|
|
ID |
Name |
Source |
pValue |
FDR B&H |
FDR B&Y |
Bonferroni |
Genes from Input
|
Genes in Annotation
|
|
1
|
22681889
|
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.
|
Pubmed
|
4.387E-12
|
1.322E-8
|
1.136E-7
|
1.322E-8
|
14
|
803
|
|
2
|
22268729
|
Proteomic identification of common SCF ubiquitin ligase FBXO6-interacting glycoproteins in three kinds of cells.
|
Pubmed
|
4.582E-11
|
6.905E-8
|
5.931E-7
|
1.381E-7
|
12
|
613
|
|
3
|
22623428
|
Proteomic analysis of ¿4ß1 integrin adhesion complexes reveals ¿-subunit-dependent protein recruitment.
|
Pubmed
|
1.467E-9
|
1.474E-6
|
1.266E-5
|
4.423E-6
|
10
|
491
|
|
4
|
15461802
|
A genome annotation-driven approach to cloning the human ORFeome.
|
Pubmed
|
7.620E-9
|
5.742E-6
|
4.931E-5
|
2.297E-5
|
8
|
294
|
|
5
|
19738201
|
Proteomic analysis of integrin-associated complexes identifies RCC2 as a dual regulator of Rac1 and Arf6.
|
Pubmed
|
4.645E-8
|
2.800E-5
|
2.405E-4
|
1.400E-4
|
10
|
708
|
|
6
|
18457437
|
Identification of intracellular proteins associated with the EBV-encoded nuclear antigen 5 using an efficient TAP procedure and FT-ICR mass spectrometry.
|
Pubmed
|
7.059E-8
|
3.546E-5
|
3.045E-4
|
2.128E-4
|
6
|
152
|
|
7
|
23398456
|
The P-body component USP52/PAN2 is a novel regulator of HIF1A mRNA stability.
|
Pubmed
|
3.589E-7
|
1.496E-4
|
1.285E-3
|
1.082E-3
|
7
|
328
|
|
8
|
12226669
|
Comprehensive proteomic analysis of the human spliceosome.
|
Pubmed
|
4.376E-7
|
1.496E-4
|
1.285E-3
|
1.319E-3
|
5
|
109
|
|
9
|
15231747
|
A protein interaction framework for human mRNA degradation.
|
Pubmed
|
5.234E-7
|
1.496E-4
|
1.285E-3
|
1.577E-3
|
7
|
347
|
|
10
|
20877624
|
Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression.
|
Pubmed
|
5.461E-7
|
1.496E-4
|
1.285E-3
|
1.646E-3
|
10
|
926
|
|
11
|
20877624:gr
|
Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression.
|
GeneRIF
|
5.461E-7
|
1.496E-4
|
1.285E-3
|
1.646E-3
|
10
|
926
|
|
12
|
24778252
|
TRIM65 regulates microRNA activity by ubiquitination of TNRC6.
|
Pubmed
|
7.202E-7
|
1.809E-4
|
1.554E-3
|
2.171E-3
|
7
|
364
|
|
13
|
11875025
|
The human ribosomal protein genes: sequencing and comparative analysis of 73 genes.
|
Pubmed
|
8.333E-7
|
1.911E-4
|
1.641E-3
|
2.512E-3
|
4
|
52
|
|
14
|
15779907
|
Toward the full set of human mitochondrial aminoacyl-tRNA synthetases: characterization of AspRS and TyrRS.
|
Pubmed
|
8.875E-7
|
1.911E-4
|
1.641E-3
|
2.675E-3
|
3
|
14
|
|
15
|
23246001
|
SGTA recognizes a noncanonical ubiquitin-like domain in the Bag6-Ubl4A-Trc35 complex to promote endoplasmic reticulum-associated degradation.
|
Pubmed
|
1.008E-6
|
2.025E-4
|
1.739E-3
|
3.037E-3
|
6
|
239
|
|
16
|
21319273
|
An important role for CDK2 in G1 to S checkpoint activation and DNA damage response in human embryonic stem cells.
|
Pubmed
|
1.282E-6
|
2.415E-4
|
2.074E-3
|
3.864E-3
|
7
|
397
|
|
17
|
21630459
|
Proteomic characterization of the human sperm nucleus.
|
Pubmed
|
2.416E-6
|
4.283E-4
|
3.679E-3
|
7.282E-3
|
7
|
437
|
|
18
|
8722009
|
Structure and evolution of mammalian ribosomal proteins.
