Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV CLASS NEXT CLASS | FRAMES NO FRAMES
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD

## jprotein.data.dataformat.parser
Class Blast

    java.lang.Object
      jprotein.data.dataformat.parser.Blast

Direct Known Subclasses:
  BlastPairwise

    public class Blast

extends java.lang.Object

Constructor Summary
`Blast()`

Method Summary
`static void` | `filterSequenceEValues(java.util.Vector sequenceList, double max)`
`static void` | `filterSequenceIdentities(java.util.Vector sequenceList, int low, int high)`
`static void` | `filterSequenceLengths(java.util.Vector sequenceList, int low, int high)`
`static java.util.Vector` | `getSequenceInfo(Format bf)`
`static void` | `removeRedundance(java.util.Vector sequenceList)`

Methods inherited from class java.lang.Object
`equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

Constructor Detail

### Blast

    public Blast()

Method Detail

### filterSequenceIdentities

    public static void filterSequenceIdentities(java.util.Vector sequenceList,
                                                int low,
                                                int high)

### filterSequenceEValues

    public static void filterSequenceEValues(java.util.Vector sequenceList,
                                             double max)

### filterSequenceLengths

    public static void filterSequenceLengths(java.util.Vector sequenceList,
                                             int low,
                                             int high)

### removeRedundance

    public static void removeRedundance(java.util.Vector sequenceList)

### getSequenceInfo

    public static java.util.Vector getSequenceInfo(Format bf)

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV CLASS NEXT CLASS | FRAMES NO FRAMES
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD