jprotein.tree.data
Class SimpleNode

java.lang.Object
  java.util.AbstractCollection
      java.util.AbstractList
          java.util.Vector
              jprotein.tree.data.Leaf
                  jprotein.tree.data.SimpleNode

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, java.lang.Iterable, java.util.Collection, java.util.List, java.util.RandomAccess

Direct Known Subclasses:

Node

public class SimpleNode
extends Leaf
implements java.io.Serializable

See Also:

Serialized Form

Constructor Summary

SimpleNode(Leaf left, Leaf right)

Method Summary

boolean	equals(java.lang.Object o)
double	getLeftVertice()
double	getRightVertice()
Leaf	goLeft()
Leaf	goRight()
void	initConservedResidue()
void	resetConservedResidue()
void	setLeft(Leaf left)
void	setLeftVertice(double distance)
void	setRight(Leaf right)
void	setRightVertice(double distance)
java.lang.String	toString()

Methods inherited from class jprotein.tree.data.Leaf

addDistance, getBackTrace, getConservedResidue, getDistance, getDoubleDistance, getSequence, getSum, removeDistance, setBackTrace, setConservedResidue, unload

Methods inherited from class java.util.Vector

add, add, addAll, addAll, addElement, capacity, clear, clone, contains, containsAll, copyInto, elementAt, elements, ensureCapacity, firstElement, get, hashCode, indexOf, indexOf, insertElementAt, isEmpty, lastElement, lastIndexOf, lastIndexOf, remove, remove, removeAll, removeAllElements, removeElement, removeElementAt, retainAll, set, setElementAt, setSize, size, subList, toArray, toArray, trimToSize

Methods inherited from class java.util.AbstractList

iterator, listIterator, listIterator

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.List

iterator, listIterator, listIterator

Constructor Detail

SimpleNode

public SimpleNode(Leaf left,
                  Leaf right)

Method Detail

toString

public java.lang.String toString()

Overrides:

toString in class Leaf

equals

public boolean equals(java.lang.Object o)

Specified by:

equals in interface java.util.Collection

Specified by:

equals in interface java.util.List

Overrides:

equals in class Leaf

setLeft

public void setLeft(Leaf left)

setRight

public void setRight(Leaf right)

goLeft

public Leaf goLeft()

goRight

public Leaf goRight()

setLeftVertice

public void setLeftVertice(double distance)

setRightVertice

public void setRightVertice(double distance)

getLeftVertice

public double getLeftVertice()

getRightVertice

public double getRightVertice()

initConservedResidue

public void initConservedResidue()

Overrides:

initConservedResidue in class Leaf

resetConservedResidue

public void resetConservedResidue()

Overrides:

resetConservedResidue in class Leaf