|
Pubmed
|
4.729E-6
|
7.919E-4
|
6.801E-3
|
1.425E-2
|
4
|
80
|
|
19
|
17620599
|
Functional specialization of beta-arrestin interactions revealed by proteomic analysis.
|
Pubmed
|
5.126E-6
|
8.131E-4
|
6.983E-3
|
1.545E-2
|
6
|
317
|
|
20
|
15189156
|
The molecular mechanics of eukaryotic translation.
|
Pubmed
|
6.608E-6
|
9.958E-4
|
8.553E-3
|
1.992E-2
|
4
|
87
|
|
21
|
23455924
|
A Y2H-seq approach defines the human protein methyltransferase interactome.
|
Pubmed
|
7.896E-6
|
1.133E-3
|
9.733E-3
|
2.380E-2
|
6
|
342
|
|
22
|
24639526
|
RSPO-LGR4 functions via IQGAP1 to potentiate Wnt signaling.
|
Pubmed
|
9.269E-6
|
1.215E-3
|
1.043E-2
|
2.794E-2
|
5
|
203
|
|
23
|
25192599
|
Interaction of amyotrophic lateral sclerosis/frontotemporal lobar degeneration-associated fused-in-sarcoma with proteins involved in metabolic and protein degradation pathways.
|
Pubmed
|
9.269E-6
|
1.215E-3
|
1.043E-2
|
2.794E-2
|
5
|
203
|
|
24
|
23463506
|
The intracellular interactome of tetraspanin-enriched microdomains reveals their function as sorting machineries toward exosomes.
|
Pubmed
|
1.143E-5
|
1.435E-3
|
1.233E-2
|
3.445E-2
|
5
|
212
|
|
25
|
20458337
|
MHC class II-associated proteins in B-cell exosomes and potential functional implications for exosome biogenesis.
|
Pubmed
|
1.256E-5
|
1.514E-3
|
1.300E-2
|
3.784E-2
|
7
|
563
|
|
26
|
20020773
|
Global analysis of TDP-43 interacting proteins reveals strong association with RNA splicing and translation machinery.
|
Pubmed
|
1.458E-5
|
1.676E-3
|
1.439E-2
|
4.395E-2
|
5
|
223
|
|
27
|
25900982
|
BioID-based Identification of Skp Cullin F-box (SCF)ß-TrCP1/2 E3 Ligase Substrates.
|
Pubmed
|
1.555E-5
|
1.676E-3
|
1.439E-2
|
4.687E-2
|
5
|
226
|
|
28
|
7821789
|
Construction of a human full-length cDNA bank.
|
Pubmed
|
1.557E-5
|
1.676E-3
|
1.439E-2
|
4.692E-2
|
4
|
108
|
|
29
|
12138183
|
Steady-state nuclear localization of exportin-t involves RanGTP binding and two distinct nuclear pore complex interaction domains.
|
Pubmed
|
1.846E-5
|
1.919E-3
|
1.648E-2
|
5.564E-2
|
2
|
5
|
|
30
|
25147182
|
Quantitative Lys-¿-Gly-Gly (diGly) proteomics coupled with inducible RNAi reveals ubiquitin-mediated proteolysis of DNA damage-inducible transcript 4 (DDIT4) by the E3 ligase HUWE1.
|
Pubmed
|
1.938E-5
|
1.919E-3
|
1.649E-2
|
5.842E-2
|
6
|
401
|
|
31
|
17332742
|
Composition and three-dimensional EM structure of double affinity-purified, human prespliceosomal A complexes.
|
Pubmed
|
1.994E-5
|
1.919E-3
|
1.649E-2
|
6.010E-2
|
4
|
115
|
|
32
|
25963833
|
Quantitative Proteomics Reveals Dynamic Interactions of the Minichromosome Maintenance Complex (MCM) in the Cellular Response to Etoposide Induced DNA Damage.
|
Pubmed
|
2.080E-5
|
1.919E-3
|
1.649E-2
|
6.270E-2
|
8
|
845
|
|
33
|
23125841
|
Characterization of staufen1 ribonucleoproteins by mass spectrometry and biochemical analyses reveal the presence of diverse host proteins associated with human immunodeficiency virus type 1.
|
Pubmed
|
2.116E-5
|
1.919E-3
|
1.649E-2
|
6.378E-2
|
5
|
241
|
|
34
|
27499296
|
Mitochondrial Protein Interaction Mapping Identifies Regulators of Respiratory Chain Function.
