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## P

paintComponent(Graphics) - Method in class jprotein.tree.VisualTree
PairwiseAlignment - Class in jprotein.data.datatype
PairwiseAlignment() - Constructor for class jprotein.data.datatype.PairwiseAlignment
parseGI(Vector) - Method in class jprotein.io.net.PsiBlastClient
parseGI(Vector) - Method in class jprotein.io.net.PsiBlastClientOld
parsePGR(Vector) - Method in class jprotein.io.net.PsiBlastClient
PathIndex - Class in jprotein.tree.data
PathIndex() - Constructor for class jprotein.tree.data.PathIndex
PDB - Class in jprotein.data.dataformat.parser
  Classe pour recuperer et stocker les informations d'un fichier pdb.
PDB() - Constructor for class jprotein.data.dataformat.parser.PDB
PdbCodeClient - Class in jprotein.io.net
  Classe pour r�cup�rer une structure chez un client web via un code pdb
PdbCodeClient() - Constructor for class jprotein.io.net.PdbCodeClient
  Initialisation du client web
PdbFileReader - Class in jprotein.io.file
  Classe pour lire un fichier pdb en le stockant ligne par ligne dans un vecteur.
PdbFileReader(String) - Constructor for class jprotein.io.file.PdbFileReader
PdbFileReader2 - Class in jprotein.io.file
PdbFileReader2(String) - Constructor for class jprotein.io.file.PdbFileReader2
PdbFileTransform - Class in jprotein.io.file
PdbFileTransform(String, String, Vector) - Constructor for class jprotein.io.file.PdbFileTransform
PdbSequenceInfo - Class in jprotein.data.dataformat.info
  Classe pour stocker les infos sur les residus 3D d'une sequence et leurs proprietes (temperature)
PdbSequenceInfo(Sequence3D, Vector) - Constructor for class jprotein.data.dataformat.info.PdbSequenceInfo
pNorm(double) - Static method in class jprotein.tools.Statistic
pNorm(double, double) - Static method in class jprotein.tools.Statistic
pNorm(double) - Static method in class jprotein.tree.tools.Statistic
pNorm(double, double) - Static method in class jprotein.tree.tools.Statistic
postSwap() - Method in class jprotein.rasmol.CapturingCanvas3D
printProgress() - Method in class jprotein.ProgressIndicator
product(Vector, Vector) - Static method in class jprotein.tools.Statistic
product(Vector, Vector) - Static method in class jprotein.tree.tools.Statistic
ProgressIndicator - Class in jprotein
ProgressIndicator(String, int) - Constructor for class jprotein.ProgressIndicator
ProgressIndicator(String) - Constructor for class jprotein.ProgressIndicator
ProgressIndicator(String, boolean) - Constructor for class jprotein.ProgressIndicator
progressViewable() - Method in class jprotein.ProgressIndicator
Property - Class in jprotein.rasmol
Property(Color3f) - Constructor for class jprotein.rasmol.Property
Property(Color3f, Color3f, Color3f, Color3f) - Constructor for class jprotein.rasmol.Property
Property(Color3f, Vector) - Constructor for class jprotein.rasmol.Property
Property(Vector, Color3f, Color3f, Color3f, Color3f) - Constructor for class jprotein.rasmol.Property
ProteinEngine3D - Class in jprotein.rasmol
ProteinEngine3D() - Constructor for class jprotein.rasmol.ProteinEngine3D
ProteinEngine3D(Vector, Vector) - Constructor for class jprotein.rasmol.ProteinEngine3D
ProtViewer - Class in jprotein.rasmol
ProtViewer() - Constructor for class jprotein.rasmol.ProtViewer
ProxList - Class in jprotein.cluster.data
ProxList(Residue3D, int) - Constructor for class jprotein.cluster.data.ProxList
ProxNode - Class in jprotein.cluster.data
ProxNode(ProxList, float) - Constructor for class jprotein.cluster.data.ProxNode
PsiBlastClient - Class in jprotein.io.net
PsiBlastClient(String, String, String, int, double, int, int, int) - Constructor for class jprotein.io.net.PsiBlastClient
PsiBlastClientOld - Class in jprotein.io.net
PsiBlastClientOld(String, String, String, int, double, int, int, int) - Constructor for class jprotein.io.net.PsiBlastClientOld
PsiJET - Class in jprotein
PsiJET() - Constructor for class jprotein.PsiJET

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