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## I

identityChecked() - Method in class jprotein.data.dataformat.info.BlastSequenceInfo
identityChecked() - Method in class jprotein.data.datatype.SequenceInformation
INDEXED - Static variable in class jprotein.data.datatype.Sequence3D
IndexedResidue - Class in jprotein.data.datatype
IndexedResidue(Residue, int) - Constructor for class jprotein.data.datatype.IndexedResidue
initAccess() - Method in class jprotein.data.datatype.Atom
  Initialisation à "true" de l'accessibilité des points discrétisant la surface de la sphère représentant l'atome.
initAccess() - Method in class jprotein.data.datatype.Atom1
initConservedResidue() - Method in class jprotein.tree.data.Leaf
initConservedResidue() - Method in class jprotein.tree.data.SimpleNode
initData() - Method in class jprotein.io.net.BlastClient
initData() - Method in class jprotein.io.net.PsiBlastClient
initData() - Method in class jprotein.io.net.PsiBlastClientOld
initDistanceMap(Sequence3D) - Method in class jprotein.cluster.data.DistanceMap
initTree(Leaf) - Method in class jprotein.tree.VisualTree
instance() - Static method in class jprotein.tree.Window
isAccessible(int) - Method in class jprotein.data.datatype.Atom
isAccessible(int) - Method in class jprotein.data.datatype.Atom1
isAccessible() - Method in class jprotein.data.datatype.Residue
isAlive() - Method in class jprotein.ProgressIndicator
isExtension(int, int, int) - Method in class jprotein.tree.tools.DistanceMatrix
isGapped(int, int, int) - Method in class jprotein.tree.tools.DistanceMatrix
isIdentical(Sequence) - Method in class jprotein.data.datatype.Sequence
isNeighbour(Residue3D) - Method in class jprotein.cluster.data.Cluster
isSelected(int) - Method in class jprotein.rasmol.SequenceAppearance
isSelected() - Method in class jprotein.tree.data.VisualLeaf
isSideChainAtom() - Method in class jprotein.data.datatype.Atom
  l'atome appartient il à une chaine latérale
isSideChainAtom() - Method in class jprotein.data.datatype.Atom1
isTransparent(int) - Method in class jprotein.rasmol.SequenceAppearance
isVisible(int) - Method in class jprotein.rasmol.SequenceAppearance
iteratePsiPutCommand() - Method in class jprotein.io.net.PsiBlastClient
iterPutCommand() - Method in class jprotein.io.net.PsiBlastClientOld

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