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C

capture() - Method in class jprotein.rasmol.CapturingCanvas3D
 
capture() - Method in class jprotein.rasmol.ProteinEngine3D
 
CapturingCanvas3D - Class in jprotein.rasmol
 
CapturingCanvas3D(GraphicsConfiguration) - Constructor for class jprotein.rasmol.CapturingCanvas3D
 
Clustal - Class in jprotein.data.dataformat.parser
 
Clustal() - Constructor for class jprotein.data.dataformat.parser.Clustal
 
ClustalFileReader - Class in jprotein.io.file
 
ClustalFileReader(String) - Constructor for class jprotein.io.file.ClustalFileReader
 
ClustalW - Class in jprotein.external
 
ClustalW(String, String) - Constructor for class jprotein.external.ClustalW
 
cluster(Vector) - Method in class jprotein.cluster.Clustering
 
Cluster - Class in jprotein.cluster.data
 
Cluster(float) - Constructor for class jprotein.cluster.data.Cluster
 
Clustering - Class in jprotein.cluster
 
Clustering(Sequence3D, float) - Constructor for class jprotein.cluster.Clustering
 
Command - Class in jprotein.external
 
Command(String) - Constructor for class jprotein.external.Command
 
ConfigFile - Class in jprotein
 
ConfigFile(String) - Constructor for class jprotein.ConfigFile
 
containsAtomCoordinates() - Method in class jprotein.data.datatype.Residue3D
 

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