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## Uses of Class
jprotein.tree.data.SimpleNode

Packages that use SimpleNode
jprotein.tree.data |
jprotein.tree.tools |

Uses of SimpleNode in jprotein.tree.data

Subclasses of SimpleNode in jprotein.tree.data
`class` | `Node`

Constructors in jprotein.tree.data with parameters of type SimpleNode
`VisualNode(SimpleNode node, VisualLeaf left, VisualLeaf right)`

Uses of SimpleNode in jprotein.tree.tools

Methods in jprotein.tree.tools with parameters of type SimpleNode
`Leaf` | `Tree.getLeaf(SimpleNode node, int direction)`
`Leaf` | `Tree.getLeaf(SimpleNode root, Sequence alignment)`
`java.util.Vector` | `Tree.getNodeDistance(SimpleNode root, double distance)`
`java.util.Vector` | `Tree.getNodePartition(SimpleNode root, double maxDistance)`
`double` | `Tree.getPathDistance(SimpleNode root, PathIndex pathIndex)`
`PathIndex` | `Tree.getPathIndex(SimpleNode root, Leaf leaf)`
`java.util.Vector` | `Tree.getTraceAnalysis(SimpleNode root)`
`double` | `Tree.getVertice(SimpleNode node, int direction)`
`void` | `Tree.moveRoot(SimpleNode root, PathIndex pathIndex, double distance)`
`void` | `Tree.rootMidTree(SimpleNode root, Leaf leaf1, Leaf leaf2)`
`void` | `Tree.setLeaf(SimpleNode node, int direction, Leaf leaf)`
`void` | `Tree.setVertice(SimpleNode node, int direction, double distance)`
`void` | `Tree.shiftRoot(SimpleNode root, int direction1, int direction2)`
`void` | `Tree.translateRoot(SimpleNode root, int direction, double distance)`

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