jprotein.tree.tools
Class ET

java.lang.Object
  jprotein.tree.tools.ET

public class ET
extends java.lang.Object

Constructor Summary

ET(java.lang.String matrixFile)

Method Summary

java.util.Vector	generateTraceRecord(MultiAlignment ma, Sequence ref)
double[]	getRelativeTraceDepth(java.util.Vector traceLevels, double coverage)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ET

public ET(java.lang.String matrixFile)

Method Detail

generateTraceRecord

public java.util.Vector generateTraceRecord(MultiAlignment ma,
                                            Sequence ref)
                                     throws java.lang.Exception

Throws:

java.lang.Exception

getRelativeTraceDepth

public double[] getRelativeTraceDepth(java.util.Vector traceLevels,
                                      double coverage)