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## Uses of Class
jprotein.tree.data.Leaf

Packages that use Leaf
jprotein.tree |
jprotein.tree.data |
jprotein.tree.tools |

Uses of Leaf in jprotein.tree

Methods in jprotein.tree with parameters of type Leaf
`VisualLeaf` | `VisualTree.initTree(Leaf root)`
`void` | `VisualTree.setRoot(Leaf root)`

Constructors in jprotein.tree with parameters of type Leaf
`VisualTree(Leaf root)`

Uses of Leaf in jprotein.tree.data

Subclasses of Leaf in jprotein.tree.data
`class` | `Node`
`class` | `SimpleNode`

Methods in jprotein.tree.data that return Leaf
`Leaf` | `VisualLeaf.getLeaf()`
`Leaf` | `SimpleNode.goLeft()`
`Leaf` | `SimpleNode.goRight()`

Methods in jprotein.tree.data with parameters of type Leaf
`void` | `SimpleNode.setLeft(Leaf left)`
`void` | `SimpleNode.setRight(Leaf right)`

Constructors in jprotein.tree.data with parameters of type Leaf
`Node(Leaf left, Leaf right, double dIJ)`
`Node(Leaf left, Leaf right, double dIJ, double lambda)`
`SimpleNode(Leaf left, Leaf right)`
`VisualLeaf(Leaf leaf)`

Uses of Leaf in jprotein.tree.tools

Methods in jprotein.tree.tools that return Leaf
`Leaf` | `DistanceMatrix.getLeaf(int index)`
`Leaf` | `Tree.getLeaf(SimpleNode node, int direction)`
`Leaf` | `Tree.getLeaf(SimpleNode root, Sequence alignment)`

Methods in jprotein.tree.tools with parameters of type Leaf
`PathIndex` | `Tree.getPathIndex(SimpleNode root, Leaf leaf)`
`void` | `Tree.rootMidTree(SimpleNode root, Leaf leaf1, Leaf leaf2)`
`void` | `Tree.setLeaf(SimpleNode node, int direction, Leaf leaf)`

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