jprotein.data.dataformat.parser
Class BlastPairwise

java.lang.Object
  jprotein.data.dataformat.parser.Blast
      jprotein.data.dataformat.parser.BlastPairwise

public class BlastPairwise
extends Blast

Constructor Summary

BlastPairwise()

Method Summary

static java.util.Vector	getAlignmentComposition(java.util.Vector pAli, Sequence ref)
static java.util.Vector	getCompositionFrequencies(java.util.Vector ac)
static java.util.Vector	getInformationContent(java.util.Vector acf)
static java.util.Vector	getPairwiseInfo(Format bf)

Methods inherited from class jprotein.data.dataformat.parser.Blast

filterSequenceEValues, filterSequenceIdentities, filterSequenceLengths, getSequenceInfo, removeRedundance

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BlastPairwise

public BlastPairwise()

Method Detail

getPairwiseInfo

public static java.util.Vector getPairwiseInfo(Format bf)

getAlignmentComposition

public static java.util.Vector getAlignmentComposition(java.util.Vector pAli,
                                                       Sequence ref)

getCompositionFrequencies

public static java.util.Vector getCompositionFrequencies(java.util.Vector ac)

getInformationContent

public static java.util.Vector getInformationContent(java.util.Vector acf)