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## jprotein.tree.data
Class Leaf

    java.lang.Object
      java.util.AbstractCollection
          java.util.AbstractList
              java.util.Vector
                  jprotein.tree.data.Leaf

All Implemented Interfaces:
  java.io.Serializable, java.lang.Cloneable, java.lang.Iterable, java.util.Collection, java.util.List, java.util.RandomAccess

Direct Known Subclasses:
  SimpleNode

    public class Leaf

extends java.util.Vector

See Also:
  Serialized Form

Constructor Summary
`Leaf()`
`Leaf(Sequence ali, java.util.Vector distances)`

Method Summary
`void` | `addDistance(double d)`
`boolean` | `equals(java.lang.Object o)`
`java.util.Vector` | `getBackTrace()`
`java.util.Vector` | `getConservedResidue()`
`double` | `getDistance(int index)`
`java.lang.Double` | `getDoubleDistance(int index)`
`Sequence` | `getSequence()`
`double` | `getSum()`
`void` | `initConservedResidue()`
`void` | `removeDistance(int index)`
`void` | `resetConservedResidue()`
`void` | `setBackTrace(java.util.Vector backtrace)`
`void` | `setConservedResidue(java.util.Vector conservedIndex)`
`java.lang.String` | `toString()`
`void` | `unload()`

Methods inherited from class java.util.Vector
`add, add, addAll, addAll, addElement, capacity, clear, clone, contains, containsAll, copyInto, elementAt, elements, ensureCapacity, firstElement, get, hashCode, indexOf, indexOf, insertElementAt, isEmpty, lastElement, lastIndexOf, lastIndexOf, remove, remove, removeAll, removeAllElements, removeElement, removeElementAt, retainAll, set, setElementAt, setSize, size, subList, toArray, toArray, trimToSize`

Methods inherited from class java.util.AbstractList
`iterator, listIterator, listIterator`

Methods inherited from class java.lang.Object
`getClass, notify, notifyAll, wait, wait, wait`

Methods inherited from interface java.util.List
`iterator, listIterator, listIterator`

Constructor Detail

### Leaf

    public Leaf()

### Leaf

    public Leaf(Sequence ali,
                java.util.Vector distances)

Method Detail

### getSequence

    public Sequence getSequence()

### toString

    public java.lang.String toString()

  Overrides:
    `toString` in class `java.util.Vector`

### getSum

    public double getSum()

### addDistance

    public void addDistance(double d)

### removeDistance

    public void removeDistance(int index)

### getDistance

    public double getDistance(int index)

### getDoubleDistance

    public java.lang.Double getDoubleDistance(int index)

### unload

    public void unload()

### getConservedResidue

    public java.util.Vector getConservedResidue()

### setConservedResidue

    public void setConservedResidue(java.util.Vector conservedIndex)

### resetConservedResidue

    public void resetConservedResidue()

### getBackTrace

    public java.util.Vector getBackTrace()

### setBackTrace

    public void setBackTrace(java.util.Vector backtrace)

### initConservedResidue

    public void initConservedResidue()

### equals

    public boolean equals(java.lang.Object o)

  Specified by:
    `equals` in interface `java.util.Collection`
  Specified by:
    `equals` in interface `java.util.List`
  Overrides:
    `equals` in class `java.util.Vector`

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