AdditionalInfoFile = "" ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 ttt:0.000 ttc:0.000 ttg:0.000 tta:0.000 tct:0.000 tcc:0.000 tcg:0.000 tca:0.000 tgt:0.000 tgc:0.000 tgg:0.000 tga:0.000 tat:0.000 tac:0.000 tag:0.000 taa:0.000 ctt:0.000 ctc:0.000 ctg:0.000 cta:0.000 cct:0.000 ccc:0.000 ccg:0.000 cca:0.000 cgt:0.000 cgc:0.000 cgg:0.000 cga:0.000 cat:0.000 cac:0.000 cag:0.000 caa:0.000 gtt:0.000 gtc:0.000 gtg:0.000 gta:0.000 gct:0.000 gcc:0.000 gcg:0.000 gca:0.000 ggt:0.000 ggc:0.000 ggg:0.000 gga:0.000 gat:0.000 gac:0.000 gag:0.000 gaa:0.000 att:0.000 atc:0.000 atg:0.000 ata:0.000 act:0.000 acc:0.000 acg:0.000 aca:0.000 agt:0.000 agc:0.000 agg:0.000 aga:0.000 aat:0.000 aac:0.000 aag:0.000 aaa:0.000 Looking for randomclass.txt... Loading sequence... Loaded... Getting seq... Got NC_002689 1499 CDS features found CodonUsage sphere 0.0337544 0.02153901 0.035200287 0.025729626 0.017034264 0.007993584 0.008699818 0.014365281 0.016898364 0.01254957 0.020511964 0.0076660872 0.055955086 0.014487813 0.02444192 0.021416478 0.008292118 0.0067816246 0.012667647 0.008416878 0.014583612 0.0040480327 0.0074054273 0.011878982 0.002247917 0.00243283 0.0018424453 0.0031502028 0.013053068 0.012589672 0.01175645 0.025250634 0.04054939 0.017963285 0.02348171 0.037120707 0.023840396 0.013168917 0.007928976 0.019239852 0.022606159 0.01940917 0.011159382 0.017092189 0.025255091 0.0105133 0.011865615 0.02415898 6.906385E-5 0.022129394 8.243105E-5 0.025393218 0.018633872 0.01035735 0.008938199 0.017161254 6.0152386E-5 0.0039722854 0.00845698 0.0021209286 0.01352092 0.022109345 0.0115581695 0.025442231 0.4 255 0 0 aaa:0.034 aac:0.022 aag:0.035 aat:0.026 aca:0.017 acc:0.008 acg:0.009 act:0.014 aga:0.017 agc:0.013 agg:0.021 agt:0.008 ata:0.056 atc:0.014 atg:0.024 att:0.021 caa:0.008 cac:0.007 cag:0.013 cat:0.008 cca:0.015 ccc:0.004 ccg:0.007 cct:0.012 cga:0.002 cgc:0.002 cgg:0.002 cgt:0.003 cta:0.013 ctc:0.013 ctg:0.012 ctt:0.025 gaa:0.041 gac:0.018 gag:0.023 gat:0.037 gca:0.024 gcc:0.013 gcg:0.008 gct:0.019 gga:0.023 ggc:0.019 ggg:0.011 ggt:0.017 gta:0.025 gtc:0.011 gtg:0.012 gtt:0.024 taa:0.000 tac:0.022 tag:0.000 tat:0.025 tca:0.019 tcc:0.010 tcg:0.009 tct:0.017 tga:0.000 tgc:0.004 tgg:0.008 tgt:0.002 tta:0.014 ttc:0.022 ttg:0.012 ttt:0.025 Number of points = 1499 Iteration 0 First 749 genes (50%) aaa:0.037 aac:0.023 aag:0.037 aat:0.028 aca:0.018 acc:0.007 acg:0.008 act:0.015 aga:0.017 agc:0.012 agg:0.021 agt:0.007 ata:0.057 atc:0.012 atg:0.024 att:0.019 caa:0.008 cac:0.007 cag:0.013 cat:0.009 cca:0.016 ccc:0.003 ccg:0.007 cct:0.012 cga:0.002 cgc:0.002 cgg:0.001 cgt:0.002 cta:0.012 ctc:0.011 ctg:0.010 ctt:0.025 gaa:0.044 gac:0.018 gag:0.023 gat:0.040 gca:0.024 gcc:0.012 gcg:0.007 gct:0.019 gga:0.024 ggc:0.019 ggg:0.011 ggt:0.017 gta:0.026 gtc:0.010 gtg:0.011 gtt:0.025 taa:0.000 tac:0.023 tag:0.000 tat:0.026 tca:0.019 tcc:0.009 tcg:0.008 tct:0.016 tga:0.000 tgc:0.004 tgg:0.009 tgt:0.002 tta:0.013 ttc:0.021 ttg:0.010 ttt:0.024 CodonUsageIt0 sphere 0.037058543 0.022725513 0.03741128 0.027831549 0.018058244 0.00749344 0.008327956 0.014771799 0.016827978 0.012233837 0.020970447 0.0071062935 0.056854647 0.011618704 0.02440745 0.019142255 0.008444101 0.006908418 