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java.lang.Objectjava.util.AbstractCollection
java.util.AbstractList
java.util.Vector
jprotein.data.datatype.Sequence
jprotein.data.dataformat.info.BlastSequenceInfo
public class BlastSequenceInfo
Constructor Summary | |
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BlastSequenceInfo()
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Method Summary | |
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boolean |
allPreliminaryChecked()
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boolean |
expectChecked()
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int |
getEndOverlap()
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double |
getEValue()
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int |
getIdentity()
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int |
getOverlapLength()
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int |
getStartOverlap()
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boolean |
identityChecked()
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int |
overlaps(BlastSequenceInfo seq)
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boolean |
overlapStartChecked()
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void |
setEndOverlap(int end)
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void |
setEValue(double expect)
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void |
setIdentity(int identity)
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void |
setOverlapLength(int length)
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void |
setStartOverlap(int start)
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Methods inherited from class jprotein.data.datatype.Sequence |
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equals, getNonGappedPosition, getNonGappedSequenceLength, getResidue, getSequence, getSequenceLength, getSequenceName, isIdentical, setSequence, setSequenceName, toFasta, toString |
Methods inherited from class java.util.Vector |
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add, add, addAll, addAll, addElement, capacity, clear, clone, contains, containsAll, copyInto, elementAt, elements, ensureCapacity, firstElement, get, hashCode, indexOf, indexOf, insertElementAt, isEmpty, lastElement, lastIndexOf, lastIndexOf, remove, remove, removeAll, removeAllElements, removeElement, removeElementAt, retainAll, set, setElementAt, setSize, size, subList, toArray, toArray, trimToSize |
Methods inherited from class java.util.AbstractList |
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iterator, listIterator, listIterator |
Methods inherited from class java.lang.Object |
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getClass, notify, notifyAll, wait, wait, wait |
Methods inherited from interface java.util.List |
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iterator, listIterator, listIterator |
Constructor Detail |
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public BlastSequenceInfo()
Method Detail |
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public void setEndOverlap(int end)
public int getEndOverlap()
public void setOverlapLength(int length)
public int getOverlapLength()
public void setStartOverlap(int start)
public int getStartOverlap()
public boolean overlapStartChecked()
public void setIdentity(int identity)
public int getIdentity()
public boolean identityChecked()
public void setEValue(double expect)
public double getEValue()
public boolean expectChecked()
public boolean allPreliminaryChecked()
public int overlaps(BlastSequenceInfo seq)
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