jprotein.data.dataformat.parser
Class Blast

java.lang.Object
  extended by jprotein.data.dataformat.parser.Blast
Direct Known Subclasses:
BlastPairwise

public class Blast
extends java.lang.Object


Constructor Summary
Blast()
           
 
Method Summary
static void filterSequenceEValues(java.util.Vector sequenceList, double max)
           
static void filterSequenceIdentities(java.util.Vector sequenceList, int low, int high)
           
static void filterSequenceLengths(java.util.Vector sequenceList, int low, int high)
           
static java.util.Vector getSequenceInfo(Format bf)
           
static void removeRedundance(java.util.Vector sequenceList)
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Blast

public Blast()
Method Detail

filterSequenceIdentities

public static void filterSequenceIdentities(java.util.Vector sequenceList,
                                            int low,
                                            int high)

filterSequenceEValues

public static void filterSequenceEValues(java.util.Vector sequenceList,
                                         double max)

filterSequenceLengths

public static void filterSequenceLengths(java.util.Vector sequenceList,
                                         int low,
                                         int high)

removeRedundance

public static void removeRedundance(java.util.Vector sequenceList)

getSequenceInfo

public static java.util.Vector getSequenceInfo(Format bf)