Uses of Class
jprotein.tree.data.Leaf

Packages that use Leaf
jprotein.tree   
jprotein.tree.data   
jprotein.tree.tools   
 

Uses of Leaf in jprotein.tree
 

Methods in jprotein.tree with parameters of type Leaf
 VisualLeaf VisualTree.initTree(Leaf root)
           
 void VisualTree.setRoot(Leaf root)
           
 

Constructors in jprotein.tree with parameters of type Leaf
VisualTree(Leaf root)
           
 

Uses of Leaf in jprotein.tree.data
 

Subclasses of Leaf in jprotein.tree.data
 class Node
           
 class SimpleNode
           
 

Methods in jprotein.tree.data that return Leaf
 Leaf VisualLeaf.getLeaf()
           
 Leaf SimpleNode.goLeft()
           
 Leaf SimpleNode.goRight()
           
 

Methods in jprotein.tree.data with parameters of type Leaf
 void SimpleNode.setLeft(Leaf left)
           
 void SimpleNode.setRight(Leaf right)
           
 

Constructors in jprotein.tree.data with parameters of type Leaf
Node(Leaf left, Leaf right, double dIJ)
           
Node(Leaf left, Leaf right, double dIJ, double lambda)
           
SimpleNode(Leaf left, Leaf right)
           
VisualLeaf(Leaf leaf)
           
 

Uses of Leaf in jprotein.tree.tools
 

Methods in jprotein.tree.tools that return Leaf
 Leaf DistanceMatrix.getLeaf(int index)
           
 Leaf Tree.getLeaf(SimpleNode node, int direction)
           
 Leaf Tree.getLeaf(SimpleNode root, Sequence alignment)
           
 

Methods in jprotein.tree.tools with parameters of type Leaf
 PathIndex Tree.getPathIndex(SimpleNode root, Leaf leaf)
           
 void Tree.rootMidTree(SimpleNode root, Leaf leaf1, Leaf leaf2)
           
 void Tree.setLeaf(SimpleNode node, int direction, Leaf leaf)