PCA plot of codon usage
PCA plot of codon usage

color by signature
Methanococcus_jannaschii Nanoarchaeum_equitans Sulfolobus_tokodaii Methanococcus_maripaludis Sulfolobus_solfataricus Picrophilus_torridus_DSM_9790 Thermoplasma_volcanium Pyrococcus_furiosus Methanosarcina_mazei Pyrococcus_horikoshii Methanosarcina_acetivorans Pyrococcus_abyssi Thermoplasma_acidophilum Archaeoglobus_fulgidus Methanobacterium_thermoautotrophicum Pyrobaculum_aerophilum Aeropyrum_pernix Methanopyrus_kandleri Halobacterium_sp Wigglesworthia_brevipalpis Mycoplasma_mycoides Mycoplasma_mobile_163K Buchnera_aphidicola_Sg Ureaplasma_urealyticum Mycoplasma_penetrans Buchnera_sp Mycoplasma_pulmonis Mesoplasma_florum_L1 Fusobacterium_nucleatum Blochmannia_floridanus Onion_yellows_phytoplasma Clostridium_perfringens Borrelia_burgdorferi Clostridium_tetani_E88 Rickettsia_typhi_wilmington Rickettsia_prowazekii Campylobacter_jejuni Clostridium_acetobutylicum Mycoplasma_gallisepticum Mycoplasma_genitalium Staphylococcus_epidermidis_ATCC_12228 Rickettsia_conorii Staphylococcus_aureus_Mu50 Lactobacillus_johnsonii_NCC_533 Parachlamydia_sp_UWE25 Bacillus_anthracis_A2012 Leptospira_interrogans Wolbachia_endosymbiont_of_Drosophila_melanogaster Bacillus_cereus_ATCC14579 Lactococcus_lactis Bacillus_thuringiensis_konkukian Streptococcus_agalactiae_2603 Oceanobacillus_iheyensis Helicobacter_hepaticus Prochlorococcus_marinus_CCMP1375 Streptococcus_mutans Listeria_innocua Enterococcus_faecalis_V583 Thermoanaerobacter_tengcongensis Treponema_denticola_ATCC_35405 Listeria_monocytogenes Haemophilus_influenzae Haemophilus_ducreyi_35000HP Bartonella_henselae_Houston-1 Streptococcus_pyogenes Bartonella_quintana_Toulouse Helicobacter_pylori_26695 Chlamydophila_caviae Streptococcus_pneumoniae_TIGR4 Mycoplasma_pneumoniae Chlamydia_muridarum Pasteurella_multocida Acinetobacter_sp_ADP1 Chlamydophila_pneumoniae_AR39 Chlamydia_trachomatis Nostoc_sp Coxiella_burnetii Photorhabdus_luminescens Bacteroides_thetaiotaomicron_VPI-5482 Aquifex_aeolicus Bacillus_subtilis Bacillus_halodurans Lactobacillus_plantarum Vibrio_parahaemolyticus Shewanella_oneidensis Thermotoga_maritima Tropheryma_whipplei_TW08_27 Vibrio_vulnificus_CMCP6 Desulfotalea_psychrophila_LSv54 Yersinia_pestis_CO92 Vibrio_cholerae Synechocystis_PCC6803 Porphyromonas_gingivalis_W83 Wolinella_succinogenes Bdellovibrio_bacteriovorus Nitrosomonas_europaea Escherichia_coli_K12 Shigella_flexneri_2a Erwinia_carotovora_atroseptica_SCRI1043 Neisseria_meningitidis_MC58 Salmonella_typhi Salmonella_typhimurium_LT2 Xylella_fastidiosa Treponema_pallidum Corynebacterium_diphtheriae Corynebacterium_glutamicum Thermosynechococcus_elongatus Pirellula_sp Chlorobium_tepidum_TLS Brucella_melitensis Brucella_suis_1330 Mycobacterium_leprae Pseudomonas_syringae Agrobacterium_tumefaciens_C58_Cereon Synechococcus_sp_WH8102 Propionibacterium_acnes_KPA171202 Bifidobacterium_longum Geobacter_sulfurreducens Pseudomonas_putida_KT2440 Gloeobacter_violaceus Sinorhizobium_meliloti Mesorhizobium_loti Corynebacterium_efficiens_YS-314 Desulfovibrio_vulgaris_Hildenborough Bradyrhizobium_japonicum Xanthomonas_citri Chromobacterium_violaceum Rhodopseudomonas_palustris_CGA009 Xanthomonas_campestris Mycobacterium_tuberculosis_CDC1551 Mycobacterium_bovis Pseudomonas_aeruginosa Deinococcus_radiodurans Ralstonia_solanacearum Caulobacter_crescentus Leifsonia_xyli_xyli Bordetella_pertussis Bordetella_bronchiseptica Bordetella_parapertussis Mycobacterium_avium_paratuberculosis Thermus_thermophilus_HB27 Streptomyces_avermitilis Streptomyces_coelicolor