0.013266228 0.008702198 0.015700951 0.003467114 0.007269755 0.01245322 0.0015485869 0.0017894782 0.0012947908 0.0024261195 0.012078978 0.010939046 0.010220674 0.024712866 0.043923948 0.017744225 0.023301931 0.040228847 0.024385942 0.012448918 0.00730847 0.01910354 0.024041811 0.019374544 0.010672345 0.017473223 0.026132405 0.009678668 0.010564804 0.024575215 4.3016303E-6 0.022897579 4.3016303E-6 0.02609369 0.01860025 0.009270013 0.007936508 0.01641072 8.6032605E-6 0.0044736955 0.0086118635 0.0021207037 0.012861875 0.021039274 0.0101475455 0.024497785 0.2 0 255 0 Iteration 1 First 374 genes (25%) aaa:0.042 aac:0.022 aag:0.040 aat:0.031 aca:0.018 acc:0.006 acg:0.007 act:0.014 aga:0.018 agc:0.012 agg:0.021 agt:0.007 ata:0.058 atc:0.010 atg:0.024 att:0.020 caa:0.009 cac:0.007 cag:0.013 cat:0.009 cca:0.015 ccc:0.003 ccg:0.006 cct:0.012 cga:0.001 cgc:0.001 cgg:0.001 cgt:0.002 cta:0.011 ctc:0.010 ctg:0.009 ctt:0.024 gaa:0.049 gac:0.018 gag:0.023 gat:0.044 gca:0.025 gcc:0.011 gcg:0.007 gct:0.019 gga:0.024 ggc:0.019 ggg:0.010 ggt:0.017 gta:0.026 gtc:0.009 gtg:0.010 gtt:0.025 taa:0.000 tac:0.021 tag:0.000 tat:0.026 tca:0.019 tcc:0.009 tcg:0.007 tct:0.016 tga:0.000 tgc:0.004 tgg:0.008 tgt:0.002 tta:0.014 ttc:0.020 ttg:0.009 ttt:0.025 CodonUsageIt1 sphere 0.041903574 0.022386003 0.039729286 0.030623807 0.018415116 0.0063799596 0.007410961 0.0144544365 0.017802639 0.011606423 0.02100793 0.0070843073 0.058175024 0.010422302 0.024407174 0.019507365 0.008544042 0.006951604 0.012576177 0.008513418 0.015444607 0.003021549 0.0064309994 0.012198483 0.001102457 0.0014393189 8.880904E-4 0.0018578443 0.011014363 0.009983361 0.008819656 0.02428468 0.048671436 0.017690353 0.022855569 0.043587886 0.025040066 0.0114941355 0.0065841186 0.019027593 0.023927402 0.018660106 0.01013648 0.017047253 0.025856702 0.008768617 0.010146688 0.0254688 0.0 0.021446873 0.0 0.02640793 0.019160295 0.008635914 0.006880149 0.015516062 0.0 0.004430244 0.008237804 0.0019905474 0.014005288 0.019619653 0.009381093 0.024937987 0.2 0 255 0 Iteration 2 First 179 genes (12%) aaa:0.050 aac:0.022 aag:0.041 aat:0.035 aca:0.018 acc:0.005 acg:0.007 act:0.013 aga:0.019 agc:0.011 agg:0.020 agt:0.007 ata:0.059 atc:0.010 atg:0.023 att:0.022 caa:0.009 cac:0.007 cag:0.012 cat:0.009 cca:0.015 ccc:0.002 ccg:0.006 cct:0.011 cga:0.001 cgc:0.001 cgg:0.001 cgt:0.001 cta:0.010 ctc:0.009 ctg:0.008 ctt:0.024 gaa:0.052 gac:0.016 gag:0.022 gat:0.047 gca:0.023 gcc:0.010 gcg:0.006 gct:0.018 gga:0.025 ggc:0.017 ggg:0.009 ggt:0.017 gta:0.026 gtc:0.008 gtg:0.009 gtt:0.026 taa:0.000 tac:0.019 tag:0.000 tat:0.029 tca:0.019 tcc:0.008 tcg:0.005 tct:0.014 tga:0.000 tgc:0.005 tgg:0.008 tgt:0.002 tta:0.018 ttc:0.018 ttg:0.010 ttt:0.027 CodonUsageIt2 sphere 0.049618598 0.02152803 0.041142996 0.03547645 0.018283086 0.0051580095 0.006659402 0.01322194 0.018525245 0.010582395 0.02019615 0.007071074 0.059280783 0.009541106 0.023198934 0.021576462 0.0090083545 0.006659402 0.011890059 0.0086451145 0.015207652 0.0024458168 0.0056907614 0.0114541715 7.991282E-4 9.928562E-4 6.054002E-4 0.0014771764 0.010122291 0.008741979 0.007918634 0.024046496 0.051894903 0.016394237 0.021552246 0.04685797 0.023368446 0.010388667 0.0057149776 