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java.lang.Objectjava.util.AbstractCollection
java.util.AbstractList
java.util.Vector
jprotein.data.datatype.MultiPairwiseAlignment
public class MultiPairwiseAlignment
Constructor Summary | |
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MultiPairwiseAlignment(Sequence ref)
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Method Summary | |
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void |
addPairwiseAlignment(PairwiseAlignment ali)
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java.util.Vector |
getAlignmentComposition()
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static java.util.Vector |
getCompositionFrequencies(java.util.Vector ac)
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static java.util.Vector |
getInformationContent(java.util.Vector acf)
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PairwiseAlignment |
getPairwiseAlignment(int index)
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static java.util.Vector |
sumAlignmentComposition(java.util.Vector ac1,
java.util.Vector ac2)
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Methods inherited from class java.util.Vector |
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add, add, addAll, addAll, addElement, capacity, clear, clone, contains, containsAll, copyInto, elementAt, elements, ensureCapacity, equals, firstElement, get, hashCode, indexOf, indexOf, insertElementAt, isEmpty, lastElement, lastIndexOf, lastIndexOf, remove, remove, removeAll, removeAllElements, removeElement, removeElementAt, retainAll, set, setElementAt, setSize, size, subList, toArray, toArray, toString, trimToSize |
Methods inherited from class java.util.AbstractList |
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iterator, listIterator, listIterator |
Methods inherited from class java.lang.Object |
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getClass, notify, notifyAll, wait, wait, wait |
Methods inherited from interface java.util.List |
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iterator, listIterator, listIterator |
Constructor Detail |
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public MultiPairwiseAlignment(Sequence ref)
Method Detail |
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public PairwiseAlignment getPairwiseAlignment(int index)
public void addPairwiseAlignment(PairwiseAlignment ali)
public java.util.Vector getAlignmentComposition()
public static java.util.Vector sumAlignmentComposition(java.util.Vector ac1, java.util.Vector ac2)
public static java.util.Vector getCompositionFrequencies(java.util.Vector ac)
public static java.util.Vector getInformationContent(java.util.Vector acf)
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