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## T

TestAccess - Class in jprotein
TestAccess() - Constructor for class jprotein.TestAccess
toFasta() - Method in class jprotein.data.datatype.Sequence
toString() - Method in class jprotein.data.datatype.Atom
toString() - Method in class jprotein.data.datatype.Atom1
toString() - Method in class jprotein.data.datatype.IndexedResidue
toString() - Method in class jprotein.data.datatype.MultiAlignment
toString() - Method in class jprotein.data.datatype.Residue
toString() - Method in class jprotein.data.datatype.Sequence
toString() - Method in class jprotein.rasmol.model.ResidueModel
toString() - Method in class jprotein.tree.data.Leaf
toString() - Method in class jprotein.tree.data.SimpleNode
toString() - Method in class jprotein.tree.data.VisualLeaf
toString() - Method in class jprotein.tree.tools.DistanceMatrix
toString() - Method in class jprotein.tree.tools.NJ
transform() - Method in class jprotein.io.file.PdbFileTransform
transformCut() - Method in class jprotein.io.file.PdbFileTransform
translateRoot(SimpleNode, int, double) - Method in class jprotein.tree.tools.Tree
Tree - Class in jprotein.tree.tools
Tree() - Constructor for class jprotein.tree.tools.Tree
TreeRecord - Class in jprotein.tree.data
TreeRecord(int, int[]) - Constructor for class jprotein.tree.data.TreeRecord

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