0.0183073 0.024579247 0.016926989 0.009468459 0.01680591 0.025983775 0.007967066 0.009202083 0.02583848 0.0 0.019445453 0.0 0.028647536 0.019275941 0.007506962 0.0054728175 0.014093716 0.0 0.0048432015 0.00770069 0.0023731687 0.017677685 0.018379949 0.009589539 0.026976632 0.2 0 255 0 Iteration 3 First 89 genes (6%) aaa:0.060 aac:0.021 aag:0.035 aat:0.048 aca:0.019 acc:0.004 acg:0.005 act:0.013 aga:0.021 agc:0.010 agg:0.017 agt:0.008 ata:0.060 atc:0.009 atg:0.020 att:0.028 caa:0.010 cac:0.006 cag:0.009 cat:0.009 cca:0.014 ccc:0.002 ccg:0.005 cct:0.010 cga:0.001 cgc:0.001 cgg:0.000 cgt:0.001 cta:0.010 ctc:0.007 ctg:0.006 ctt:0.023 gaa:0.054 gac:0.014 gag:0.019 gat:0.048 gca:0.022 gcc:0.008 gcg:0.004 gct:0.016 gga:0.023 ggc:0.014 ggg:0.007 ggt:0.016 gta:0.025 gtc:0.005 gtg:0.007 gtt:0.023 taa:0.000 tac:0.018 tag:0.000 tat:0.034 tca:0.020 tcc:0.007 tcg:0.005 tct:0.015 tga:0.000 tgc:0.005 tgg:0.008 tgt:0.003 tta:0.025 ttc:0.016 ttg:0.011 ttt:0.033 CodonUsageIt3 sphere 0.059979048 0.021320064 0.03462546 0.04772132 0.018858042 0.004452593 0.0051335776 0.012676794 0.021058146 0.0100052385 0.017391304 0.008067051 0.060136195 0.009062337 0.020115243 0.02750131 0.00958617 0.006443164 0.009324254 0.009167103 0.014300681 0.0023572552 0.004924044 0.010162389 5.238345E-4 5.238345E-4 4.7145103E-4 0.001414353 0.010214772 0.006809848 0.0064955475 0.022682032 0.0541121 0.01382923 0.018805657 0.04834992 0.022472499 0.008171817 0.0040335255 0.015715035 0.023205867 0.01414353 0.007490833 0.015715035 0.025301205 0.005028811 0.007490833 0.023363017 0.0 0.01838659 0.0 0.03357779 0.02022001 0.0067574647 0.0047145104 0.014719749 0.0 0.0045049763 0.008328968 0.0029858565 0.025144054 0.015872184 0.011314824 0.032739654 0.2 0 255 0 Iteration 4 First 44 genes (3%) aaa:0.072 aac:0.020 aag:0.027 aat:0.061 aca:0.020 acc:0.004 acg:0.004 act:0.012 aga:0.021 agc:0.009 agg:0.014 agt:0.010 ata:0.065 atc:0.009 atg:0.017 att:0.033 caa:0.012 cac:0.005 cag:0.008 cat:0.010 cca:0.014 ccc:0.003 ccg:0.004 cct:0.009 cga:0.001 cgc:0.000 cgg:0.001 cgt:0.001 cta:0.009 ctc:0.004 ctg:0.004 ctt:0.018 gaa:0.052 gac:0.012 gag:0.015 gat:0.053 gca:0.020 gcc:0.007 gcg:0.003 gct:0.014 gga:0.021 ggc:0.012 ggg:0.006 ggt:0.016 gta:0.022 gtc:0.004 gtg:0.006 gtt:0.021 taa:0.000 tac:0.017 tag:0.000 tat:0.041 tca:0.022 tcc:0.006 tcg:0.005 tct:0.014 tga:0.000 tgc:0.003 tgg:0.008 tgt:0.004 tta:0.035 ttc:0.013 ttg:0.014 ttt:0.036 CodonUsageIt4 sphere 0.07249054 0.019882115 0.026568135 0.060790006 0.019882115 0.00422275 0.0036069322 0.011788511 0.02111375 0.008533474 0.013899886 0.010029031 0.064924784 0.0094132135 0.017418845 0.03316618 0.011524589 0.0052784374 0.0077417083 0.009941057 0.013811911 0.0026392187 0.004398698 0.00932524 7.9176563E-4 4.398698E-4 7.037917E-4 0.0014955574 0.008973344 0.004046802 0.004398698 0.01821061 0.052256532 0.011612562 0.014603677 0.052608427 0.020321984 0.006510073 0.0028151667 0.013811911 0.02067388 0.011876484 0.006334125 0.015747339 0.022169437 0.0039588283 0.0056303334 0.020937802 0.0 0.016539104 0.0 0.04117181 0.021905515 0.005806281 0.0050145155 0.014163808 0.0 0.0029031406 0.00800563 0.0039588283 0.034573767 0.013020146 0.013899886 0.035717428 0.2 0 255 0 Iteration 