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java.lang.Objectjava.util.AbstractCollection
java.util.AbstractList
java.util.Vector
jprotein.data.datatype.Sequence
jprotein.data.datatype.Sequence3D
public class Sequence3D
Field Summary | |
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static int |
DIRECT
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static int |
INDEXED
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Constructor Summary | |
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Sequence3D()
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Sequence3D(java.lang.String sequenceHeader,
java.lang.String chainId)
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Method Summary | |
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void |
addResidue(Residue3D residue)
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void |
addResidue(java.lang.String residueCode)
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java.lang.String |
getChainId()
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java.lang.String |
getHeader()
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Residue3D |
getResidue(int index,
int mode)
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int |
getSequenceBegin()
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int |
getSequenceLength()
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void |
setChainId(java.lang.String chainId)
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void |
setHeader(java.lang.String header)
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void |
setSequenceBegin(int sequenceOffset)
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Methods inherited from class jprotein.data.datatype.Sequence |
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equals, getNonGappedPosition, getNonGappedSequenceLength, getResidue, getSequence, getSequenceName, isIdentical, setSequence, setSequenceName, toFasta, toString |
Methods inherited from class java.util.Vector |
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add, add, addAll, addAll, addElement, capacity, clear, clone, contains, containsAll, copyInto, elementAt, elements, ensureCapacity, firstElement, get, hashCode, indexOf, indexOf, insertElementAt, isEmpty, lastElement, lastIndexOf, lastIndexOf, remove, remove, removeAll, removeAllElements, removeElement, removeElementAt, retainAll, set, setElementAt, setSize, size, subList, toArray, toArray, trimToSize |
Methods inherited from class java.util.AbstractList |
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iterator, listIterator, listIterator |
Methods inherited from class java.lang.Object |
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getClass, notify, notifyAll, wait, wait, wait |
Methods inherited from interface java.util.List |
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iterator, listIterator, listIterator |
Field Detail |
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public static final int DIRECT
public static final int INDEXED
Constructor Detail |
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public Sequence3D()
public Sequence3D(java.lang.String sequenceHeader, java.lang.String chainId)
Method Detail |
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public java.lang.String getChainId()
public void setChainId(java.lang.String chainId)
public void setSequenceBegin(int sequenceOffset)
public int getSequenceBegin()
public void addResidue(java.lang.String residueCode)
public void addResidue(Residue3D residue)
public Residue3D getResidue(int index, int mode)
public int getSequenceLength()
getSequenceLength
in class Sequence
public java.lang.String getHeader()
public void setHeader(java.lang.String header)
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