0.042219423 0.00845715 0.0018572565 3.3165295E-5 0.036083844 0.051704697 3.3165296E-4 0.0025205624 0.067093395 0.06832051 9.949589E-5 0.0011939507 0.08367604 0.032601487 9.949589E-4 0.0010281241 0.07830326 0.0021889096 0.006832051 5.6381006E-4 0.05880207 0.020529319 2.9848766E-4 0.0 0.02623375 0.0 1.6582648E-4 0.0 0.029085964 0.012801805 2.3215706E-4 0.0 0.0073958607 0.011044043 1.6582648E-4 0.0 0.03256832 1.9899178E-4 3.3165295E-5 0.2 0 255 0 Iteration 10 First 79 genes (1%) aaa:0.000 aac:0.031 aag:0.050 aat:0.000 aca:0.000 acc:0.046 acg:0.014 act:0.001 aga:0.000 agc:0.007 agg:0.001 agt:0.000 ata:0.000 atc:0.046 atg:0.020 att:0.000 caa:0.000 cac:0.020 cag:0.032 cat:0.000 cca:0.000 ccc:0.018 ccg:0.030 cct:0.000 cga:0.000 cgc:0.043 cgg:0.008 cgt:0.002 cta:0.000 ctc:0.036 ctg:0.051 ctt:0.000 gaa:0.003 gac:0.068 gag:0.069 gat:0.000 gca:0.001 gcc:0.083 gcg:0.032 gct:0.001 gga:0.001 ggc:0.078 ggg:0.002 ggt:0.007 gta:0.001 gtc:0.059 gtg:0.021 gtt:0.000 taa:0.000 tac:0.026 tag:0.000 tat:0.000 tca:0.000 tcc:0.029 tcg:0.013 tct:0.000 tga:0.000 tgc:0.008 tgg:0.011 tgt:0.000 tta:0.000 ttc:0.032 ttg:0.000 ttt:0.000 CodonUsageIt10 sphere 6.658233E-5 0.030794328 0.049770292 3.3291166E-5 1.3316466E-4 0.045642186 0.01371596 5.6594977E-4 6.658233E-5 0.0069911447 6.325321E-4 3.3291166E-5 1.3316466E-4 0.0463413 0.019508623 3.3291166E-5 3.3291166E-5 0.0203409 0.03225914 6.658233E-5 3.3291166E-5 0.017977228 0.029629136 9.987349E-5 2.3303815E-4 0.042712566 0.0082895 0.0019641786 3.3291166E-5 0.03552167 0.051101938 3.6620282E-4 0.0025634198 0.067814104 0.068746254 1.3316466E-4 0.0011318995 0.083094746 0.032125972 9.98735E-4 0.0010320261 0.07833411 0.0020640523 0.006957853 5.6594977E-4 0.05862574 0.020806978 2.6632933E-4 0.0 0.025900526 0.0 1.6645582E-4 0.0 0.029096479 0.012783807 2.3303815E-4 0.0 0.0076236767 0.010919502 1.6645582E-4 0.0 0.032458887 2.3303815E-4 3.3291166E-5 0.2 0 255 0 Iteration 11 First 79 genes (1%) aaa:0.000 aac:0.031 aag:0.050 aat:0.000 aca:0.000 acc:0.046 acg:0.014 act:0.001 aga:0.000 agc:0.007 agg:0.001 agt:0.000 ata:0.000 atc:0.047 atg:0.020 att:0.000 caa:0.000 cac:0.020 cag:0.032 cat:0.000 cca:0.000 ccc:0.018 ccg:0.030 cct:0.000 cga:0.000 cgc:0.042 cgg:0.008 cgt:0.002 cta:0.000 ctc:0.035 ctg:0.051 ctt:0.000 gaa:0.003 gac:0.068 gag:0.069 gat:0.000 gca:0.001 gcc:0.082 gcg:0.032 gct:0.001 gga:0.001 ggc:0.078 ggg:0.002 ggt:0.007 gta:0.001 gtc:0.059 gtg:0.021 gtt:0.000 taa:0.000 tac:0.026 tag:0.000 tat:0.000 tca:0.000 tcc:0.029 tcg:0.013 tct:0.000 tga:0.000 tgc:0.008 tgg:0.011 tgt:0.000 tta:0.000 ttc:0.032 ttg:0.000 ttt:0.000 CodonUsageIt11 sphere 6.6985966E-5 0.030579094 0.050339952 3.3492983E-5 1.3397193E-4 0.045617443 0.013933081 5.693807E-4 3.3492983E-5 0.0071340054 6.6985964E-4 0.0 1.6746491E-4 0.046555247 0.019559903 3.3492983E-5 3.3492983E-5 0.020464214 0.03168436 6.6985966E-5 0.0 0.018052718 0.02964129 1.0047895E-4 2.3445088E-4 0.042368624 0.008205781 0.002009579 3.3492983E-5 0.035201125 0.05131125 3.6842283E-4 0.0025119737 0.067521855 0.0691965 1.3397193E-4 0.0011722544 0.08239274 