5 First 14 genes (1%) aaa:0.080 aac:0.018 aag:0.022 aat:0.072 aca:0.022 acc:0.005 acg:0.003 act:0.012 aga:0.022 agc:0.006 agg:0.014 agt:0.012 ata:0.063 atc:0.009 atg:0.017 att:0.039 caa:0.007 cac:0.005 cag:0.006 cat:0.012 cca:0.009 ccc:0.002 ccg:0.003 cct:0.007 cga:0.000 cgc:0.001 cgg:0.000 cgt:0.001 cta:0.007 ctc:0.001 ctg:0.003 ctt:0.014 gaa:0.050 gac:0.010 gag:0.013 gat:0.059 gca:0.023 gcc:0.005 gcg:0.004 gct:0.013 gga:0.017 ggc:0.010 ggg:0.005 ggt:0.015 gta:0.019 gtc:0.002 gtg:0.003 gtt:0.018 taa:0.000 tac:0.015 tag:0.000 tat:0.048 tca:0.023 tcc:0.006 tcg:0.004 tct:0.013 tga:0.000 tgc:0.002 tgg:0.007 tgt:0.006 tta:0.044 ttc:0.012 ttg:0.016 ttt:0.046 CodonUsageIt5 sphere 0.0796949 0.017885324 0.022093635 0.072330356 0.022093635 0.00499737 0.003419253 0.011835876 0.021567596 0.005786428 0.013677012 0.012361915 0.06259863 0.008942662 0.017096264 0.039452918 0.006838506 0.00499737 0.006312467 0.011835876 0.008942662 0.0018411363 0.002893214 0.007364545 2.6301946E-4 5.2603893E-4 2.6301946E-4 0.0010520779 0.0071015256 0.0010520779 0.0026301946 0.013940032 0.04971068 0.010257759 0.013150973 0.05865334 0.022619674 0.0047343504 0.0036822725 0.013413993 0.016570225 0.00999474 0.0047343504 0.01472909 0.01946344 0.0021041557 0.003419253 0.018148342 0.0 0.01472909 0.0 0.04786954 0.022619674 0.006312467 0.003945292 0.013150973 0.0 0.0021041557 0.007364545 0.005786428 0.04392425 0.011572856 0.015781168 0.045765385 0.2 0 255 0 Iteration 6 First 14 genes (1%) aaa:0.080 aac:0.018 aag:0.022 aat:0.072 aca:0.022 acc:0.005 acg:0.003 act:0.012 aga:0.022 agc:0.006 agg:0.014 agt:0.012 ata:0.063 atc:0.009 atg:0.017 att:0.039 caa:0.007 cac:0.005 cag:0.006 cat:0.012 cca:0.009 ccc:0.002 ccg:0.003 cct:0.007 cga:0.000 cgc:0.001 cgg:0.000 cgt:0.001 cta:0.007 ctc:0.001 ctg:0.003 ctt:0.014 gaa:0.050 gac:0.010 gag:0.013 gat:0.059 gca:0.023 gcc:0.005 gcg:0.004 gct:0.013 gga:0.017 ggc:0.010 ggg:0.005 ggt:0.015 gta:0.019 gtc:0.002 gtg:0.003 gtt:0.018 taa:0.000 tac:0.015 tag:0.000 tat:0.048 tca:0.023 tcc:0.006 tcg:0.004 tct:0.013 tga:0.000 tgc:0.002 tgg:0.007 tgt:0.006 tta:0.044 ttc:0.012 ttg:0.016 ttt:0.046 CodonUsageIt6 sphere 0.0796949 0.017885324 0.022093635 0.072330356 0.022093635 0.00499737 0.003419253 0.011835876 0.021567596 0.005786428 0.013677012 0.012361915 0.06259863 0.008942662 0.017096264 0.039452918 0.006838506 0.00499737 0.006312467 0.011835876 0.008942662 0.0018411363 0.002893214 0.007364545 2.6301946E-4 5.2603893E-4 2.6301946E-4 0.0010520779 0.0071015256 0.0010520779 0.0026301946 0.013940032 0.04971068 0.010257759 0.013150973 0.05865334 0.022619674 0.0047343504 0.0036822725 0.013413993 0.016570225 0.00999474 0.0047343504 0.01472909 0.01946344 0.0021041557 0.003419253 0.018148342 0.0 0.01472909 0.0 0.04786954 0.022619674 0.006312467 0.003945292 0.013150973 0.0 0.0021041557 0.007364545 0.005786428 0.04392425 0.011572856 0.015781168 0.045765385 0.2 0 255 0 Iteration 7 First 14 genes (1%) aaa:0.080 aac:0.018 aag:0.022 aat:0.072 aca:0.022 acc:0.005 acg:0.003 act:0.012 aga:0.022 agc:0.006 agg:0.014 agt:0.012 ata:0.063 atc:0.009 atg:0.017 att:0.039 caa:0.007 cac:0.005 cag:0.006 cat:0.012 cca:0.009 ccc:0.002 ccg:0.003 cct:0.007 cga:0.000 cgc:0.001 cgg:0.000 