Uses of Class
jprotein.tree.data.Leaf

Packages that use Leaf

jprotein.tree
jprotein.tree.data
jprotein.tree.tools

Uses of Leaf in jprotein.tree

Methods in jprotein.tree with parameters of type Leaf

VisualLeaf	VisualTree.initTree(Leaf root)
void	VisualTree.setRoot(Leaf root)

Constructors in jprotein.tree with parameters of type Leaf

VisualTree(Leaf root)

Uses of Leaf in jprotein.tree.data

Subclasses of Leaf in jprotein.tree.data

class	Node
class	SimpleNode

Methods in jprotein.tree.data that return Leaf

Leaf	VisualLeaf.getLeaf()
Leaf	SimpleNode.goLeft()
Leaf	SimpleNode.goRight()

Methods in jprotein.tree.data with parameters of type Leaf

void	SimpleNode.setLeft(Leaf left)
void	SimpleNode.setRight(Leaf right)

Constructors in jprotein.tree.data with parameters of type Leaf

Node(Leaf left, Leaf right, double dIJ)

Node(Leaf left, Leaf right, double dIJ, double lambda)

SimpleNode(Leaf left, Leaf right)

VisualLeaf(Leaf leaf)

Uses of Leaf in jprotein.tree.tools

Methods in jprotein.tree.tools that return Leaf

Leaf	DistanceMatrix.getLeaf(int index)
Leaf	Tree.getLeaf(SimpleNode node, int direction)
Leaf	Tree.getLeaf(SimpleNode root, Sequence alignment)

Methods in jprotein.tree.tools with parameters of type Leaf

PathIndex	Tree.getPathIndex(SimpleNode root, Leaf leaf)
void	Tree.rootMidTree(SimpleNode root, Leaf leaf1, Leaf leaf2)
void	Tree.setLeaf(SimpleNode node, int direction, Leaf leaf)