|
Pubmed
|
2.165E-5
|
1.919E-3
|
1.649E-2
|
6.526E-2
|
6
|
409
|
|
35
|
15635413
|
Nucleolar proteome dynamics.
|
Pubmed
|
2.478E-5
|
2.134E-3
|
1.833E-2
|
7.470E-2
|
6
|
419
|
|
36
|
17681147
|
Ufd1 is a cofactor of gp78 and plays a key role in cholesterol metabolism by regulating the stability of HMG-CoA reductase.
|
Pubmed
|
2.767E-5
|
2.296E-3
|
1.972E-2
|
8.339E-2
|
2
|
6
|
|
37
|
23443559
|
LGALS3BP regulates centriole biogenesis and centrosome hypertrophy in cancer cells.
|
Pubmed
|
2.819E-5
|
2.296E-3
|
1.972E-2
|
8.496E-2
|
7
|
639
|
|
38
|
22586326
|
Functional proteomics establishes the interaction of SIRT7 with chromatin remodeling complexes and expands its role in regulation of RNA polymerase I transcription.
|
Pubmed
|
3.234E-5
|
2.565E-3
|
2.203E-2
|
9.746E-2
|
7
|
653
|
|
39
|
12962325
|
Characterization and analysis of posttranslational modifications of the human large cytoplasmic ribosomal subunit proteins by mass spectrometry and Edman sequencing.
|
Pubmed
|
4.079E-5
|
3.073E-3
|
2.639E-2
|
1.229E-1
|
3
|
48
|
|
40
|
14567916
|
Regulated release of L13a from the 60S ribosomal subunit as a mechanism of transcript-specific translational control.
|
Pubmed
|
4.079E-5
|
3.073E-3
|
2.639E-2
|
1.229E-1
|
3
|
48
|
|
41
|
7772601
|
Cloning, sequencing and expression of the L5, L21, L27a, L28, S5, S9, S10 and S29 human ribosomal protein mRNAs.
|
Pubmed
|
5.155E-5
|
3.790E-3
|
3.255E-2
|
1.554E-1
|
2
|
8
|
|
42
|
22678362
|
MMS19 assembles iron-sulfur proteins required for DNA metabolism and genomic integrity.
|
Pubmed
|
5.636E-5
|
3.829E-3
|
3.288E-2
|
1.699E-1
|
4
|
150
|
|
43
|
16009940
|
Human ISG15 conjugation targets both IFN-induced and constitutively expressed proteins functioning in diverse cellular pathways.
|
Pubmed
|
5.934E-5
|
3.829E-3
|
3.288E-2
|
1.788E-1
|
4
|
152
|
|
44
|
11751223
|
Differential expression of genes coding for ribosomal proteins in different human tissues.
|
Pubmed
|
6.622E-5
|
3.829E-3
|
3.288E-2
|
1.996E-1
|
2
|
9
|
|
45
|
22751105
|
Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress.
|
Pubmed
|
7.066E-5
|
3.829E-3
|
3.288E-2
|
2.130E-1
|
4
|
159
|
|
46
|
24797263
|
Proteomic analysis of the epidermal growth factor receptor (EGFR) interactome and post-translational modifications associated with receptor endocytosis in response to EGF and stress.
|
Pubmed
|
8.481E-5
|
3.829E-3
|
3.288E-2
|
2.556E-1
|
5
|
323
|
|
47
|
24332808
|
PRP19 transforms into a sensor of RPA-ssDNA after DNA damage and drives ATR activation via a ubiquitin-mediated circuitry.
|
Pubmed
|
1.078E-4
|
3.829E-3
|
3.288E-2
|
3.250E-1
|
5
|
340
|
|
48
|
9582194
|
A map of 75 human ribosomal protein genes.
|
Pubmed
|
1.109E-4
|
3.829E-3
|
3.288E-2
|
3.342E-1
|
3
|
67
|
|
49
|
22365833
|
Dynamic protein-protein interaction wiring of the human spliceosome.
|
Pubmed
|
1.613E-4
|
3.829E-3
|
3.288E-2
|
4.862E-1
|
4
|
197
|
|
50
|
25609649
|
Proteomic analyses reveal distinct chromatin-associated and soluble transcription factor complexes.
|
Pubmed
|
1.656E-4
|
3.829E-3
|
3.288E-2
|
4.990E-1
|
7
|
849
|