cgt:0.001 cta:0.007 ctc:0.001 ctg:0.003 ctt:0.014 gaa:0.050 gac:0.010 gag:0.013 gat:0.059 gca:0.023 gcc:0.005 gcg:0.004 gct:0.013 gga:0.017 ggc:0.010 ggg:0.005 ggt:0.015 gta:0.019 gtc:0.002 gtg:0.003 gtt:0.018 taa:0.000 tac:0.015 tag:0.000 tat:0.048 tca:0.023 tcc:0.006 tcg:0.004 tct:0.013 tga:0.000 tgc:0.002 tgg:0.007 tgt:0.006 tta:0.044 ttc:0.012 ttg:0.016 ttt:0.046 CodonUsageIt7 sphere 0.0796949 0.017885324 0.022093635 0.072330356 0.022093635 0.00499737 0.003419253 0.011835876 0.021567596 0.005786428 0.013677012 0.012361915 0.06259863 0.008942662 0.017096264 0.039452918 0.006838506 0.00499737 0.006312467 0.011835876 0.008942662 0.0018411363 0.002893214 0.007364545 2.6301946E-4 5.2603893E-4 2.6301946E-4 0.0010520779 0.0071015256 0.0010520779 0.0026301946 0.013940032 0.04971068 0.010257759 0.013150973 0.05865334 0.022619674 0.0047343504 0.0036822725 0.013413993 0.016570225 0.00999474 0.0047343504 0.01472909 0.01946344 0.0021041557 0.003419253 0.018148342 0.0 0.01472909 0.0 0.04786954 0.022619674 0.006312467 0.003945292 0.013150973 0.0 0.0021041557 0.007364545 0.005786428 0.04392425 0.011572856 0.015781168 0.045765385 0.2 0 255 0 Iteration 8 First 14 genes (1%) aaa:0.080 aac:0.018 aag:0.022 aat:0.072 aca:0.022 acc:0.005 acg:0.003 act:0.012 aga:0.022 agc:0.006 agg:0.014 agt:0.012 ata:0.063 atc:0.009 atg:0.017 att:0.039 caa:0.007 cac:0.005 cag:0.006 cat:0.012 cca:0.009 ccc:0.002 ccg:0.003 cct:0.007 cga:0.000 cgc:0.001 cgg:0.000 cgt:0.001 cta:0.007 ctc:0.001 ctg:0.003 ctt:0.014 gaa:0.050 gac:0.010 gag:0.013 gat:0.059 gca:0.023 gcc:0.005 gcg:0.004 gct:0.013 gga:0.017 ggc:0.010 ggg:0.005 ggt:0.015 gta:0.019 gtc:0.002 gtg:0.003 gtt:0.018 taa:0.000 tac:0.015 tag:0.000 tat:0.048 tca:0.023 tcc:0.006 tcg:0.004 tct:0.013 tga:0.000 tgc:0.002 tgg:0.007 tgt:0.006 tta:0.044 ttc:0.012 ttg:0.016 ttt:0.046 CodonUsageIt8 sphere 0.0796949 0.017885324 0.022093635 0.072330356 0.022093635 0.00499737 0.003419253 0.011835876 0.021567596 0.005786428 0.013677012 0.012361915 0.06259863 0.008942662 0.017096264 0.039452918 0.006838506 0.00499737 0.006312467 0.011835876 0.008942662 0.0018411363 0.002893214 0.007364545 2.6301946E-4 5.2603893E-4 2.6301946E-4 0.0010520779 0.0071015256 0.0010520779 0.0026301946 0.013940032 0.04971068 0.010257759 0.013150973 0.05865334 0.022619674 0.0047343504 0.0036822725 0.013413993 0.016570225 0.00999474 0.0047343504 0.01472909 0.01946344 0.0021041557 0.003419253 0.018148342 0.0 0.01472909 0.0 0.04786954 0.022619674 0.006312467 0.003945292 0.013150973 0.0 0.0021041557 0.007364545 0.005786428 0.04392425 0.011572856 0.015781168 0.045765385 0.2 0 255 0 Iteration 9 First 14 genes (1%) aaa:0.080 aac:0.018 aag:0.022 aat:0.072 aca:0.022 acc:0.005 acg:0.003 act:0.012 aga:0.022 agc:0.006 agg:0.014 agt:0.012 ata:0.063 atc:0.009 atg:0.017 att:0.039 caa:0.007 cac:0.005 cag:0.006 cat:0.012 cca:0.009 ccc:0.002 ccg:0.003 cct:0.007 cga:0.000 cgc:0.001 cgg:0.000 cgt:0.001 cta:0.007 ctc:0.001 ctg:0.003 ctt:0.014 gaa:0.050 gac:0.010 gag:0.013 gat:0.059 gca:0.023 gcc:0.005 gcg:0.004 gct:0.013 gga:0.017 ggc:0.010 ggg:0.005 ggt:0.015 gta:0.019 gtc:0.002 gtg:0.003 gtt:0.018 taa:0.000 tac:0.015 tag:0.000 tat:0.048 tca:0.023 tcc:0.006 tcg:0.004 tct:0.013 tga:0.000 