0.03242121 0.0010047895 9.712965E-4 0.07830659 0.002076565 0.0068325684 5.693807E-4 0.05884717 0.020966608 2.6794386E-4 0.0 0.025923569 0.0 1.6746491E-4 0.0 0.02930636 0.012760826 2.3445088E-4 0.0 0.007736879 0.010851727 1.6746491E-4 0.0 0.032220248 2.009579E-4 3.3492983E-5 0.2 0 255 0 Iteration 12 First 79 genes (1%) aaa:0.000 aac:0.031 aag:0.049 aat:0.000 aca:0.000 acc:0.045 acg:0.014 act:0.001 aga:0.000 agc:0.007 agg:0.001 agt:0.000 ata:0.000 atc:0.047 atg:0.020 att:0.000 caa:0.000 cac:0.020 cag:0.032 cat:0.000 cca:0.000 ccc:0.018 ccg:0.030 cct:0.000 cga:0.000 cgc:0.043 cgg:0.008 cgt:0.002 cta:0.000 ctc:0.036 ctg:0.052 ctt:0.000 gaa:0.003 gac:0.067 gag:0.068 gat:0.000 gca:0.001 gcc:0.083 gcg:0.033 gct:0.001 gga:0.001 ggc:0.079 ggg:0.002 ggt:0.007 gta:0.001 gtc:0.059 gtg:0.021 gtt:0.000 taa:0.000 tac:0.026 tag:0.000 tat:0.000 tca:0.000 tcc:0.029 tcg:0.013 tct:0.000 tga:0.000 tgc:0.007 tgg:0.011 tgt:0.000 tta:0.000 ttc:0.033 ttg:0.000 ttt:0.000 CodonUsageIt12 sphere 6.549432E-5 0.030684087 0.049349967 3.274716E-5 1.3098864E-4 0.045453057 0.0138193015 5.239546E-4 6.549432E-5 0.006975145 6.549432E-4 9.824148E-5 1.3098864E-4 0.04692668 0.0195828 6.549432E-5 3.274716E-5 0.020008514 0.03192848 6.549432E-5 3.274716E-5 0.017683465 0.02950519 9.824148E-5 2.2923012E-4 0.04280054 0.008219537 0.0018993352 3.274716E-5 0.03595638 0.051675018 3.6021875E-4 0.0025215312 0.067066185 0.06801585 1.3098864E-4 0.0011461505 0.083407015 0.03271441 9.824148E-4 0.0010479091 0.07859318 0.0021613126 0.0068114093 5.567017E-4 0.058617417 0.020597963 2.9472442E-4 0.0 0.02616498 0.0 1.637358E-4 0.0 0.029243214 0.012935128 2.2923012E-4 0.0 0.0073681106 0.01106854 1.637358E-4 0.0 0.032648917 2.2923012E-4 3.274716E-5 0.2 0 255 0 Iteration 13 First 79 genes (1%) aaa:0.000 aac:0.031 aag:0.051 aat:0.000 aca:0.000 acc:0.046 acg:0.014 act:0.001 aga:0.000 agc:0.007 agg:0.001 agt:0.000 ata:0.000 atc:0.047 atg:0.020 att:0.000 caa:0.000 cac:0.020 cag:0.032 cat:0.000 cca:0.000 ccc:0.018 ccg:0.030 cct:0.000 cga:0.000 cgc:0.042 cgg:0.008 cgt:0.002 cta:0.000 ctc:0.035 ctg:0.051 ctt:0.000 gaa:0.003 gac:0.068 gag:0.069 gat:0.000 gca:0.001 gcc:0.083 gcg:0.032 gct:0.001 gga:0.001 ggc:0.078 ggg:0.002 ggt:0.007 gta:0.001 gtc:0.059 gtg:0.021 gtt:0.000 taa:0.000 tac:0.026 tag:0.000 tat:0.000 tca:0.000 tcc:0.029 tcg:0.013 tct:0.000 tga:0.000 tgc:0.008 tgg:0.011 tgt:0.000 tta:0.000 ttc:0.032 ttg:0.000 ttt:0.000 CodonUsageIt13 sphere 6.644077E-5 0.030728856 0.050594646 3.3220385E-5 1.3288154E-4 0.045545146 0.01391934 5.647465E-4 6.644077E-5 0.0071423827 6.644077E-4 3.3220385E-5 1.6610192E-4 0.04664142 0.019666467 3.3220385E-5 3.3220385E-5 0.020164773 0.03212411 6.644077E-5 0.0 0.017872566 0.029566143 9.966115E-5 2.3254269E-4 0.042090226 0.008072553 0.001993223 3.3220385E-5 0.03528005 0.051225834 3.6542423E-4 0.0025247491 0.06766992 0.06886586 1.3288154E-4 0.0011627134 0.082751974 0.032423094 9.966115E-4 9.966115E-4 0.07843333 0.0021261047 0.00690984 5.647465E-4 0.0588333 0.02076274 2.6576308E-4 0.0 0.025878679 0.0 1.6610192E-4 0.0 