jprotein.data.datatype
Class SequenceInformation

java.lang.Object
  extended by java.util.AbstractCollection
      extended by java.util.AbstractList
          extended by java.util.Vector
              extended by jprotein.data.datatype.Sequence
                  extended by jprotein.data.datatype.SequenceInformation
All Implemented Interfaces:
java.io.Serializable, java.lang.Cloneable, java.lang.Iterable, java.util.Collection, java.util.List, java.util.RandomAccess

public class SequenceInformation
extends Sequence

See Also:
Serialized Form

Constructor Summary
SequenceInformation()
           
 
Method Summary
 boolean expectChecked()
           
 int getEndOverlap()
           
 double getExpectValue()
           
 int getIdentity()
           
 int getStartOverlap()
           
 boolean identityChecked()
           
 boolean overlapChecked()
           
 void setEndOverlap(int end)
           
 void setExpectValue(double expect)
           
 void setIdentity(int identity)
           
 void setStartOverlap(int start)
           
 
Methods inherited from class jprotein.data.datatype.Sequence
equals, getNonGappedPosition, getNonGappedSequenceLength, getResidue, getSequence, getSequenceLength, getSequenceName, isIdentical, setSequence, setSequenceName, toFasta, toString
 
Methods inherited from class java.util.Vector
add, add, addAll, addAll, addElement, capacity, clear, clone, contains, containsAll, copyInto, elementAt, elements, ensureCapacity, firstElement, get, hashCode, indexOf, indexOf, insertElementAt, isEmpty, lastElement, lastIndexOf, lastIndexOf, remove, remove, removeAll, removeAllElements, removeElement, removeElementAt, retainAll, set, setElementAt, setSize, size, subList, toArray, toArray, trimToSize
 
Methods inherited from class java.util.AbstractList
iterator, listIterator, listIterator
 
Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface java.util.List
iterator, listIterator, listIterator
 

Constructor Detail

SequenceInformation

public SequenceInformation()
Method Detail

setStartOverlap

public void setStartOverlap(int start)

getStartOverlap

public int getStartOverlap()

setEndOverlap

public void setEndOverlap(int end)

getEndOverlap

public int getEndOverlap()

overlapChecked

public boolean overlapChecked()

setIdentity

public void setIdentity(int identity)

getIdentity

public int getIdentity()

identityChecked

public boolean identityChecked()

setExpectValue

public void setExpectValue(double expect)

getExpectValue

public double getExpectValue()

expectChecked

public boolean expectChecked()