tgc:0.002 tgg:0.007 tgt:0.006 tta:0.044 ttc:0.012 ttg:0.016 ttt:0.046 CodonUsageIt9 sphere 0.0796949 0.017885324 0.022093635 0.072330356 0.022093635 0.00499737 0.003419253 0.011835876 0.021567596 0.005786428 0.013677012 0.012361915 0.06259863 0.008942662 0.017096264 0.039452918 0.006838506 0.00499737 0.006312467 0.011835876 0.008942662 0.0018411363 0.002893214 0.007364545 2.6301946E-4 5.2603893E-4 2.6301946E-4 0.0010520779 0.0071015256 0.0010520779 0.0026301946 0.013940032 0.04971068 0.010257759 0.013150973 0.05865334 0.022619674 0.0047343504 0.0036822725 0.013413993 0.016570225 0.00999474 0.0047343504 0.01472909 0.01946344 0.0021041557 0.003419253 0.018148342 0.0 0.01472909 0.0 0.04786954 0.022619674 0.006312467 0.003945292 0.013150973 0.0 0.0021041557 0.007364545 0.005786428 0.04392425 0.011572856 0.015781168 0.045765385 0.2 0 255 0 Iteration 10 First 14 genes (1%) aaa:0.080 aac:0.018 aag:0.022 aat:0.072 aca:0.022 acc:0.005 acg:0.003 act:0.012 aga:0.022 agc:0.006 agg:0.014 agt:0.012 ata:0.063 atc:0.009 atg:0.017 att:0.039 caa:0.007 cac:0.005 cag:0.006 cat:0.012 cca:0.009 ccc:0.002 ccg:0.003 cct:0.007 cga:0.000 cgc:0.001 cgg:0.000 cgt:0.001 cta:0.007 ctc:0.001 ctg:0.003 ctt:0.014 gaa:0.050 gac:0.010 gag:0.013 gat:0.059 gca:0.023 gcc:0.005 gcg:0.004 gct:0.013 gga:0.017 ggc:0.010 ggg:0.005 ggt:0.015 gta:0.019 gtc:0.002 gtg:0.003 gtt:0.018 taa:0.000 tac:0.015 tag:0.000 tat:0.048 tca:0.023 tcc:0.006 tcg:0.004 tct:0.013 tga:0.000 tgc:0.002 tgg:0.007 tgt:0.006 tta:0.044 ttc:0.012 ttg:0.016 ttt:0.046 CodonUsageIt10 sphere 0.0796949 0.017885324 0.022093635 0.072330356 0.022093635 0.00499737 0.003419253 0.011835876 0.021567596 0.005786428 0.013677012 0.012361915 0.06259863 0.008942662 0.017096264 0.039452918 0.006838506 0.00499737 0.006312467 0.011835876 0.008942662 0.0018411363 0.002893214 0.007364545 2.6301946E-4 5.2603893E-4 2.6301946E-4 0.0010520779 0.0071015256 0.0010520779 0.0026301946 0.013940032 0.04971068 0.010257759 0.013150973 0.05865334 0.022619674 0.0047343504 0.0036822725 0.013413993 0.016570225 0.00999474 0.0047343504 0.01472909 0.01946344 0.0021041557 0.003419253 0.018148342 0.0 0.01472909 0.0 0.04786954 0.022619674 0.006312467 0.003945292 0.013150973 0.0 0.0021041557 0.007364545 0.005786428 0.04392425 0.011572856 0.015781168 0.045765385 0.2 0 255 0 Iteration 11 First 14 genes (1%) aaa:0.080 aac:0.018 aag:0.022 aat:0.072 aca:0.022 acc:0.005 acg:0.003 act:0.012 aga:0.022 agc:0.006 agg:0.014 agt:0.012 ata:0.063 atc:0.009 atg:0.017 att:0.039 caa:0.007 cac:0.005 cag:0.006 cat:0.012 cca:0.009 ccc:0.002 ccg:0.003 cct:0.007 cga:0.000 cgc:0.001 cgg:0.000 cgt:0.001 cta:0.007 ctc:0.001 ctg:0.003 ctt:0.014 gaa:0.050 gac:0.010 gag:0.013 gat:0.059 gca:0.023 gcc:0.005 gcg:0.004 gct:0.013 gga:0.017 ggc:0.010 ggg:0.005 ggt:0.015 gta:0.019 gtc:0.002 gtg:0.003 gtt:0.018 taa:0.000 tac:0.015 tag:0.000 tat:0.048 tca:0.023 tcc:0.006 tcg:0.004 tct:0.013 tga:0.000 tgc:0.002 tgg:0.007 tgt:0.006 tta:0.044 ttc:0.012 ttg:0.016 ttt:0.046 CodonUsageIt11 sphere 0.0796949 0.017885324 0.022093635 0.072330356 0.022093635 0.00499737 0.003419253 0.011835876 0.021567596 0.005786428 0.013677012 0.012361915 0.06259863 0.008942662 0.017096264 0.039452918 0.006838506 