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java.lang.Objectjava.util.AbstractCollection
java.util.AbstractList
java.util.Vector
jprotein.data.datatype.MultiAlignment
public class MultiAlignment
Constructor Summary | |
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MultiAlignment()
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MultiAlignment(java.util.Vector sequenceList)
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Method Summary | |
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void |
addAlignment(Sequence ali)
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Sequence |
getAlignment(int index)
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java.util.Vector |
getAlignmentComposition(Sequence ref)
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static java.util.Vector |
getCompositionFrequencies(java.util.Vector ac)
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static java.util.Vector |
getInformationContent(java.util.Vector acf)
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static java.util.Vector |
sumAlignmentComposition(java.util.Vector ac1,
java.util.Vector ac2)
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java.lang.String |
toString()
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Methods inherited from class java.util.Vector |
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add, add, addAll, addAll, addElement, capacity, clear, clone, contains, containsAll, copyInto, elementAt, elements, ensureCapacity, equals, firstElement, get, hashCode, indexOf, indexOf, insertElementAt, isEmpty, lastElement, lastIndexOf, lastIndexOf, remove, remove, removeAll, removeAllElements, removeElement, removeElementAt, retainAll, set, setElementAt, setSize, size, subList, toArray, toArray, trimToSize |
Methods inherited from class java.util.AbstractList |
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iterator, listIterator, listIterator |
Methods inherited from class java.lang.Object |
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getClass, notify, notifyAll, wait, wait, wait |
Methods inherited from interface java.util.List |
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iterator, listIterator, listIterator |
Constructor Detail |
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public MultiAlignment()
public MultiAlignment(java.util.Vector sequenceList)
Method Detail |
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public Sequence getAlignment(int index)
public java.lang.String toString()
toString
in class java.util.Vector
public void addAlignment(Sequence ali)
public java.util.Vector getAlignmentComposition(Sequence ref)
public static java.util.Vector sumAlignmentComposition(java.util.Vector ac1, java.util.Vector ac2)
public static java.util.Vector getCompositionFrequencies(java.util.Vector ac)
public static java.util.Vector getInformationContent(java.util.Vector acf)
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