Uses of Class
jprotein.data.datatype.Sequence3D

Packages that use Sequence3D

jprotein
jprotein.cluster
jprotein.cluster.data
jprotein.data.dataformat.info
jprotein.rasmol
jprotein.tools

Uses of Sequence3D in jprotein

Methods in jprotein with parameters of type Sequence3D

static java.util.Vector	TestAccess.access2PDB(Sequence3D ref, double minAccess, float probeRadius)
static java.util.Vector	TestAccess.getInterface(Sequence3D seqR, Sequence3D seqL, double minDist) interface method

Uses of Sequence3D in jprotein.cluster

Constructors in jprotein.cluster with parameters of type Sequence3D

Clustering(Sequence3D sequence, float radius)

Uses of Sequence3D in jprotein.cluster.data

Methods in jprotein.cluster.data with parameters of type Sequence3D

void	DistanceMap.initDistanceMap(Sequence3D seq)

Constructors in jprotein.cluster.data with parameters of type Sequence3D

DistanceMap(Sequence3D seq)

Uses of Sequence3D in jprotein.data.dataformat.info

Methods in jprotein.data.dataformat.info that return Sequence3D

Sequence3D

PdbSequenceInfo.getSequence()

Constructors in jprotein.data.dataformat.info with parameters of type Sequence3D

PdbSequenceInfo(Sequence3D seq, java.util.Vector propertyData)

Uses of Sequence3D in jprotein.rasmol

Constructors in jprotein.rasmol with parameters of type Sequence3D

SequenceAppearance(Sequence3D sequence)

SequenceAppearance(Sequence3D sequence, Property property)

Uses of Sequence3D in jprotein.tools

Methods in jprotein.tools with parameters of type Sequence3D

static java.util.Vector	MapContact.map(Sequence3D seq1, Sequence3D seq2, float minCutoff)
java.util.Vector	MapClusters.map(Sequence3D ref, java.util.Vector trace, float cutoff)
static java.util.Vector	MapAccess.mapToBoolean(Sequence3D ref, double minAccess, float probeRadius)
static java.util.Vector	MapAccess.mapToDouble(Sequence3D ref, double minAccess, float probeRadius)