jprotein.data.dataformat.parser
Class BlastPairwise

java.lang.Object
  extended by jprotein.data.dataformat.parser.Blast
      extended by jprotein.data.dataformat.parser.BlastPairwise

public class BlastPairwise
extends Blast


Constructor Summary
BlastPairwise()
           
 
Method Summary
static java.util.Vector getAlignmentComposition(java.util.Vector pAli, Sequence ref)
           
static java.util.Vector getCompositionFrequencies(java.util.Vector ac)
           
static java.util.Vector getInformationContent(java.util.Vector acf)
           
static java.util.Vector getPairwiseInfo(Format bf)
           
 
Methods inherited from class jprotein.data.dataformat.parser.Blast
filterSequenceEValues, filterSequenceIdentities, filterSequenceLengths, getSequenceInfo, removeRedundance
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

BlastPairwise

public BlastPairwise()
Method Detail

getPairwiseInfo

public static java.util.Vector getPairwiseInfo(Format bf)

getAlignmentComposition

public static java.util.Vector getAlignmentComposition(java.util.Vector pAli,
                                                       Sequence ref)

getCompositionFrequencies

public static java.util.Vector getCompositionFrequencies(java.util.Vector ac)

getInformationContent

public static java.util.Vector getInformationContent(java.util.Vector acf)