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Packages that use Leaf | |
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jprotein.tree | |
jprotein.tree.data | |
jprotein.tree.tools |
Uses of Leaf in jprotein.tree |
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Methods in jprotein.tree with parameters of type Leaf | |
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VisualLeaf |
VisualTree.initTree(Leaf root)
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void |
VisualTree.setRoot(Leaf root)
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Constructors in jprotein.tree with parameters of type Leaf | |
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VisualTree(Leaf root)
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Uses of Leaf in jprotein.tree.data |
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Subclasses of Leaf in jprotein.tree.data | |
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class |
Node
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class |
SimpleNode
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Methods in jprotein.tree.data that return Leaf | |
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Leaf |
VisualLeaf.getLeaf()
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Leaf |
SimpleNode.goLeft()
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Leaf |
SimpleNode.goRight()
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Methods in jprotein.tree.data with parameters of type Leaf | |
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void |
SimpleNode.setLeft(Leaf left)
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void |
SimpleNode.setRight(Leaf right)
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Constructors in jprotein.tree.data with parameters of type Leaf | |
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Node(Leaf left,
Leaf right,
double dIJ)
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Node(Leaf left,
Leaf right,
double dIJ,
double lambda)
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SimpleNode(Leaf left,
Leaf right)
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VisualLeaf(Leaf leaf)
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Uses of Leaf in jprotein.tree.tools |
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Methods in jprotein.tree.tools that return Leaf | |
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Leaf |
DistanceMatrix.getLeaf(int index)
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Leaf |
Tree.getLeaf(SimpleNode node,
int direction)
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Leaf |
Tree.getLeaf(SimpleNode root,
Sequence alignment)
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Methods in jprotein.tree.tools with parameters of type Leaf | |
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PathIndex |
Tree.getPathIndex(SimpleNode root,
Leaf leaf)
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void |
Tree.rootMidTree(SimpleNode root,
Leaf leaf1,
Leaf leaf2)
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void |
Tree.setLeaf(SimpleNode node,
int direction,
Leaf leaf)
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