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## C

capture() - Method in class jprotein.rasmol.CapturingCanvas3D
capture() - Method in class jprotein.rasmol.ProteinEngine3D
CapturingCanvas3D - Class in jprotein.rasmol
CapturingCanvas3D(GraphicsConfiguration) - Constructor for class jprotein.rasmol.CapturingCanvas3D
Clustal - Class in jprotein.data.dataformat.parser
Clustal() - Constructor for class jprotein.data.dataformat.parser.Clustal
ClustalFileReader - Class in jprotein.io.file
ClustalFileReader(String) - Constructor for class jprotein.io.file.ClustalFileReader
ClustalW - Class in jprotein.external
ClustalW(String, String) - Constructor for class jprotein.external.ClustalW
cluster(Vector) - Method in class jprotein.cluster.Clustering
Cluster - Class in jprotein.cluster.data
Cluster(float) - Constructor for class jprotein.cluster.data.Cluster
Clustering - Class in jprotein.cluster
Clustering(Sequence3D, float) - Constructor for class jprotein.cluster.Clustering
Command - Class in jprotein.external
Command(String) - Constructor for class jprotein.external.Command
ConfigFile - Class in jprotein
ConfigFile(String) - Constructor for class jprotein.ConfigFile
containsAtomCoordinates() - Method in class jprotein.data.datatype.Residue3D

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