Uses of Class
jprotein.tree.tools.SubstitutionMatrix

Packages that use SubstitutionMatrix

jprotein.tree.tools

Uses of SubstitutionMatrix in jprotein.tree.tools

Methods in jprotein.tree.tools with parameters of type SubstitutionMatrix

void	DistanceMatrix.setSubstitutionMatrix(SubstitutionMatrix sm)

Constructors in jprotein.tree.tools with parameters of type SubstitutionMatrix

DistanceMatrix(MultiAlignment multiAlignment, SubstitutionMatrix sm)

NJ(MultiAlignment multiAlignment, SubstitutionMatrix sm)