Supplementary material for

Codon Adaptation Index as a measure of

dominating codon bias

A.Carbone, A.Zinovyev, F.Kps

to appear in Bioinformatics, 2003

Supplementary material for the article. The file contains:

  1. Accession Numbers
  2. Functional Categories: H.pylori, B.subtilis, E.coli, S.cerevisiae
  3. Localisation Categories: S.cerevisiae
  4. Tables of weights computed from reference set: H.pylori, H.influenzae, S.enterica, S.aureus, L.lactis, B.subtilis, E.coli, S.cerevisiae, C.elegans, D.melanogaster.
  5. Reference sets: H.pylori, H.influenzae, S.enterica, S.aureus, L.lactis, B.subtilis, E.coli, S.cerevisiae, C.elegans, D.melanogaster

 

Other tables and graphs:
M.pulmonis L.lactis
M.tuberculosis B.subtilis
T.pallidum E.coli
H.pylori S.cerevisiae
H.influenzae C.elegans
S.enterica D.melanogaster
S.aureus  
 
Transcriptional data (concerning a set of 4849 genes) for Saccharomyces cerevisiae taken from the study reported in

F.C.P.Holstege, E.G.Jennings, J.J.Wyrick, T.I.Lee, C.J.Hengartner, M.R.Green, T.R.Golub, E.S.Lander, R.A.Young. "Dissecting the regulatory circuitry of a eukaryotic genome", Cell, 95:717--728, November 25, 1998.

Data downloaded from http://www.wi.mit.edu/young/expression.html in 1999.