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## jprotein.data.dataformat.parser
Class BlastPairwise

    java.lang.Object
      jprotein.data.dataformat.parser.Blast
          jprotein.data.dataformat.parser.BlastPairwise

    public class BlastPairwise

extends Blast

Constructor Summary
`BlastPairwise()`

Method Summary
`static java.util.Vector` | `getAlignmentComposition(java.util.Vector pAli, Sequence ref)`
`static java.util.Vector` | `getCompositionFrequencies(java.util.Vector ac)`
`static java.util.Vector` | `getInformationContent(java.util.Vector acf)`
`static java.util.Vector` | `getPairwiseInfo(Format bf)`

Methods inherited from class jprotein.data.dataformat.parser.Blast
`filterSequenceEValues, filterSequenceIdentities, filterSequenceLengths, getSequenceInfo, removeRedundance`

Methods inherited from class java.lang.Object
`equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

Constructor Detail

### BlastPairwise

    public BlastPairwise()

Method Detail

### getPairwiseInfo

    public static java.util.Vector getPairwiseInfo(Format bf)

### getAlignmentComposition

    public static java.util.Vector getAlignmentComposition(java.util.Vector pAli,
                                                           Sequence ref)

### getCompositionFrequencies

    public static java.util.Vector getCompositionFrequencies(java.util.Vector ac)

### getInformationContent

    public static java.util.Vector getInformationContent(java.util.Vector acf)

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