Andrei Zinovyev






Be realistic, demand the impossible!

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PhD in Computer Science:
My formal speciality (as written in my Russian state PhD diploma): "Mathematical and software tools for computers, computational complexes and computer networks".
My university diploma was in theoretical physics (cosmology).
Since 2000 I am working in Bioinformatics and Systems Biology.
Current occupation:
Researcher at the Bioinformatics, biostatistics, epidemiology and computational systems biology of cancer unit of Institut Curie, Paris
Coordinator of Computational Systems Biology of Cancer team

was involved in the project Functional Genomics,
past member of Systems Epigenomics Group team


Research interests:
  • Systems biology in cancer studies
  • Bioinformatics: sequence analysis
  • Visualization of multidimensional and complex data
  • Model and dimension reduction in complex systems

My citations in Google Scholar
My repositories in GitHub
See the wordcloud of my publications in PUBMED:
The wordcloud of this page:

Books and selected book chapters: Articles in Wikipedia to which I have contributed
Selected papers and their abstracts:
On-going projects with my active participation:

 
 
 
 
 

Past projects:

 
 
 
APO-SYS (EU-FP7) - Apoptosis Systems Biology Applied to Cancer and AIDS (first European cancer systems biology project)
 
 
 
 
MIG - Method of Invariant Grids for chemical kinetics equations
 
ACE - Annotation of Complex Rnhancers (in progress), multilayered approach to study gene regulation
 
 
 
CAIJAVA - Comparison of different genomes, based on codon bias and automatic calculation of CAIs
PLUG&BLAST - Bioinformatics platform, oriented to the cluster-based parallel computations
FOREST HAHN - Forest model which shows that one can have twice bigger wood harvest arranging trees in a proper way

Conference and tutorials co-organizing
Coping with Complexity: Model Reduction and Data Analysis Research Workshop, Ambleside, Lake District, UK, August 31 – September 4, 2009

Presentations:
Modeling cell life and cell death in cancer (PDF)
How much non-coding DNA do eukaryotes require? (PDF)
Hierarchical cluster structures and symmetries in genomic sequences (PPT)
Invariant manifolds for reaction kinetics (PPT)
Non-linear Principal Manifolds - elastic maps approach (animated PPT)
CAI and the most biased genes (HTMLPPT)
Seven clusters in genomic triplet distributions (HTMLPPT)
ACE&RACE: annotation of complex/combinatorial expressions (PPT)
Doubling wood harvest with tree group planting (PPT)

Friendly and highly recommended links: Web pages of my colleages, friends and co-authors:
Contact information :
CV - BOOKS - PUBLICATIONS - PROJECTS - PRESENTATIONS - LINKS - CONTACT INFORMATION - PERSONAL