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java.lang.Objectjava.util.AbstractCollection
java.util.AbstractList
java.util.Vector
jprotein.data.datatype.Sequence
public class Sequence
Constructor Summary | |
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Sequence()
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Sequence(java.lang.String sequenceName)
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Sequence(java.lang.String sequenceName,
java.lang.String residueSequence)
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Method Summary | |
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boolean |
equals(java.lang.Object o)
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int |
getNonGappedPosition(int index)
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int |
getNonGappedSequenceLength()
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Residue |
getResidue(int pos)
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java.util.Vector |
getSequence()
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int |
getSequenceLength()
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java.lang.String |
getSequenceName()
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boolean |
isIdentical(Sequence seq)
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void |
setSequence(java.lang.String residueSequence)
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void |
setSequenceName(java.lang.String sequenceName)
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java.lang.String |
toFasta()
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java.lang.String |
toString()
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Methods inherited from class java.util.Vector |
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add, add, addAll, addAll, addElement, capacity, clear, clone, contains, containsAll, copyInto, elementAt, elements, ensureCapacity, firstElement, get, hashCode, indexOf, indexOf, insertElementAt, isEmpty, lastElement, lastIndexOf, lastIndexOf, remove, remove, removeAll, removeAllElements, removeElement, removeElementAt, retainAll, set, setElementAt, setSize, size, subList, toArray, toArray, trimToSize |
Methods inherited from class java.util.AbstractList |
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iterator, listIterator, listIterator |
Methods inherited from class java.lang.Object |
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getClass, notify, notifyAll, wait, wait, wait |
Methods inherited from interface java.util.List |
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iterator, listIterator, listIterator |
Constructor Detail |
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public Sequence()
public Sequence(java.lang.String sequenceName)
public Sequence(java.lang.String sequenceName, java.lang.String residueSequence)
Method Detail |
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public java.lang.String toString()
toString
in class java.util.Vector
public void setSequence(java.lang.String residueSequence)
public java.util.Vector getSequence()
public java.lang.String getSequenceName()
public int getSequenceLength()
public Residue getResidue(int pos)
public void setSequenceName(java.lang.String sequenceName)
public boolean equals(java.lang.Object o)
equals
in interface java.util.Collection
equals
in interface java.util.List
equals
in class java.util.Vector
public java.lang.String toFasta()
public int getNonGappedSequenceLength()
public int getNonGappedPosition(int index)
public boolean isIdentical(Sequence seq)
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