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## Uses of Class
jprotein.tree.tools.SubstitutionMatrix

Packages that use SubstitutionMatrix
jprotein.tree.tools |

Uses of SubstitutionMatrix in jprotein.tree.tools

Methods in jprotein.tree.tools with parameters of type SubstitutionMatrix
`void` | `DistanceMatrix.setSubstitutionMatrix(SubstitutionMatrix sm)`

Constructors in jprotein.tree.tools with parameters of type SubstitutionMatrix
`DistanceMatrix(MultiAlignment multiAlignment, SubstitutionMatrix sm)`
`NJ(MultiAlignment multiAlignment, SubstitutionMatrix sm)`

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