jprotein.tree.data
Class Node

java.lang.Object
  java.util.AbstractCollection
      java.util.AbstractList
          java.util.Vector
              jprotein.tree.data.Leaf
                  jprotein.tree.data.SimpleNode
                      jprotein.tree.data.Node

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, java.lang.Iterable, java.util.Collection, java.util.List, java.util.RandomAccess

public class Node
extends SimpleNode
implements java.io.Serializable

See Also:

Serialized Form

Constructor Summary

Node(Leaf left, Leaf right, double dIJ)

Node(Leaf left, Leaf right, double dIJ, double lambda)

Method Summary

Methods inherited from class jprotein.tree.data.SimpleNode

equals, getLeftVertice, getRightVertice, goLeft, goRight, initConservedResidue, resetConservedResidue, setLeft, setLeftVertice, setRight, setRightVertice, toString

Methods inherited from class jprotein.tree.data.Leaf

addDistance, getBackTrace, getConservedResidue, getDistance, getDoubleDistance, getSequence, getSum, removeDistance, setBackTrace, setConservedResidue, unload

Methods inherited from class java.util.Vector

add, add, addAll, addAll, addElement, capacity, clear, clone, contains, containsAll, copyInto, elementAt, elements, ensureCapacity, firstElement, get, hashCode, indexOf, indexOf, insertElementAt, isEmpty, lastElement, lastIndexOf, lastIndexOf, remove, remove, removeAll, removeAllElements, removeElement, removeElementAt, retainAll, set, setElementAt, setSize, size, subList, toArray, toArray, trimToSize

Methods inherited from class java.util.AbstractList

iterator, listIterator, listIterator

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.List

iterator, listIterator, listIterator

Constructor Detail

Node

public Node(Leaf left,
            Leaf right,
            double dIJ)

Node

public Node(Leaf left,
            Leaf right,
            double dIJ,
            double lambda)