0.00499737 0.006312467 0.011835876 0.008942662 0.0018411363 0.002893214 0.007364545 2.6301946E-4 5.2603893E-4 2.6301946E-4 0.0010520779 0.0071015256 0.0010520779 0.0026301946 0.013940032 0.04971068 0.010257759 0.013150973 0.05865334 0.022619674 0.0047343504 0.0036822725 0.013413993 0.016570225 0.00999474 0.0047343504 0.01472909 0.01946344 0.0021041557 0.003419253 0.018148342 0.0 0.01472909 0.0 0.04786954 0.022619674 0.006312467 0.003945292 0.013150973 0.0 0.0021041557 0.007364545 0.005786428 0.04392425 0.011572856 0.015781168 0.045765385 0.2 0 255 0 Iteration 12 First 14 genes (1%) aaa:0.080 aac:0.018 aag:0.022 aat:0.072 aca:0.022 acc:0.005 acg:0.003 act:0.012 aga:0.022 agc:0.006 agg:0.014 agt:0.012 ata:0.063 atc:0.009 atg:0.017 att:0.039 caa:0.007 cac:0.005 cag:0.006 cat:0.012 cca:0.009 ccc:0.002 ccg:0.003 cct:0.007 cga:0.000 cgc:0.001 cgg:0.000 cgt:0.001 cta:0.007 ctc:0.001 ctg:0.003 ctt:0.014 gaa:0.050 gac:0.010 gag:0.013 gat:0.059 gca:0.023 gcc:0.005 gcg:0.004 gct:0.013 gga:0.017 ggc:0.010 ggg:0.005 ggt:0.015 gta:0.019 gtc:0.002 gtg:0.003 gtt:0.018 taa:0.000 tac:0.015 tag:0.000 tat:0.048 tca:0.023 tcc:0.006 tcg:0.004 tct:0.013 tga:0.000 tgc:0.002 tgg:0.007 tgt:0.006 tta:0.044 ttc:0.012 ttg:0.016 ttt:0.046 CodonUsageIt12 sphere 0.0796949 0.017885324 0.022093635 0.072330356 0.022093635 0.00499737 0.003419253 0.011835876 0.021567596 0.005786428 0.013677012 0.012361915 0.06259863 0.008942662 0.017096264 0.039452918 0.006838506 0.00499737 0.006312467 0.011835876 0.008942662 0.0018411363 0.002893214 0.007364545 2.6301946E-4 5.2603893E-4 2.6301946E-4 0.0010520779 0.0071015256 0.0010520779 0.0026301946 0.013940032 0.04971068 0.010257759 0.013150973 0.05865334 0.022619674 0.0047343504 0.0036822725 0.013413993 0.016570225 0.00999474 0.0047343504 0.01472909 0.01946344 0.0021041557 0.003419253 0.018148342 0.0 0.01472909 0.0 0.04786954 0.022619674 0.006312467 0.003945292 0.013150973 0.0 0.0021041557 0.007364545 0.005786428 0.04392425 0.011572856 0.015781168 0.045765385 0.2 0 255 0 Iteration 13 First 14 genes (1%) aaa:0.080 aac:0.018 aag:0.022 aat:0.072 aca:0.022 acc:0.005 acg:0.003 act:0.012 aga:0.022 agc:0.006 agg:0.014 agt:0.012 ata:0.063 atc:0.009 atg:0.017 att:0.039 caa:0.007 cac:0.005 cag:0.006 cat:0.012 cca:0.009 ccc:0.002 ccg:0.003 cct:0.007 cga:0.000 cgc:0.001 cgg:0.000 cgt:0.001 cta:0.007 ctc:0.001 ctg:0.003 ctt:0.014 gaa:0.050 gac:0.010 gag:0.013 gat:0.059 gca:0.023 gcc:0.005 gcg:0.004 gct:0.013 gga:0.017 ggc:0.010 ggg:0.005 ggt:0.015 gta:0.019 gtc:0.002 gtg:0.003 gtt:0.018 taa:0.000 tac:0.015 tag:0.000 tat:0.048 tca:0.023 tcc:0.006 tcg:0.004 tct:0.013 tga:0.000 tgc:0.002 tgg:0.007 tgt:0.006 tta:0.044 ttc:0.012 ttg:0.016 ttt:0.046 CodonUsageIt13 sphere 0.0796949 0.017885324 0.022093635 0.072330356 0.022093635 0.00499737 0.003419253 0.011835876 0.021567596 0.005786428 0.013677012 0.012361915 0.06259863 0.008942662 0.017096264 0.039452918 0.006838506 0.00499737 0.006312467 0.011835876 0.008942662 0.0018411363 0.002893214 0.007364545 2.6301946E-4 5.2603893E-4 2.6301946E-4 0.0010520779 0.0071015256 0.0010520779 0.0026301946 0.013940032 0.04971068 0.010257759 0.013150973 0.05865334 0.022619674 0.0047343504 0.0036822725 0.013413993 0.016570225 