Uses of Class
jprotein.data.datatype.Sequence3D

Packages that use Sequence3D
jprotein   
jprotein.cluster   
jprotein.cluster.data   
jprotein.data.dataformat.info   
jprotein.rasmol   
jprotein.tools   
 

Uses of Sequence3D in jprotein
 

Methods in jprotein with parameters of type Sequence3D
static java.util.Vector TestAccess.access2PDB(Sequence3D ref, double minAccess, float probeRadius)
           
static java.util.Vector TestAccess.getInterface(Sequence3D seqR, Sequence3D seqL, double minDist)
          interface method
 

Uses of Sequence3D in jprotein.cluster
 

Constructors in jprotein.cluster with parameters of type Sequence3D
Clustering(Sequence3D sequence, float radius)
           
 

Uses of Sequence3D in jprotein.cluster.data
 

Methods in jprotein.cluster.data with parameters of type Sequence3D
 void DistanceMap.initDistanceMap(Sequence3D seq)
           
 

Constructors in jprotein.cluster.data with parameters of type Sequence3D
DistanceMap(Sequence3D seq)
           
 

Uses of Sequence3D in jprotein.data.dataformat.info
 

Methods in jprotein.data.dataformat.info that return Sequence3D
 Sequence3D PdbSequenceInfo.getSequence()
           
 

Constructors in jprotein.data.dataformat.info with parameters of type Sequence3D
PdbSequenceInfo(Sequence3D seq, java.util.Vector propertyData)
           
 

Uses of Sequence3D in jprotein.rasmol
 

Constructors in jprotein.rasmol with parameters of type Sequence3D
SequenceAppearance(Sequence3D sequence)
           
SequenceAppearance(Sequence3D sequence, Property property)
           
 

Uses of Sequence3D in jprotein.tools
 

Methods in jprotein.tools with parameters of type Sequence3D
static java.util.Vector MapContact.map(Sequence3D seq1, Sequence3D seq2, float minCutoff)
           
 java.util.Vector MapClusters.map(Sequence3D ref, java.util.Vector trace, float cutoff)
           
static java.util.Vector MapAccess.mapToBoolean(Sequence3D ref, double minAccess, float probeRadius)
           
static java.util.Vector MapAccess.mapToDouble(Sequence3D ref, double minAccess, float probeRadius)