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java.lang.Objectjprotein.data.dataformat.parser.Blast
jprotein.data.dataformat.parser.BlastPairwise
public class BlastPairwise
Constructor Summary | |
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BlastPairwise()
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Method Summary | |
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static java.util.Vector |
getAlignmentComposition(java.util.Vector pAli,
Sequence ref)
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static java.util.Vector |
getCompositionFrequencies(java.util.Vector ac)
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static java.util.Vector |
getInformationContent(java.util.Vector acf)
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static java.util.Vector |
getPairwiseInfo(Format bf)
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Methods inherited from class jprotein.data.dataformat.parser.Blast |
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filterSequenceEValues, filterSequenceIdentities, filterSequenceLengths, getSequenceInfo, removeRedundance |
Methods inherited from class java.lang.Object |
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equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public BlastPairwise()
Method Detail |
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public static java.util.Vector getPairwiseInfo(Format bf)
public static java.util.Vector getAlignmentComposition(java.util.Vector pAli, Sequence ref)
public static java.util.Vector getCompositionFrequencies(java.util.Vector ac)
public static java.util.Vector getInformationContent(java.util.Vector acf)
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