jprotein.tree.data
Class Node

java.lang.Object
  extended by java.util.AbstractCollection
      extended by java.util.AbstractList
          extended by java.util.Vector
              extended by jprotein.tree.data.Leaf
                  extended by jprotein.tree.data.SimpleNode
                      extended by jprotein.tree.data.Node
All Implemented Interfaces:
java.io.Serializable, java.lang.Cloneable, java.lang.Iterable, java.util.Collection, java.util.List, java.util.RandomAccess

public class Node
extends SimpleNode
implements java.io.Serializable

See Also:
Serialized Form

Constructor Summary
Node(Leaf left, Leaf right, double dIJ)
           
Node(Leaf left, Leaf right, double dIJ, double lambda)
           
 
Method Summary
 
Methods inherited from class jprotein.tree.data.SimpleNode
equals, getLeftVertice, getRightVertice, goLeft, goRight, initConservedResidue, resetConservedResidue, setLeft, setLeftVertice, setRight, setRightVertice, toString
 
Methods inherited from class jprotein.tree.data.Leaf
addDistance, getBackTrace, getConservedResidue, getDistance, getDoubleDistance, getSequence, getSum, removeDistance, setBackTrace, setConservedResidue, unload
 
Methods inherited from class java.util.Vector
add, add, addAll, addAll, addElement, capacity, clear, clone, contains, containsAll, copyInto, elementAt, elements, ensureCapacity, firstElement, get, hashCode, indexOf, indexOf, insertElementAt, isEmpty, lastElement, lastIndexOf, lastIndexOf, remove, remove, removeAll, removeAllElements, removeElement, removeElementAt, retainAll, set, setElementAt, setSize, size, subList, toArray, toArray, trimToSize
 
Methods inherited from class java.util.AbstractList
iterator, listIterator, listIterator
 
Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface java.util.List
iterator, listIterator, listIterator
 

Constructor Detail

Node

public Node(Leaf left,
            Leaf right,
            double dIJ)

Node

public Node(Leaf left,
            Leaf right,
            double dIJ,
            double lambda)