jprotein.tree.tools
Class NJ

java.lang.Object
  jprotein.tree.tools.NJ

public class NJ
extends java.lang.Object

Constructor Summary

NJ(MultiAlignment multiAlignment, SubstitutionMatrix sm)

Method Summary

DistanceMatrix	getDistanceMatrix()
Node	getTree()
void	rootTree()
java.lang.String	toString()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

NJ

public NJ(MultiAlignment multiAlignment,
          SubstitutionMatrix sm)
   throws java.lang.Exception

Throws:

java.lang.Exception

Method Detail

getDistanceMatrix

public DistanceMatrix getDistanceMatrix()

getTree

public Node getTree()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

rootTree

public void rootTree()