Uses of Class
jprotein.tree.tools.SubstitutionMatrix

Packages that use SubstitutionMatrix
jprotein.tree.tools   
 

Uses of SubstitutionMatrix in jprotein.tree.tools
 

Methods in jprotein.tree.tools with parameters of type SubstitutionMatrix
 void DistanceMatrix.setSubstitutionMatrix(SubstitutionMatrix sm)
           
 

Constructors in jprotein.tree.tools with parameters of type SubstitutionMatrix
DistanceMatrix(MultiAlignment multiAlignment, SubstitutionMatrix sm)
           
NJ(MultiAlignment multiAlignment, SubstitutionMatrix sm)