jprotein.tree.tools
Class SubstitutionMatrix

java.lang.Object
  jprotein.tree.tools.SubstitutionMatrix

All Implemented Interfaces:

java.io.Serializable

public class SubstitutionMatrix
extends java.lang.Object
implements java.io.Serializable

See Also:

Serialized Form

Constructor Summary

SubstitutionMatrix(java.lang.String matrixFile)

Method Summary

double	getDistance(Residue res1, Residue res2)
double	getExpectedValue()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SubstitutionMatrix

public SubstitutionMatrix(java.lang.String matrixFile)

Method Detail

getDistance

public double getDistance(Residue res1,
                          Residue res2)

getExpectedValue

public double getExpectedValue()