0.029233938 0.012756627 2.3254269E-4 0.0 0.00777357 0.010796625 1.6610192E-4 0.0 0.03212411 1.993223E-4 3.3220385E-5 0.2 0 255 0 Iteration 14 First 79 genes (1%) aaa:0.000 aac:0.031 aag:0.050 aat:0.000 aca:0.000 acc:0.046 acg:0.014 act:0.001 aga:0.000 agc:0.007 agg:0.001 agt:0.000 ata:0.000 atc:0.046 atg:0.019 att:0.000 caa:0.000 cac:0.020 cag:0.032 cat:0.000 cca:0.000 ccc:0.018 ccg:0.030 cct:0.000 cga:0.000 cgc:0.043 cgg:0.008 cgt:0.002 cta:0.000 ctc:0.035 ctg:0.051 ctt:0.000 gaa:0.003 gac:0.068 gag:0.069 gat:0.000 gca:0.001 gcc:0.082 gcg:0.033 gct:0.001 gga:0.001 ggc:0.079 ggg:0.002 ggt:0.007 gta:0.001 gtc:0.059 gtg:0.021 gtt:0.000 taa:0.000 tac:0.026 tag:0.000 tat:0.000 tca:0.000 tcc:0.029 tcg:0.013 tct:0.000 tga:0.000 tgc:0.008 tgg:0.011 tgt:0.000 tta:0.000 ttc:0.032 ttg:0.000 ttt:0.000 CodonUsageIt14 sphere 6.637682E-5 0.030632904 0.050014935 3.318841E-5 1.3275364E-4 0.045634065 0.013872756 5.6420296E-4 3.318841E-5 0.0070691314 6.637682E-4 0.0 1.6594205E-4 0.04636421 0.019448409 3.318841E-5 3.318841E-5 0.020377684 0.03192725 6.637682E-5 3.318841E-5 0.018120872 0.029570874 9.956523E-5 2.3231887E-4 0.042713486 0.008164349 0.0019913046 3.318841E-5 0.035146527 0.051242907 3.9826092E-4 0.0025555077 0.067505226 0.06913146 1.3275364E-4 0.0011615944 0.082373634 0.03252464 9.956523E-4 9.956523E-4 0.078590155 0.0020576816 0.0068368125 5.6420296E-4 0.058809865 0.020941887 2.655073E-4 0.0 0.025853772 0.0 1.6594205E-4 0.0 0.029305367 0.012777538 2.3231887E-4 0.0 0.0076665226 0.010985364 1.6594205E-4 0.0 0.032259136 2.3231887E-4 3.318841E-5 0.2 0 255 0 aaa:0.001 aac:1.000 aag:1.000 aat:0.001 aca:0.003 acc:1.000 acg:0.304 act:0.012 aga:0.001 agc:0.241 agg:0.016 agt:0.000 ata:0.004 atc:1.000 atg:1.000 att:0.001 caa:0.001 cac:1.000 cag:1.000 cat:0.003 cca:0.001 ccc:0.613 ccg:1.000 cct:0.003 cga:0.005 cgc:1.000 cgg:0.191 cgt:0.047 cta:0.001 ctc:0.686 ctg:1.000 ctt:0.008 gaa:0.037 gac:1.000 gag:1.000 gat:0.002 gca:0.014 gcc:1.000 gcg:0.395 gct:0.012 gga:0.013 ggc:1.000 ggg:0.026 ggt:0.087 gta:0.010 gtc:1.000 gtg:0.356 gtt:0.005 taa:0.000 tac:1.000 tag:0.000 tat:0.006 tca:0.000 tcc:1.000 tcg:0.436 tct:0.008 tga:0.000 tgc:1.000 tgg:1.000 tgt:0.022 tta:0.000 ttc:1.000 ttg:0.005 ttt:0.001 ttt:0.001 ttc:1.000 ttg:0.005 tta:0.000 tct:0.008 tcc:1.000 tcg:0.436 tca:0.000 tgt:0.022 tgc:1.000 tgg:1.000 tga:0.000 tat:0.006 tac:1.000 tag:0.000 taa:0.000 ctt:0.008 ctc:0.686 ctg:1.000 cta:0.001 cct:0.003 ccc:0.613 ccg:1.000 cca:0.001 cgt:0.047 cgc:1.000 cgg:0.191 cga:0.005 cat:0.003 cac:1.000 cag:1.000 caa:0.001 gtt:0.005 gtc:1.000 gtg:0.356 gta:0.010 gct:0.012 gcc:1.000 gcg:0.395 gca:0.014 ggt:0.087 ggc:1.000 ggg:0.026 gga:0.013 gat:0.002 gac:1.000 gag:1.000 gaa:0.037 att:0.001 atc:1.000 atg:1.000 ata:0.004 act:0.012 acc:1.000 acg:0.304 aca:0.003 agt:0.000 agc:0.241 agg:0.016 aga:0.001 aat:0.001 aac:1.000 aag:1.000 aaa:0.001 // 0 - CAICLASS // 1 - STRAND // 2 - GC_CONT // 3 - GC_CONT3 // 4 - GC_SKEW // 5 - AT_SKEW // 6 - GENELENGTH // 7 - CAIEXT --- 0.01044132 0.20214632 0.8865995 -0.35837144 0.1338047 0.21872233 NaN