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## A

access2PDB(Sequence3D, double, float) - Static method in class jprotein.TestAccess
addAlignment(Sequence) - Method in class jprotein.data.datatype.MultiAlignment
addAtom(String, Point3f) - Method in class jprotein.data.datatype.Residue3D
  Ajout d'atomes
addDirection(int) - Method in class jprotein.tree.data.PathIndex
addDistance(double) - Method in class jprotein.tree.data.Leaf
addPairwiseAlignment(PairwiseAlignment) - Method in class jprotein.data.datatype.MultiPairwiseAlignment
addProxNode(ProxNode) - Method in class jprotein.cluster.data.ProxList
addResidue(ProxList) - Method in class jprotein.cluster.data.Cluster
addResidue(String) - Method in class jprotein.data.datatype.Sequence3D
addResidue(Residue3D) - Method in class jprotein.data.datatype.Sequence3D
Alignment - Class in jprotein.data.datatype
Alignment() - Constructor for class jprotein.data.datatype.Alignment
Alignment(String, String) - Constructor for class jprotein.data.datatype.Alignment
allPreliminaryChecked() - Method in class jprotein.data.dataformat.info.BlastSequenceInfo
analyse(String, double, double) - Static method in class jprotein.TestAccess
Atom - Class in jprotein.data.datatype
  Classe représentant les atomes ainsi que leurs coordonnées 3D et gérant leur accessibilité par rapport à une sonde (paramètre "probe_radius" du fichier de configuration).
Atom(String) - Constructor for class jprotein.data.datatype.Atom
Atom(String, Point3f) - Constructor for class jprotein.data.datatype.Atom
Atom1 - Class in jprotein.data.datatype
Atom1(String, Point3f) - Constructor for class jprotein.data.datatype.Atom1

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