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## R

readFile(String) - Static method in class jprotein.io.file.FileIO
readFile() - Method in class jprotein.io.file.PdbFileReader2
readPdbFile(File, File) - Static method in class jprotein.JET
  Fonction qui lit le fichier pdb et lance le traitement de ce fichier
readPdbFile(File, File) - Static method in class jprotein.PsiJET
removeDistance(int) - Method in class jprotein.tree.data.Leaf
removeRedundance(Vector) - Static method in class jprotein.data.dataformat.parser.Blast
render(Graphics2D) - Method in class jprotein.tree.data.VisualLeaf
render(Graphics2D) - Method in class jprotein.tree.data.VisualNode
resample(Vector, int) - Static method in class jprotein.tools.Statistic
resample(Vector, int) - Static method in class jprotein.tree.tools.Statistic
reset() - Method in class jprotein.rasmol.ProteinEngine3D
reset() - Method in class jprotein.tree.Window
resetConservedResidue() - Method in class jprotein.tree.data.Leaf
resetConservedResidue() - Method in class jprotein.tree.data.SimpleNode
Residue - Class in jprotein.data.datatype
  Classe pour gerer les codes, symboles des residus, la position et l'accessibilite du residu
Residue(String) - Constructor for class jprotein.data.datatype.Residue
Residue(char) - Constructor for class jprotein.data.datatype.Residue
Residue3D - Class in jprotein.data.datatype
  On ajoute une chaine squelette, une chaine laterale (composes d'atomes), un centre de gravite, un rayon max (par rapport au centre de gravite) et un sequence_break (?)
Residue3D(String) - Constructor for class jprotein.data.datatype.Residue3D
  CONSTRUCTEURS
Residue3D(String, int) - Constructor for class jprotein.data.datatype.Residue3D
ResidueModel - Class in jprotein.rasmol.model
ResidueModel(Residue3D, int, Color3f) - Constructor for class jprotein.rasmol.model.ResidueModel
RIGHT - Static variable in class jprotein.tree.tools.Tree
rootMidTree(SimpleNode, Leaf, Leaf) - Method in class jprotein.tree.tools.Tree
rootTree() - Method in class jprotein.tree.tools.NJ
run() - Method in class jprotein.ProgressIndicator

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