0.00999474 0.0047343504 0.01472909 0.01946344 0.0021041557 0.003419253 0.018148342 0.0 0.01472909 0.0 0.04786954 0.022619674 0.006312467 0.003945292 0.013150973 0.0 0.0021041557 0.007364545 0.005786428 0.04392425 0.011572856 0.015781168 0.045765385 0.2 0 255 0 Iteration 14 First 14 genes (1%) aaa:0.080 aac:0.018 aag:0.022 aat:0.072 aca:0.022 acc:0.005 acg:0.003 act:0.012 aga:0.022 agc:0.006 agg:0.014 agt:0.012 ata:0.063 atc:0.009 atg:0.017 att:0.039 caa:0.007 cac:0.005 cag:0.006 cat:0.012 cca:0.009 ccc:0.002 ccg:0.003 cct:0.007 cga:0.000 cgc:0.001 cgg:0.000 cgt:0.001 cta:0.007 ctc:0.001 ctg:0.003 ctt:0.014 gaa:0.050 gac:0.010 gag:0.013 gat:0.059 gca:0.023 gcc:0.005 gcg:0.004 gct:0.013 gga:0.017 ggc:0.010 ggg:0.005 ggt:0.015 gta:0.019 gtc:0.002 gtg:0.003 gtt:0.018 taa:0.000 tac:0.015 tag:0.000 tat:0.048 tca:0.023 tcc:0.006 tcg:0.004 tct:0.013 tga:0.000 tgc:0.002 tgg:0.007 tgt:0.006 tta:0.044 ttc:0.012 ttg:0.016 ttt:0.046 CodonUsageIt14 sphere 0.0796949 0.017885324 0.022093635 0.072330356 0.022093635 0.00499737 0.003419253 0.011835876 0.021567596 0.005786428 0.013677012 0.012361915 0.06259863 0.008942662 0.017096264 0.039452918 0.006838506 0.00499737 0.006312467 0.011835876 0.008942662 0.0018411363 0.002893214 0.007364545 2.6301946E-4 5.2603893E-4 2.6301946E-4 0.0010520779 0.0071015256 0.0010520779 0.0026301946 0.013940032 0.04971068 0.010257759 0.013150973 0.05865334 0.022619674 0.0047343504 0.0036822725 0.013413993 0.016570225 0.00999474 0.0047343504 0.01472909 0.01946344 0.0021041557 0.003419253 0.018148342 0.0 0.01472909 0.0 0.04786954 0.022619674 0.006312467 0.003945292 0.013150973 0.0 0.0021041557 0.007364545 0.005786428 0.04392425 0.011572856 0.015781168 0.045765385 0.2 0 255 0 aaa:1.000 aac:0.247 aag:0.277 aat:1.000 aca:1.000 acc:0.226 acg:0.155 act:0.536 aga:1.000 agc:0.256 agg:0.634 agt:0.547 ata:1.000 atc:0.143 atg:1.000 att:0.630 caa:1.000 cac:0.422 cag:0.923 cat:1.000 cca:1.000 ccc:0.206 ccg:0.324 cct:0.824 cga:0.012 cgc:0.024 cgg:0.012 cgt:0.049 cta:0.162 ctc:0.024 ctg:0.060 ctt:0.317 gaa:1.000 gac:0.175 gag:0.265 gat:1.000 gca:1.000 gcc:0.209 gcg:0.163 gct:0.593 gga:1.000 ggc:0.603 ggg:0.286 ggt:0.889 gta:1.000 gtc:0.108 gtg:0.176 gtt:0.932 taa:0.000 tac:0.308 tag:0.000 tat:1.000 tca:1.000 tcc:0.279 tcg:0.174 tct:0.581 tga:0.000 tgc:0.364 tgg:1.000 tgt:1.000 tta:1.000 ttc:0.253 ttg:0.359 ttt:1.000 ttt:1.000 ttc:0.253 ttg:0.359 tta:1.000 tct:0.581 tcc:0.279 tcg:0.174 tca:1.000 tgt:1.000 tgc:0.364 tgg:1.000 tga:0.000 tat:1.000 tac:0.308 tag:0.000 taa:0.000 ctt:0.317 ctc:0.024 ctg:0.060 cta:0.162 cct:0.824 ccc:0.206 ccg:0.324 cca:1.000 cgt:0.049 cgc:0.024 cgg:0.012 cga:0.012 cat:1.000 cac:0.422 cag:0.923 caa:1.000 gtt:0.932 gtc:0.108 gtg:0.176 gta:1.000 gct:0.593 gcc:0.209 gcg:0.163 gca:1.000 ggt:0.889 ggc:0.603 ggg:0.286 gga:1.000 gat:1.000 gac:0.175 gag:0.265 gaa:1.000 att:0.630 atc:0.143 atg:1.000 ata:1.000 act:0.536 acc:0.226 acg:0.155 aca:1.000 agt:0.547 agc:0.256 agg:0.634 aga:1.000 aat:1.000 aac:0.247 aag:0.277 aaa:1.000 // 0 - CAICLASS // 1 - STRAND // 2 - GC_CONT // 3 - GC_CONT3 // 4 - GC_SKEW // 5 - AT_SKEW // 6 - GENELENGTH // 7 - CAIEXT --- -0.044427805 -0.6159721 -0.7927147 0.3021944 0.118300244 0.0067024054 NaN