jprotein.data.datatype
Class PairwiseAlignment

java.lang.Object
  extended by java.util.AbstractCollection
      extended by java.util.AbstractList
          extended by java.util.Vector
              extended by jprotein.data.datatype.PairwiseAlignment
All Implemented Interfaces:
java.io.Serializable, java.lang.Cloneable, java.lang.Iterable, java.util.Collection, java.util.List, java.util.RandomAccess

public class PairwiseAlignment
extends java.util.Vector

See Also:
Serialized Form

Constructor Summary
PairwiseAlignment()
           
 
Method Summary
 Sequence getRefSequence()
           
 void setRefSequence(Sequence ref)
           
 
Methods inherited from class java.util.Vector
add, add, addAll, addAll, addElement, capacity, clear, clone, contains, containsAll, copyInto, elementAt, elements, ensureCapacity, equals, firstElement, get, hashCode, indexOf, indexOf, insertElementAt, isEmpty, lastElement, lastIndexOf, lastIndexOf, remove, remove, removeAll, removeAllElements, removeElement, removeElementAt, retainAll, set, setElementAt, setSize, size, subList, toArray, toArray, toString, trimToSize
 
Methods inherited from class java.util.AbstractList
iterator, listIterator, listIterator
 
Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface java.util.List
iterator, listIterator, listIterator
 

Constructor Detail

PairwiseAlignment

public PairwiseAlignment()
Method Detail

getRefSequence

public Sequence getRefSequence()

setRefSequence

public void setRefSequence(Sequence ref)