jprotein.tree.tools
Class SubstitutionMatrix

java.lang.Object
  extended by jprotein.tree.tools.SubstitutionMatrix
All Implemented Interfaces:
java.io.Serializable

public class SubstitutionMatrix
extends java.lang.Object
implements java.io.Serializable

See Also:
Serialized Form

Constructor Summary
SubstitutionMatrix(java.lang.String matrixFile)
           
 
Method Summary
 double getDistance(Residue res1, Residue res2)
           
 double getExpectedValue()
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

SubstitutionMatrix

public SubstitutionMatrix(java.lang.String matrixFile)
Method Detail

getDistance

public double getDistance(Residue res1,
                          Residue res2)

getExpectedValue

public double getExpectedValue()